Wall clock time and date at job start Mon Mar 30 2020 05:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46497 * 109.47021 * 119.99638 * 2 1 3 13 13 C 1.34779 * 119.99943 * 275.00054 * 12 2 1 14 14 O 1.21283 * 120.00516 * 0.02562 * 13 12 2 15 15 C 1.50709 * 119.99796 * 180.02562 * 13 12 2 16 16 S 1.81401 * 109.46777 * 180.02562 * 15 13 12 17 17 C 1.81404 * 102.99827 * 179.97438 * 16 15 13 18 18 C 1.53117 * 109.51996 * 294.68193 * 17 16 15 19 19 C 1.53042 * 109.27647 * 182.43868 * 18 17 16 20 20 N 1.46846 * 109.52413 * 59.17973 * 19 18 17 21 21 C 1.46853 * 111.19916 * 298.25947 * 20 19 18 22 22 C 1.53043 * 109.51996 * 61.73561 * 21 20 19 23 23 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 24 24 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 25 25 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 26 26 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 27 27 H 0.96997 * 120.00208 * 95.00345 * 12 2 1 28 28 H 1.08998 * 109.46848 * 299.99555 * 15 13 12 29 29 H 1.08995 * 109.47381 * 59.99830 * 15 13 12 30 30 H 1.08996 * 109.52064 * 54.86817 * 17 16 15 31 31 H 1.08995 * 109.50578 * 302.37893 * 18 17 16 32 32 H 1.08999 * 109.50830 * 62.50124 * 18 17 16 33 33 H 1.09001 * 109.46346 * 299.16426 * 19 18 17 34 34 H 1.09001 * 109.46152 * 179.19527 * 19 18 17 35 35 H 1.00903 * 110.99911 * 62.35178 * 20 19 18 36 36 H 1.09004 * 109.45859 * 301.72915 * 21 20 19 37 37 H 1.08998 * 109.45562 * 181.74868 * 21 20 19 38 38 H 1.09003 * 109.49726 * 180.88026 * 22 21 20 39 39 H 1.09004 * 109.50206 * 60.77083 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0183 -0.6905 1.1962 13 6 2.1470 -0.0181 2.3571 14 8 1.8581 1.1586 2.4117 15 6 2.6499 -0.7283 3.5876 16 16 2.7100 0.4372 4.9763 17 6 3.3276 -0.5859 6.3411 18 6 2.2971 -1.6674 6.6768 19 6 2.7962 -2.4886 7.8679 20 7 2.9986 -1.6047 9.0230 21 6 4.0186 -0.5867 8.7404 22 6 3.5559 0.2911 7.5752 23 1 -0.3633 -1.0277 0.0005 24 1 -0.3633 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8900 26 1 0.7088 1.1611 -3.4845 27 1 2.2490 -1.6316 1.1527 28 1 1.9776 -1.5506 3.8326 29 1 3.6492 -1.1202 3.3980 30 1 4.2671 -1.0548 6.0486 31 1 1.3467 -1.1983 6.9309 32 1 2.1619 -2.3213 5.8152 33 1 3.7398 -2.9686 7.6082 34 1 2.0581 -3.2505 8.1185 35 1 2.1301 -1.1771 9.3076 36 1 4.9564 -1.0757 8.4766 37 1 4.1681 0.0327 9.6247 38 1 4.3201 1.0367 7.3556 39 1 2.6253 0.7912 7.8436 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168103949.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:32 Heat of formation + Delta-G solvation = -74.382252 kcal Electronic energy + Delta-G solvation = -18571.258659 eV Core-core repulsion = 15638.200431 eV Total energy + Delta-G solvation = -2933.058228 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.55389 -39.58198 -36.77669 -34.40401 -32.88917 -32.13816 -31.69684 -29.65188 -27.36670 -24.76128 -23.93232 -23.20762 -21.53619 -21.25330 -19.10422 -17.79863 -17.61556 -17.08593 -16.71970 -16.43285 -16.01422 -15.63314 -15.44847 -15.16131 -14.82704 -14.53964 -14.36553 -14.05923 -13.59365 -13.27401 -13.19315 -13.04196 -12.88041 -12.81066 -12.63504 -12.29695 -12.22276 -12.16318 -11.72823 -11.59042 -11.15700 -10.91789 -10.83932 -10.61514 -9.84725 -9.32439 -8.71812 -8.19875 -6.38266 0.45824 1.44155 1.46385 1.54328 1.56376 1.67612 2.32776 2.56754 3.10557 3.40917 3.63284 3.66127 3.86802 4.02757 4.11538 4.17893 4.22551 4.40558 4.43090 4.57635 4.70810 4.72009 4.87041 4.88117 4.97728 5.01805 5.05172 5.11812 5.25168 5.38425 5.55621 5.63612 5.85149 6.05761 6.06297 6.46244 6.68831 6.84743 7.28310 7.46347 8.86431 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045026 B = 0.003213 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 621.716242 B = 8713.405805 C = 8907.488724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.272 3.728 3 H -0.004 1.004 4 C -0.550 4.550 5 H 0.076 0.924 6 C 0.013 3.987 7 N -0.918 5.918 8 Si 0.975 3.025 9 H -0.287 1.287 10 H -0.270 1.270 11 H -0.262 1.262 12 N -0.699 5.699 13 C 0.510 3.490 14 O -0.585 6.585 15 C -0.103 4.103 16 S -0.255 6.255 17 C -0.054 4.054 18 C -0.149 4.149 19 C 0.064 3.936 20 N -0.690 5.690 21 C 0.069 3.931 22 C -0.132 4.132 23 H 0.043 0.957 24 H 0.010 0.990 25 H 0.067 0.933 26 H 0.266 0.734 27 H 0.408 0.592 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.095 0.905 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.089 0.911 35 H 0.346 0.654 36 H 0.079 0.921 37 H 0.092 0.908 38 H 0.074 0.926 39 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.517 -9.522 20.483 23.252 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.168 3.832 3 H 0.014 0.986 4 C -0.588 4.588 5 H 0.094 0.906 6 C -0.187 4.187 7 N -0.556 5.556 8 Si 0.799 3.201 9 H -0.212 1.212 10 H -0.195 1.195 11 H -0.187 1.187 12 N -0.349 5.349 13 C 0.296 3.704 14 O -0.466 6.466 15 C -0.254 4.254 16 S -0.026 6.026 17 C -0.182 4.182 18 C -0.190 4.190 19 C -0.068 4.068 20 N -0.319 5.319 21 C -0.063 4.063 22 C -0.173 4.173 23 H 0.062 0.938 24 H 0.029 0.971 25 H 0.086 0.914 26 H 0.075 0.925 27 H 0.243 0.757 28 H 0.151 0.849 29 H 0.149 0.851 30 H 0.113 0.887 31 H 0.085 0.915 32 H 0.092 0.908 33 H 0.096 0.904 34 H 0.107 0.893 35 H 0.165 0.835 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.093 0.907 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 5.394 -7.912 20.642 22.754 hybrid contribution -0.084 -0.824 -1.939 2.109 sum 5.310 -8.736 18.702 21.314 Atomic orbital electron populations 1.21903 0.98249 0.99582 0.99541 1.18355 0.91154 0.91865 0.81783 0.98564 1.21521 1.32835 1.13734 0.90684 0.90585 1.25844 0.94806 0.95568 1.02457 1.70055 1.36878 1.23948 1.24764 0.85356 0.78648 0.78720 0.77368 1.21236 1.19516 1.18683 1.46175 1.65109 1.14307 1.09280 1.20410 0.77958 0.86981 0.85089 1.90686 1.52404 1.18096 1.85420 1.23403 1.07448 1.01256 0.93286 1.87818 1.87949 1.21014 1.05809 1.23377 1.01564 0.98232 0.95052 1.22596 0.98023 0.97258 1.01105 1.22074 1.02079 0.95107 0.87500 1.60684 1.13572 1.22493 1.35126 1.22053 0.95703 0.92423 0.96084 1.22081 1.02634 0.98536 0.94077 0.93829 0.97115 0.91427 0.92485 0.75667 0.84931 0.85132 0.88702 0.91463 0.90792 0.90394 0.89270 0.83546 0.90287 0.88929 0.90749 0.91749 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.87 9.26 71.98 0.67 -6.20 16 2 C 0.27 14.21 2.56 44.24 0.11 14.33 16 3 H 0.00 -0.22 7.58 -2.38 -0.02 -0.24 16 4 C -0.55 -28.97 8.73 25.60 0.22 -28.75 16 5 H 0.08 3.68 7.74 -2.91 -0.02 3.66 16 6 C 0.01 0.72 5.30 84.66 0.45 1.17 16 7 N -0.92 -52.99 11.32 21.45 0.24 -52.75 16 8 Si 0.97 41.68 29.54 68.60 2.03 43.71 16 9 H -0.29 -12.24 7.11 99.48 0.71 -11.53 16 10 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 11 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 12 N -0.70 -28.70 5.07 -446.09 -2.26 -30.96 16 13 C 0.51 20.55 7.81 87.66 0.68 21.24 16 14 O -0.59 -29.86 15.53 -3.04 -0.05 -29.91 16 15 C -0.10 -2.81 6.14 71.24 0.44 -2.37 16 16 S -0.26 -7.41 20.29 -56.49 -1.15 -8.55 16 17 C -0.05 -0.97 2.72 30.67 0.08 -0.89 16 18 C -0.15 -2.22 5.24 30.65 0.16 -2.06 16 19 C 0.06 0.75 6.55 86.33 0.57 1.32 16 20 N -0.69 -8.53 6.87 -513.97 -3.53 -12.06 16 21 C 0.07 0.82 6.55 86.33 0.57 1.39 16 22 C -0.13 -2.10 5.37 30.64 0.16 -1.94 16 23 H 0.04 2.03 8.14 -2.39 -0.02 2.01 16 24 H 0.01 0.51 8.14 -2.39 -0.02 0.49 16 25 H 0.07 3.79 6.07 -2.39 -0.01 3.78 16 26 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 27 H 0.41 13.54 8.54 -92.71 -0.79 12.75 16 28 H 0.13 2.81 7.23 -2.39 -0.02 2.79 16 29 H 0.13 2.84 8.14 -2.39 -0.02 2.82 16 30 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.05 7.05 -2.39 -0.02 1.03 16 33 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 34 H 0.09 0.90 8.14 -2.39 -0.02 0.88 16 35 H 0.35 3.89 8.86 -89.69 -0.79 3.10 16 36 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 Total: -1.00 -69.56 327.12 -1.14 -70.70 By element: Atomic # 1 Polarization: 23.14 SS G_CDS: -0.54 Total: 22.60 kcal Atomic # 6 Polarization: -6.89 SS G_CDS: 4.11 Total: -2.77 kcal Atomic # 7 Polarization: -90.23 SS G_CDS: -5.55 Total: -95.78 kcal Atomic # 8 Polarization: -29.86 SS G_CDS: -0.05 Total: -29.91 kcal Atomic # 14 Polarization: 41.68 SS G_CDS: 2.03 Total: 43.71 kcal Atomic # 16 Polarization: -7.41 SS G_CDS: -1.15 Total: -8.55 kcal Total: -69.56 -1.14 -70.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168103949.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.679 kcal (2) G-P(sol) polarization free energy of solvation -69.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.703 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds