Wall clock time and date at job start Mon Mar 30 2020 05:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 S 1.81401 * 109.46777 * 180.02562 * 15 13 12 17 17 C 1.81404 * 102.99827 * 179.97438 * 16 15 13 18 18 C 1.53117 * 109.51996 * 294.68193 * 17 16 15 19 19 C 1.53042 * 109.27647 * 182.43868 * 18 17 16 20 20 N 1.46846 * 109.52413 * 59.17973 * 19 18 17 21 21 C 1.46853 * 111.19916 * 298.25947 * 20 19 18 22 22 C 1.53043 * 109.51996 * 61.73561 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 29 29 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 30 30 H 1.08996 * 109.52064 * 54.86817 * 17 16 15 31 31 H 1.08995 * 109.50578 * 302.37893 * 18 17 16 32 32 H 1.08999 * 109.50830 * 62.50124 * 18 17 16 33 33 H 1.09001 * 109.46346 * 299.16426 * 19 18 17 34 34 H 1.09001 * 109.46152 * 179.19527 * 19 18 17 35 35 H 1.00903 * 110.99911 * 62.35178 * 20 19 18 36 36 H 1.09004 * 109.45859 * 301.72915 * 21 20 19 37 37 H 1.08998 * 109.45562 * 181.74868 * 21 20 19 38 38 H 1.09003 * 109.49726 * 180.88026 * 22 21 20 39 39 H 1.09004 * 109.50206 * 60.77083 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 16 2.7100 0.4372 4.9763 17 6 3.3276 -0.5859 6.3411 18 6 2.2971 -1.6674 6.6768 19 6 2.7962 -2.4886 7.8679 20 7 2.9986 -1.6047 9.0230 21 6 4.0186 -0.5867 8.7404 22 6 3.5559 0.2911 7.5752 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 1.9776 -1.5506 3.8326 29 1 3.6492 -1.1202 3.3980 30 1 4.2671 -1.0548 6.0486 31 1 1.3467 -1.1983 6.9309 32 1 2.1619 -2.3213 5.8152 33 1 3.7398 -2.9686 7.6082 34 1 2.0581 -3.2505 8.1185 35 1 2.1301 -1.1771 9.3076 36 1 4.9564 -1.0757 8.4766 37 1 4.1681 0.0327 9.6247 38 1 4.3201 1.0367 7.3556 39 1 2.6253 0.7912 7.8436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168103949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:33 Heat of formation + Delta-G solvation = -52.059381 kcal Electronic energy + Delta-G solvation = -18570.290666 eV Core-core repulsion = 15638.200431 eV Total energy + Delta-G solvation = -2932.090235 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -38.94893 -38.82394 -34.84862 -32.50134 -32.15546 -31.30515 -30.25338 -28.00349 -25.28296 -24.07952 -23.25784 -21.41453 -20.75765 -19.52144 -17.47631 -16.60189 -16.03081 -15.83925 -15.23760 -15.05434 -15.02013 -14.65493 -14.52840 -13.93628 -13.75685 -13.09202 -12.83337 -12.54462 -12.45469 -12.29943 -11.99893 -11.62678 -11.57782 -11.11952 -11.06032 -10.97752 -10.92409 -10.74954 -10.35855 -10.26458 -9.86174 -9.19196 -9.09375 -8.69063 -8.58809 -8.00368 -7.56589 -6.15285 -4.25230 1.53254 2.57303 3.23108 3.25736 3.28861 3.30069 3.96997 4.01600 4.33649 4.34398 4.37695 4.74724 4.88753 5.02182 5.03908 5.13816 5.17145 5.21048 5.24343 5.38222 5.46843 5.48904 5.58450 5.65562 5.76756 5.90279 6.63185 6.78737 6.92927 7.00047 7.10924 7.39164 7.49863 7.64515 7.86923 8.11132 8.57181 8.72512 9.02708 9.42123 10.90679 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045026 B = 0.003213 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.716242 B = 8713.405805 C = 8907.488724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.266 3.734 3 H 0.049 0.951 4 C -0.536 4.536 5 H 0.061 0.939 6 C 0.067 3.933 7 N -0.883 5.883 8 Si 0.903 3.097 9 H -0.285 1.285 10 H -0.276 1.276 11 H -0.276 1.276 12 N -0.704 5.704 13 C 0.516 3.484 14 O -0.534 6.534 15 C -0.125 4.125 16 S -0.181 6.181 17 C -0.076 4.076 18 C -0.153 4.153 19 C 0.059 3.941 20 N -0.686 5.686 21 C 0.062 3.938 22 C -0.135 4.135 23 H 0.026 0.974 24 H 0.015 0.985 25 H 0.091 0.909 26 H 0.266 0.734 27 H 0.389 0.611 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.085 0.915 31 H 0.076 0.924 32 H 0.069 0.931 33 H 0.073 0.927 34 H 0.078 0.922 35 H 0.342 0.658 36 H 0.074 0.926 37 H 0.080 0.920 38 H 0.078 0.922 39 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.395 -6.782 19.490 21.100 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.164 3.836 3 H 0.067 0.933 4 C -0.575 4.575 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.520 5.520 8 Si 0.730 3.270 9 H -0.211 1.211 10 H -0.201 1.201 11 H -0.201 1.201 12 N -0.353 5.353 13 C 0.299 3.701 14 O -0.412 6.412 15 C -0.277 4.277 16 S 0.048 5.952 17 C -0.205 4.205 18 C -0.194 4.194 19 C -0.073 4.073 20 N -0.315 5.315 21 C -0.070 4.070 22 C -0.176 4.176 23 H 0.045 0.955 24 H 0.034 0.966 25 H 0.110 0.890 26 H 0.076 0.924 27 H 0.221 0.779 28 H 0.120 0.880 29 H 0.121 0.879 30 H 0.103 0.897 31 H 0.094 0.906 32 H 0.087 0.913 33 H 0.091 0.909 34 H 0.096 0.904 35 H 0.160 0.840 36 H 0.093 0.907 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 4.260 -5.127 19.621 20.723 hybrid contribution 0.259 -1.721 -1.731 2.455 sum 4.519 -6.847 17.890 19.682 Atomic orbital electron populations 1.22084 0.98366 0.99140 1.01013 1.18775 0.91087 0.94004 0.79701 0.93281 1.21169 1.32693 1.13327 0.90305 0.92108 1.24895 0.94765 0.94949 0.99075 1.69894 1.35657 1.22369 1.24075 0.86486 0.79175 0.79561 0.81746 1.21067 1.20147 1.20148 1.46464 1.65133 1.13540 1.10166 1.19520 0.79255 0.87423 0.83937 1.90704 1.50507 1.15562 1.84454 1.23608 1.05591 1.01837 0.96658 1.87512 1.87111 1.17631 1.02917 1.23319 1.01148 0.98758 0.97276 1.22617 0.98888 0.97679 1.00238 1.22068 1.01591 0.95242 0.88369 1.60666 1.13209 1.22398 1.35183 1.22057 0.95740 0.92654 0.96514 1.22056 1.03070 0.98434 0.94024 0.95453 0.96599 0.89038 0.92440 0.77877 0.87983 0.87944 0.89705 0.90559 0.91251 0.90867 0.90352 0.84015 0.90732 0.90139 0.90318 0.90938 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.70 9.26 37.16 0.34 -3.35 16 2 C 0.27 6.81 2.56 -69.09 -0.18 6.63 16 3 H 0.05 1.46 7.58 -51.92 -0.39 1.06 16 4 C -0.54 -14.21 8.73 -34.44 -0.30 -14.51 16 5 H 0.06 1.52 7.74 -52.49 -0.41 1.12 16 6 C 0.07 1.79 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.94 11.32 55.43 0.63 -24.31 16 8 Si 0.90 20.56 29.54 -169.99 -5.02 15.54 16 9 H -0.29 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 12 N -0.70 -14.62 5.07 -54.93 -0.28 -14.90 16 13 C 0.52 10.41 7.81 -10.98 -0.09 10.33 16 14 O -0.53 -13.17 15.53 5.56 0.09 -13.09 16 15 C -0.13 -1.82 6.14 36.01 0.22 -1.60 16 16 S -0.18 -2.67 20.29 -107.50 -2.18 -4.85 16 17 C -0.08 -0.76 2.72 -26.61 -0.07 -0.83 16 18 C -0.15 -1.33 5.24 -26.65 -0.14 -1.47 16 19 C 0.06 0.43 6.55 -3.83 -0.03 0.41 16 20 N -0.69 -5.15 6.87 -113.81 -0.78 -5.93 16 21 C 0.06 0.44 6.55 -3.83 -0.03 0.42 16 22 C -0.14 -1.18 5.37 -26.65 -0.14 -1.32 16 23 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 24 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 25 H 0.09 2.49 6.07 -51.93 -0.32 2.17 16 26 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.39 6.83 8.54 -40.82 -0.35 6.48 16 28 H 0.10 1.24 7.23 -51.92 -0.38 0.86 16 29 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 32 H 0.07 0.60 7.05 -51.93 -0.37 0.24 16 33 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 34 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.34 2.31 8.86 -39.29 -0.35 1.96 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 38 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 LS Contribution 327.12 15.07 4.93 4.93 Total: -1.00 -31.10 327.12 -9.46 -40.56 By element: Atomic # 1 Polarization: 11.99 SS G_CDS: -6.34 Total: 5.65 kcal Atomic # 6 Polarization: -3.11 SS G_CDS: -0.50 Total: -3.60 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: -0.43 Total: -45.13 kcal Atomic # 8 Polarization: -13.17 SS G_CDS: 0.09 Total: -13.09 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.02 Total: 15.54 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.18 Total: -4.85 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.10 -9.46 -40.56 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168103949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.504 kcal (2) G-P(sol) polarization free energy of solvation -31.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.059 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds