Wall clock time and date at job start Mon Mar 30 2020 04:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37908 * 119.50096 * 2 1 4 4 C 1.40092 * 119.16427 * 180.02562 * 3 2 1 5 5 C 1.43204 * 120.89077 * 180.02562 * 4 3 2 6 6 N 4.80786 * 135.19644 * 0.02562 * 2 1 3 7 7 C 1.39651 * 118.22239 * 359.97438 * 4 3 2 8 8 C 1.38987 * 118.92379 * 0.02562 * 7 4 3 9 9 N 1.39034 * 119.64065 * 179.97438 * 8 7 4 10 10 C 1.46897 * 110.99956 * 179.97438 * 9 8 7 11 11 C 1.53247 * 109.33862 * 187.25170 * 10 9 8 12 12 N 1.47074 * 108.51990 * 306.16776 * 11 10 9 13 13 C 1.36942 * 120.88247 * 231.18498 * 12 11 10 14 14 H 1.08002 * 119.99420 * 27.10940 * 13 12 11 15 15 C 1.38813 * 120.00143 * 207.11011 * 13 12 11 16 16 N 1.31617 * 119.99715 * 16.76771 * 15 13 12 17 17 Si 1.86795 * 119.99947 * 196.77399 * 15 13 12 18 18 H 1.48494 * 109.47132 * 179.97438 * 17 15 13 19 19 H 1.48507 * 109.47079 * 299.99798 * 17 15 13 20 20 H 1.48501 * 109.47054 * 59.99515 * 17 15 13 21 21 C 1.47078 * 118.23813 * 51.45896 * 12 11 10 22 22 C 1.46903 * 110.99967 * 304.30011 * 9 8 7 23 23 N 1.31940 * 119.49575 * 180.27845 * 2 1 3 24 24 H 1.08994 * 109.47617 * 89.99549 * 1 2 3 25 25 H 1.09000 * 109.47048 * 210.00374 * 1 2 3 26 26 H 1.09007 * 109.46992 * 329.99658 * 1 2 3 27 27 H 1.08005 * 120.41918 * 359.97438 * 3 2 1 28 28 H 1.08001 * 120.54370 * 179.97438 * 7 4 3 29 29 H 1.09004 * 109.49264 * 67.29290 * 10 9 8 30 30 H 1.08999 * 109.49345 * 307.21005 * 10 9 8 31 31 H 1.09000 * 109.62236 * 186.45985 * 11 10 9 32 32 H 1.08996 * 109.62383 * 65.88170 * 11 10 9 33 33 H 0.97002 * 119.99529 * 179.97438 * 16 15 13 34 34 H 1.09003 * 109.62879 * 68.24716 * 21 12 11 35 35 H 1.09001 * 109.63018 * 188.82828 * 21 12 11 36 36 H 1.09007 * 109.49038 * 292.70796 * 22 9 8 37 37 H 1.08997 * 109.49035 * 52.78697 * 22 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1861 1.2003 0.0000 4 6 3.5870 1.1920 -0.0005 5 6 4.3294 2.4166 0.0000 6 7 4.9183 3.3880 0.0015 7 6 4.2401 -0.0423 -0.0005 8 6 3.4793 -1.2054 -0.0005 9 7 4.1141 -2.4424 -0.0010 10 6 3.1344 -3.5369 -0.0003 11 6 3.8649 -4.8717 0.1816 12 7 4.9120 -4.9751 -0.8459 13 6 5.0113 -6.0871 -1.6390 14 1 4.1343 -6.6821 -1.8467 15 6 6.2391 -6.4495 -2.1757 16 7 7.3490 -5.9463 -1.6784 17 14 6.3161 -7.6512 -3.6037 18 1 7.7331 -7.8712 -3.9896 19 1 5.7070 -8.9431 -3.1969 20 1 5.5693 -7.0942 -4.7601 21 6 5.8535 -3.8550 -0.9952 22 6 5.0417 -2.5576 -1.1344 23 7 2.1566 -1.1484 -0.0056 24 1 -0.3634 0.0001 -1.0276 25 1 -0.3633 -0.8900 0.5139 26 1 -0.3633 0.8900 0.5139 27 1 1.6447 2.1349 -0.0004 28 1 5.3190 -0.0924 -0.0014 29 1 2.5955 -3.5434 -0.9478 30 1 2.4295 -3.3935 0.8186 31 1 3.1584 -5.6940 0.0685 32 1 4.3187 -4.9087 1.1720 33 1 8.2070 -6.1998 -2.0532 34 1 6.4949 -3.7962 -0.1157 35 1 6.4626 -4.0049 -1.8866 36 1 4.4765 -2.5775 -2.0663 37 1 5.7196 -1.7040 -1.1377 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000160928407.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:48 Heat of formation + Delta-G solvation = 89.580811 kcal Electronic energy + Delta-G solvation = -20292.268586 eV Core-core repulsion = 17263.169130 eV Total energy + Delta-G solvation = -3029.099456 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.83841 -39.48262 -37.87421 -36.36581 -34.17402 -33.60735 -32.21199 -31.53721 -28.90375 -27.85324 -25.73995 -25.03777 -24.09816 -22.72728 -21.07730 -19.60156 -18.64054 -17.86372 -17.10575 -16.92125 -16.59867 -16.12826 -15.45803 -15.38488 -15.25596 -15.03353 -14.70664 -14.60010 -14.35731 -14.21021 -14.00295 -13.25104 -13.19839 -13.04751 -12.96779 -12.79578 -12.59737 -12.42854 -12.15465 -12.02916 -11.69808 -11.58482 -10.98191 -10.64820 -10.61360 -10.49150 -9.06644 -8.71265 -7.88291 -5.32876 -0.39921 0.07661 1.41596 1.49341 1.51227 1.58075 1.85540 2.40375 2.52338 2.63180 2.87415 3.28336 3.37455 3.64035 3.89314 3.95754 4.06186 4.26732 4.30372 4.40030 4.52388 4.52787 4.60225 4.67289 4.80758 4.91430 4.94533 4.99193 5.03256 5.16454 5.18950 5.33411 5.51303 5.62054 5.63631 5.81251 6.20321 6.24329 6.36745 6.99760 7.12899 7.81905 8.36094 9.19027 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.025866 B = 0.004418 C = 0.003995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1082.254371 B = 6335.897453 C = 7007.516377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.155 3.845 3 C -0.147 4.147 4 C 0.044 3.956 5 C 0.282 3.718 6 N -0.437 5.437 7 C -0.156 4.156 8 C 0.314 3.686 9 N -0.480 5.480 10 C 0.076 3.924 11 C 0.141 3.859 12 N -0.614 5.614 13 C -0.267 4.267 14 H 0.069 0.931 15 C -0.046 4.046 16 N -0.934 5.934 17 Si 0.967 3.033 18 H -0.294 1.294 19 H -0.276 1.276 20 H -0.278 1.278 21 C 0.184 3.816 22 C 0.056 3.944 23 N -0.523 5.523 24 H 0.091 0.909 25 H 0.074 0.926 26 H 0.106 0.894 27 H 0.177 0.823 28 H 0.148 0.852 29 H 0.037 0.963 30 H 0.093 0.907 31 H 0.067 0.933 32 H 0.018 0.982 33 H 0.251 0.749 34 H 0.008 0.992 35 H 0.067 0.933 36 H 0.035 0.965 37 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.473 13.541 2.830 19.310 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.016 3.984 3 C -0.171 4.171 4 C 0.032 3.968 5 C -0.034 4.034 6 N -0.112 5.112 7 C -0.181 4.181 8 C 0.082 3.918 9 N -0.196 5.196 10 C -0.052 4.052 11 C 0.015 3.985 12 N -0.338 5.338 13 C -0.396 4.396 14 H 0.087 0.913 15 C -0.242 4.242 16 N -0.580 5.580 17 Si 0.795 3.205 18 H -0.220 1.220 19 H -0.202 1.202 20 H -0.205 1.205 21 C 0.058 3.942 22 C -0.071 4.071 23 N -0.239 5.239 24 H 0.110 0.890 25 H 0.093 0.907 26 H 0.125 0.875 27 H 0.194 0.806 28 H 0.166 0.834 29 H 0.056 0.944 30 H 0.111 0.889 31 H 0.086 0.914 32 H 0.036 0.964 33 H 0.060 0.940 34 H 0.026 0.974 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -12.549 14.084 3.196 19.133 hybrid contribution 0.663 -0.559 -1.125 1.420 sum -11.886 13.526 2.071 18.125 Atomic orbital electron populations 1.20866 0.85673 1.04934 1.04399 1.21616 0.98518 0.86513 0.91767 1.22125 0.91387 1.01139 1.02406 1.15938 0.92734 0.86029 1.02054 1.25406 0.92627 0.92319 0.93036 1.81288 1.09043 1.11927 1.08968 1.21587 1.01878 0.90051 1.04618 1.19851 0.88282 0.90416 0.93218 1.59022 1.18585 1.00623 1.41386 1.22277 0.92377 0.89283 1.01308 1.21212 0.90897 0.95264 0.91082 1.44421 1.34216 1.16561 1.38594 1.19502 0.93095 1.04126 1.22919 0.91333 1.25760 0.94978 1.00824 1.02641 1.70154 0.97076 1.48511 1.42287 0.85345 0.76192 0.79131 0.79789 1.22016 1.20152 1.20456 1.20769 0.90318 0.83688 0.99453 1.22932 0.94536 1.00698 0.88973 1.67452 1.08674 1.31596 1.16180 0.89038 0.90661 0.87547 0.80592 0.83398 0.94441 0.88918 0.91448 0.96365 0.93965 0.97439 0.91525 0.94698 0.88688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.13 10.16 71.23 0.72 -0.41 16 2 C 0.15 2.87 6.77 42.46 0.29 3.16 16 3 C -0.15 -2.30 9.47 22.64 0.21 -2.08 16 4 C 0.04 0.87 5.75 -21.24 -0.12 0.75 16 5 C 0.28 6.07 15.40 88.33 1.36 7.43 16 6 N -0.44 -11.19 18.54 19.00 0.35 -10.83 16 7 C -0.16 -3.77 8.91 22.79 0.20 -3.57 16 8 C 0.31 9.00 6.41 133.02 0.85 9.85 16 9 N -0.48 -16.42 4.65 -700.16 -3.26 -19.67 16 10 C 0.08 2.65 4.82 86.39 0.42 3.07 16 11 C 0.14 5.86 6.69 86.35 0.58 6.44 16 12 N -0.61 -30.63 3.03 -697.26 -2.11 -32.74 16 13 C -0.27 -14.47 9.63 84.03 0.81 -13.66 16 14 H 0.07 3.61 7.88 -2.91 -0.02 3.59 16 15 C -0.05 -2.55 4.94 84.86 0.42 -2.13 16 16 N -0.93 -54.23 11.15 21.65 0.24 -53.99 16 17 Si 0.97 44.08 29.59 68.60 2.03 46.11 16 18 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 21 C 0.18 8.69 5.44 86.50 0.47 9.16 16 22 C 0.06 2.04 5.43 86.53 0.47 2.51 16 23 N -0.52 -13.68 8.55 -181.54 -1.55 -15.23 16 24 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 25 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.11 0.57 8.07 -2.38 -0.02 0.55 16 27 H 0.18 1.48 8.06 -2.91 -0.02 1.45 16 28 H 0.15 3.45 7.14 -2.91 -0.02 3.42 16 29 H 0.04 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.09 2.93 7.65 -2.39 -0.02 2.91 16 31 H 0.07 2.67 7.95 -2.39 -0.02 2.65 16 32 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.25 14.16 8.31 -92.71 -0.77 13.39 16 34 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 35 H 0.07 3.52 6.13 -2.39 -0.01 3.50 16 36 H 0.03 1.33 8.14 -2.38 -0.02 1.31 16 37 H 0.09 2.97 6.62 -2.39 -0.02 2.96 16 Total: -1.00 -65.15 313.32 3.47 -61.69 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.08 Total: 4.16 kcal Atomic # 6 Polarization: 13.83 SS G_CDS: 6.68 Total: 20.52 kcal Atomic # 7 Polarization: -126.15 SS G_CDS: -6.33 Total: -132.47 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -65.15 3.47 -61.69 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000160928407.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.270 kcal (2) G-P(sol) polarization free energy of solvation -65.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds