Wall clock time and date at job start Mon Mar 30 2020 05:04:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 H 1.08995 * 109.46887 * 54.99845 * 3 2 1 5 5 C 1.50694 * 109.47032 * 175.00140 * 3 2 1 6 6 H 1.08004 * 120.00063 * 120.00371 * 5 3 2 7 7 C 1.37876 * 120.00421 * 299.99573 * 5 3 2 8 8 N 1.31512 * 119.99484 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00419 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47118 * 59.99968 * 9 7 5 11 11 H 1.48499 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46904 * 299.99943 * 9 7 5 13 13 O 1.45205 * 109.46417 * 294.99902 * 3 2 1 14 14 C 1.34234 * 116.99692 * 90.00413 * 13 3 2 15 15 O 1.20822 * 120.00409 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99645 * 179.97438 * 14 13 3 17 17 O 1.42899 * 109.46854 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99753 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47013 * 179.97438 * 18 17 16 20 20 H 1.08997 * 110.83830 * 302.81040 * 19 18 17 21 21 C 1.54806 * 110.90888 * 179.15652 * 19 18 17 22 22 C 1.54099 * 104.19470 * 220.92551 * 21 19 18 23 23 O 1.43889 * 107.37252 * 358.10337 * 22 21 19 24 24 C 1.44388 * 106.89814 * 26.27302 * 23 22 21 25 25 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47093 * 300.00020 * 1 2 3 27 27 H 1.08994 * 109.47316 * 60.00234 * 1 2 3 28 28 H 1.09000 * 109.47190 * 239.99534 * 2 1 3 29 29 H 1.09004 * 109.47133 * 119.99699 * 2 1 3 30 30 H 0.96999 * 120.00185 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46892 * 59.99659 * 16 14 13 32 32 H 1.09000 * 109.47289 * 300.00035 * 16 14 13 33 33 H 1.09000 * 109.46778 * 60.00341 * 18 17 16 34 34 H 1.08993 * 109.47462 * 299.99998 * 18 17 16 35 35 H 1.09002 * 110.48575 * 339.60669 * 21 19 18 36 36 H 1.09004 * 110.48517 * 102.11658 * 21 19 18 37 37 H 1.09001 * 109.87936 * 117.39322 * 22 21 19 38 38 H 1.09001 * 109.88030 * 238.55007 * 22 21 19 39 39 H 1.09002 * 110.61854 * 201.57804 * 24 23 22 40 40 H 1.09000 * 110.62045 * 78.73713 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8812 1.3817 10 1 6.4995 2.2815 1.3820 11 1 6.3978 0.2178 2.6508 12 1 6.5974 0.1472 0.2348 13 8 1.6559 2.0916 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2193 2.7370 -0.2656 16 6 0.0074 3.4224 -2.5085 17 8 -1.2710 4.0169 -2.2758 18 6 -1.8054 4.7077 -3.4069 19 6 -3.1688 5.3002 -3.0453 20 1 -3.8515 4.5222 -2.7038 21 6 -3.7696 6.0754 -4.2431 22 6 -4.3878 7.3351 -3.6061 23 8 -4.1893 7.2391 -2.1842 24 6 -3.0220 6.4147 -1.9781 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0617 2.9494 31 1 -0.0712 2.6982 -3.3194 32 1 0.7244 4.1967 -2.7812 33 1 -1.9212 4.0106 -4.2368 34 1 -1.1261 5.5090 -3.6976 35 1 -2.9873 6.3503 -4.9506 36 1 -4.5370 5.4794 -4.7369 37 1 -3.8893 8.2261 -3.9879 38 1 -5.4535 7.3791 -3.8307 39 1 -3.0255 5.9884 -0.9749 40 1 -2.1114 6.9897 -2.1463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187924375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:37 Heat of formation + Delta-G solvation = -188.660286 kcal Electronic energy + Delta-G solvation = -21204.617003 eV Core-core repulsion = 17791.557686 eV Total energy + Delta-G solvation = -3413.059317 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.86344 -39.52053 -37.68203 -35.64498 -33.52821 -33.13109 -31.39063 -29.92673 -28.38812 -27.02366 -25.46734 -23.21102 -22.71559 -21.13145 -20.73231 -19.46427 -17.41151 -17.04140 -16.80534 -16.24083 -16.08729 -15.91332 -15.39010 -15.22802 -14.77907 -14.47649 -13.88633 -13.39170 -13.13941 -12.85199 -12.48941 -12.32673 -11.90222 -11.77070 -11.69398 -11.45831 -11.29702 -11.18908 -11.02248 -10.94433 -10.91258 -10.66572 -10.30436 -9.91588 -9.79902 -9.77457 -9.55962 -9.35452 -8.82692 -8.46451 -6.19542 -4.27154 2.89411 2.97682 3.25325 3.29325 3.32394 3.71681 4.08936 4.28031 4.34630 4.48810 4.68317 4.87430 4.95299 5.05955 5.11931 5.14423 5.25860 5.27307 5.33780 5.41614 5.51139 5.60174 5.66256 5.80225 5.90547 6.23416 6.30077 6.45753 6.63170 6.86438 6.92511 6.99487 7.16567 7.24578 7.60350 7.72623 7.94474 8.14131 8.62893 8.87224 9.38012 10.87179 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.003258 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.627359 B = 8593.200868 C = 8792.348351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.523 4.523 6 H 0.068 0.932 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.274 1.274 13 O -0.356 6.356 14 C 0.450 3.550 15 O -0.496 6.496 16 C 0.069 3.931 17 O -0.364 6.364 18 C 0.072 3.928 19 C -0.120 4.120 20 H 0.096 0.904 21 C -0.149 4.149 22 C 0.047 3.953 23 O -0.380 6.380 24 C 0.055 3.945 25 H 0.033 0.967 26 H 0.053 0.947 27 H 0.031 0.969 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.056 0.944 34 H 0.055 0.945 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.058 0.942 38 H 0.083 0.917 39 H 0.102 0.898 40 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.914 8.938 -13.592 19.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.561 4.561 6 H 0.086 0.914 7 C -0.139 4.139 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.200 1.200 11 H -0.210 1.210 12 H -0.199 1.199 13 O -0.273 6.273 14 C 0.292 3.708 15 O -0.384 6.384 16 C -0.008 4.008 17 O -0.283 6.283 18 C -0.005 4.005 19 C -0.139 4.139 20 H 0.115 0.885 21 C -0.187 4.187 22 C -0.030 4.030 23 O -0.299 6.299 24 C -0.022 4.022 25 H 0.052 0.948 26 H 0.072 0.928 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.076 0.924 38 H 0.101 0.899 39 H 0.120 0.880 40 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -11.295 8.901 -12.734 19.208 hybrid contribution 1.166 -0.218 -0.276 1.218 sum -10.129 8.683 -13.010 18.635 Atomic orbital electron populations 1.21860 0.98283 0.99032 1.00836 1.22030 0.92687 0.99292 1.03394 1.20708 0.94982 0.88748 0.78453 0.93406 1.20997 0.89594 1.39211 1.06321 0.91357 1.24888 0.99278 0.94735 0.95031 1.69879 1.35510 1.37631 1.09472 0.86325 0.83794 0.78487 0.77476 1.19985 1.21016 1.19942 1.86443 1.33707 1.62628 1.44532 1.22720 0.81348 0.77727 0.89052 1.90636 1.55098 1.57258 1.35379 1.21723 0.86297 0.97859 0.94947 1.87973 1.33050 1.71382 1.35903 1.22482 0.93803 0.95495 0.88732 1.22696 0.96378 0.98729 0.96051 0.88519 1.22929 1.01033 0.96831 0.97894 1.23155 1.01108 0.96912 0.81853 1.88926 1.47254 1.71599 1.22144 1.23614 0.88314 0.89782 1.00440 0.94783 0.92768 0.94961 0.93949 0.87277 0.92277 0.89638 0.89517 0.92549 0.92710 0.90341 0.90033 0.92382 0.89885 0.87984 0.91968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.57 37.16 0.32 -2.85 16 2 C -0.14 -3.38 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.55 8.90 -34.44 -0.31 -14.85 16 6 H 0.07 1.86 7.81 -52.48 -0.41 1.45 16 7 C 0.06 1.72 5.29 -17.82 -0.09 1.63 16 8 N -0.89 -25.00 11.29 55.43 0.63 -24.38 16 9 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 13 O -0.36 -8.33 9.81 -39.27 -0.39 -8.72 16 14 C 0.45 9.37 6.49 36.01 0.23 9.60 16 15 O -0.50 -11.85 13.64 -25.47 -0.35 -12.19 16 16 C 0.07 1.01 6.53 36.01 0.24 1.25 16 17 O -0.36 -5.36 9.73 -55.19 -0.54 -5.89 16 18 C 0.07 0.72 5.27 37.16 0.20 0.91 16 19 C -0.12 -1.17 3.41 -88.61 -0.30 -1.47 16 20 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 21 C -0.15 -1.06 6.60 -25.21 -0.17 -1.23 16 22 C 0.05 0.38 7.70 37.73 0.29 0.67 16 23 O -0.38 -4.53 11.54 -35.23 -0.41 -4.94 16 24 C 0.05 0.62 7.03 38.21 0.27 0.88 16 25 H 0.03 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.05 1.27 7.80 -51.93 -0.40 0.86 16 27 H 0.03 0.69 6.06 -51.93 -0.31 0.37 16 28 H 0.04 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 30 H 0.27 7.11 8.31 -40.82 -0.34 6.78 16 31 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.05 0.46 8.10 -51.93 -0.42 0.04 16 35 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 36 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 37 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 38 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.10 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.06 0.65 8.02 -51.93 -0.42 0.24 16 LS Contribution 328.86 15.07 4.96 4.96 Total: -1.00 -31.72 328.86 -7.07 -38.79 By element: Atomic # 1 Polarization: 6.05 SS G_CDS: -6.42 Total: -0.37 kcal Atomic # 6 Polarization: -3.58 SS G_CDS: 0.46 Total: -3.12 kcal Atomic # 7 Polarization: -25.00 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.68 Total: -31.74 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.72 -7.07 -38.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.875 kcal (2) G-P(sol) polarization free energy of solvation -31.716 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.591 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds