Wall clock time and date at job start Mon Mar 30 2020 05:04:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.47255 * 2 1 4 4 H 1.08995 * 109.46887 * 54.99845 * 3 2 1 5 5 C 1.50694 * 109.47032 * 175.00140 * 3 2 1 6 6 H 1.08004 * 120.00063 * 120.00371 * 5 3 2 7 7 C 1.37876 * 120.00421 * 299.99573 * 5 3 2 8 8 N 1.31512 * 119.99484 * 0.02562 * 7 5 3 9 9 Si 1.86797 * 120.00419 * 180.02562 * 7 5 3 10 10 H 1.48506 * 109.47118 * 59.99968 * 9 7 5 11 11 H 1.48499 * 109.47289 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46904 * 299.99943 * 9 7 5 13 13 O 1.45205 * 109.46417 * 294.99902 * 3 2 1 14 14 C 1.34234 * 116.99692 * 90.00413 * 13 3 2 15 15 O 1.20822 * 120.00409 * 359.97438 * 14 13 3 16 16 C 1.50701 * 119.99645 * 179.97438 * 14 13 3 17 17 O 1.42899 * 109.46854 * 179.97438 * 16 14 13 18 18 C 1.42905 * 113.99753 * 179.97438 * 17 16 14 19 19 C 1.52999 * 109.47013 * 179.97438 * 18 17 16 20 20 H 1.08997 * 110.83830 * 302.81040 * 19 18 17 21 21 C 1.54806 * 110.90888 * 179.15652 * 19 18 17 22 22 C 1.54099 * 104.19470 * 220.92551 * 21 19 18 23 23 O 1.43889 * 107.37252 * 358.10337 * 22 21 19 24 24 C 1.44388 * 106.89814 * 26.27302 * 23 22 21 25 25 H 1.08998 * 109.47210 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.47093 * 300.00020 * 1 2 3 27 27 H 1.08994 * 109.47316 * 60.00234 * 1 2 3 28 28 H 1.09000 * 109.47190 * 239.99534 * 2 1 3 29 29 H 1.09004 * 109.47133 * 119.99699 * 2 1 3 30 30 H 0.96999 * 120.00185 * 179.97438 * 8 7 5 31 31 H 1.09000 * 109.46892 * 59.99659 * 16 14 13 32 32 H 1.09000 * 109.47289 * 300.00035 * 16 14 13 33 33 H 1.09000 * 109.46778 * 60.00341 * 18 17 16 34 34 H 1.08993 * 109.47462 * 299.99998 * 18 17 16 35 35 H 1.09002 * 110.48575 * 339.60669 * 21 19 18 36 36 H 1.09004 * 110.48517 * 102.11658 * 21 19 18 37 37 H 1.09001 * 109.87936 * 117.39322 * 22 21 19 38 38 H 1.09001 * 109.88030 * 238.55007 * 22 21 19 39 39 H 1.09002 * 110.61854 * 201.57804 * 24 23 22 40 40 H 1.09000 * 110.62045 * 78.73713 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4443 0.1238 6 1 4.1472 1.8889 -0.6523 7 6 4.1433 0.8784 1.2279 8 7 3.4063 0.3367 2.1728 9 14 6.0050 0.8812 1.3817 10 1 6.4995 2.2815 1.3820 11 1 6.3978 0.2178 2.6508 12 1 6.5974 0.1472 0.2348 13 8 1.6559 2.0916 -1.2408 14 6 0.4727 2.7254 -1.2560 15 8 -0.2193 2.7370 -0.2656 16 6 0.0074 3.4224 -2.5085 17 8 -1.2710 4.0169 -2.2758 18 6 -1.8054 4.7077 -3.4069 19 6 -3.1688 5.3002 -3.0453 20 1 -3.8515 4.5222 -2.7038 21 6 -3.7696 6.0754 -4.2431 22 6 -4.3878 7.3351 -3.6061 23 8 -4.1893 7.2391 -2.1842 24 6 -3.0220 6.4147 -1.9781 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 3.8293 -0.0617 2.9494 31 1 -0.0712 2.6982 -3.3194 32 1 0.7244 4.1967 -2.7812 33 1 -1.9212 4.0106 -4.2368 34 1 -1.1261 5.5090 -3.6976 35 1 -2.9873 6.3503 -4.9506 36 1 -4.5370 5.4794 -4.7369 37 1 -3.8893 8.2261 -3.9879 38 1 -5.4535 7.3791 -3.8307 39 1 -3.0255 5.9884 -0.9749 40 1 -2.1114 6.9897 -2.1463 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187924375.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:36 Heat of formation + Delta-G solvation = -208.733670 kcal Electronic energy + Delta-G solvation = -21205.487451 eV Core-core repulsion = 17791.557686 eV Total energy + Delta-G solvation = -3413.929764 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.40085 -40.47764 -38.80160 -37.42879 -35.51636 -33.96006 -33.37102 -30.72489 -29.79438 -28.76972 -26.36693 -25.17597 -23.41642 -22.74734 -21.65873 -21.25204 -18.95131 -18.66628 -17.99612 -17.48577 -17.39877 -17.03958 -16.73071 -16.46179 -16.17116 -15.79553 -14.93621 -14.79582 -14.74415 -14.14768 -13.86065 -13.63455 -13.34673 -13.22121 -13.10700 -12.88020 -12.77290 -12.59352 -12.55120 -12.32987 -12.15027 -11.84570 -11.76456 -11.60231 -11.45614 -11.17350 -10.83533 -10.75700 -10.63368 -10.52433 -8.27210 -6.44668 1.34607 1.41725 1.46154 1.52732 1.63579 2.37664 2.84572 3.02368 3.13384 3.58419 3.77414 3.88548 3.99166 4.16776 4.20433 4.24077 4.30423 4.36204 4.38459 4.38907 4.49478 4.56234 4.65051 4.82286 4.82615 4.87363 4.88877 5.04815 5.07611 5.20475 5.20940 5.36974 5.51086 5.66398 5.89239 5.97356 6.03216 6.12319 6.61246 7.00656 7.27191 8.79433 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.036420 B = 0.003258 C = 0.003184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.627359 B = 8593.200868 C = 8792.348351 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.269 1.269 11 H -0.279 1.279 12 H -0.262 1.262 13 O -0.361 6.361 14 C 0.440 3.560 15 O -0.535 6.535 16 C 0.082 3.918 17 O -0.397 6.397 18 C 0.068 3.932 19 C -0.120 4.120 20 H 0.082 0.918 21 C -0.138 4.138 22 C 0.037 3.963 23 O -0.409 6.409 24 C 0.051 3.949 25 H 0.062 0.938 26 H 0.031 0.969 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.270 0.730 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.082 0.918 34 H 0.076 0.924 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.070 0.930 38 H 0.095 0.905 39 H 0.076 0.924 40 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.394 9.246 -16.237 21.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.173 3.827 4 H 0.022 0.978 5 C -0.588 4.588 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.194 1.194 11 H -0.204 1.204 12 H -0.187 1.187 13 O -0.278 6.278 14 C 0.284 3.716 15 O -0.425 6.425 16 C 0.005 3.995 17 O -0.317 6.317 18 C -0.008 4.008 19 C -0.139 4.139 20 H 0.100 0.900 21 C -0.175 4.175 22 C -0.039 4.039 23 O -0.329 6.329 24 C -0.026 4.026 25 H 0.081 0.919 26 H 0.050 0.950 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.139 0.861 32 H 0.135 0.865 33 H 0.100 0.900 34 H 0.094 0.906 35 H 0.118 0.882 36 H 0.115 0.885 37 H 0.089 0.911 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -10.795 9.223 -15.412 20.955 hybrid contribution 0.891 -0.236 0.544 1.070 sum -9.904 8.986 -14.868 19.998 Atomic orbital electron populations 1.21708 0.96378 1.00575 1.00006 1.21874 0.94326 0.98067 1.02501 1.20384 0.94579 0.89265 0.78494 0.97801 1.21317 0.90402 1.40107 1.07023 0.91287 1.25834 1.04353 0.93861 0.94333 1.70014 1.37595 1.37844 1.09884 0.85238 0.77529 0.78789 0.77888 1.19366 1.20392 1.18699 1.86425 1.35504 1.63143 1.42686 1.24083 0.79862 0.76771 0.90903 1.90621 1.55804 1.58563 1.37504 1.21789 0.87125 0.99013 0.91554 1.87944 1.33014 1.72103 1.38644 1.22757 0.93777 0.96347 0.87888 1.22686 0.96457 0.97966 0.96769 0.90002 1.22914 1.01841 0.95822 0.96927 1.23422 1.02307 0.98131 0.80063 1.88891 1.47444 1.71801 1.24721 1.23589 0.88552 0.90557 0.99888 0.91915 0.94961 0.94378 0.93185 0.89596 0.92030 0.86147 0.86457 0.90023 0.90581 0.88176 0.88501 0.91130 0.88715 0.90563 0.91353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.79 8.57 71.98 0.62 -5.17 16 2 C -0.13 -6.56 5.49 30.59 0.17 -6.39 16 3 C 0.23 12.35 2.25 29.85 0.07 12.42 16 4 H 0.00 0.26 7.16 -2.39 -0.02 0.24 16 5 C -0.55 -31.12 8.90 25.60 0.23 -30.90 16 6 H 0.07 3.78 7.81 -2.91 -0.02 3.75 16 7 C 0.02 0.88 5.29 84.65 0.45 1.33 16 8 N -0.92 -52.69 11.29 21.45 0.24 -52.45 16 9 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 11 H -0.28 -11.73 7.11 99.48 0.71 -11.03 16 12 H -0.26 -10.84 7.11 99.48 0.71 -10.14 16 13 O -0.36 -16.98 9.81 -51.45 -0.50 -17.48 16 14 C 0.44 18.29 6.49 71.24 0.46 18.75 16 15 O -0.53 -26.39 13.64 28.41 0.39 -26.00 16 16 C 0.08 2.20 6.53 71.24 0.47 2.67 16 17 O -0.40 -11.05 9.73 -129.90 -1.26 -12.31 16 18 C 0.07 1.16 5.27 71.98 0.38 1.54 16 19 C -0.12 -2.15 3.41 -9.49 -0.03 -2.18 16 20 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 21 C -0.14 -1.55 6.60 31.58 0.21 -1.34 16 22 C 0.04 0.53 7.70 72.35 0.56 1.09 16 23 O -0.41 -9.65 11.54 -148.98 -1.72 -11.36 16 24 C 0.05 1.14 7.03 72.67 0.51 1.65 16 25 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 26 H 0.03 1.55 7.80 -2.38 -0.02 1.53 16 27 H 0.04 1.62 6.06 -2.39 -0.01 1.61 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.38 16 29 H 0.09 4.76 5.95 -2.39 -0.01 4.75 16 30 H 0.27 14.60 8.31 -92.71 -0.77 13.83 16 31 H 0.12 2.43 8.14 -2.39 -0.02 2.41 16 32 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 33 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.08 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.10 0.72 7.86 -2.39 -0.02 0.70 16 36 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 40 H 0.07 1.40 8.02 -2.39 -0.02 1.38 16 Total: -1.00 -71.80 328.86 4.26 -67.54 By element: Atomic # 1 Polarization: 12.95 SS G_CDS: 1.01 Total: 13.96 kcal Atomic # 6 Polarization: -10.62 SS G_CDS: 4.08 Total: -6.54 kcal Atomic # 7 Polarization: -52.69 SS G_CDS: 0.24 Total: -52.45 kcal Atomic # 8 Polarization: -64.06 SS G_CDS: -3.10 Total: -67.16 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.80 4.26 -67.54 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924375.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.192 kcal (2) G-P(sol) polarization free energy of solvation -71.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.992 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds