Wall clock time and date at job start Mon Mar 30 2020 05:04:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46867 * 2 1 4 4 H 1.09000 * 109.46981 * 55.00157 * 3 2 1 5 5 C 1.50704 * 109.47271 * 174.99963 * 3 2 1 6 6 H 1.07991 * 119.99627 * 119.99722 * 5 3 2 7 7 C 1.37880 * 119.99632 * 299.99954 * 5 3 2 8 8 N 1.31517 * 120.00166 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99665 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46949 * 90.00089 * 9 7 5 11 11 H 1.48500 * 109.46830 * 210.00230 * 9 7 5 12 12 H 1.48501 * 109.46990 * 329.99927 * 9 7 5 13 13 O 1.45196 * 109.47146 * 294.99976 * 3 2 1 14 14 C 1.34231 * 117.00262 * 89.99798 * 13 3 2 15 15 O 1.20828 * 119.99845 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00154 * 180.02562 * 14 13 3 17 17 O 1.42905 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99778 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.46889 * 179.97438 * 18 17 16 20 20 H 1.09000 * 110.75011 * 57.01944 * 19 18 17 21 21 C 1.55306 * 110.84673 * 180.71206 * 19 18 17 22 22 C 1.54947 * 100.94174 * 152.32697 * 21 19 18 23 23 O 1.43649 * 105.13612 * 323.55538 * 22 21 19 24 24 C 1.43237 * 109.97028 * 24.42850 * 23 22 21 25 25 H 1.09004 * 109.46914 * 299.99633 * 1 2 3 26 26 H 1.08990 * 109.47095 * 60.00525 * 1 2 3 27 27 H 1.09004 * 109.46514 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47364 * 240.00258 * 2 1 3 29 29 H 1.09004 * 109.47351 * 119.99622 * 2 1 3 30 30 H 0.96994 * 119.99517 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47247 * 60.00272 * 16 14 13 32 32 H 1.09001 * 109.47358 * 299.99698 * 16 14 13 33 33 H 1.08997 * 109.47171 * 299.99768 * 18 17 16 34 34 H 1.08997 * 109.47442 * 59.99964 * 18 17 16 35 35 H 1.09001 * 111.12938 * 270.24242 * 21 19 18 36 36 H 1.09000 * 111.12526 * 34.40940 * 21 19 18 37 37 H 1.09001 * 110.31020 * 204.64540 * 22 21 19 38 38 H 1.08997 * 110.30967 * 82.47254 * 22 21 19 39 39 H 1.09005 * 109.83208 * 238.77512 * 24 23 22 40 40 H 1.08994 * 109.90801 * 117.84678 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8803 1.3812 10 1 6.4427 2.1132 2.0837 11 1 6.4391 -0.3108 2.1546 12 1 6.6131 0.8397 0.0270 13 8 1.6559 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2190 2.7376 -0.2653 16 6 0.0069 3.4215 -2.5088 17 8 -1.2710 4.0172 -2.2756 18 6 -1.8063 4.7062 -3.4074 19 6 -3.1690 5.3000 -3.0452 20 1 -3.0850 5.9624 -2.1837 21 6 -3.7889 6.0424 -4.2603 22 6 -5.3007 5.8991 -3.9526 23 8 -5.4425 4.5943 -3.3686 24 6 -4.2023 4.1838 -2.7813 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0610 2.9498 31 1 -0.0721 2.6969 -3.3192 32 1 0.7237 4.1958 -2.7822 33 1 -1.1269 5.5067 -3.7001 34 1 -1.9233 4.0078 -4.2360 35 1 -3.4888 7.0902 -4.2755 36 1 -3.5300 5.5480 -5.1966 37 1 -5.8822 5.9672 -4.8720 38 1 -5.6174 6.6662 -3.2460 39 1 -3.8664 3.2533 -3.2391 40 1 -4.3285 4.0430 -1.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000187924437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:42 Heat of formation + Delta-G solvation = -188.716658 kcal Electronic energy + Delta-G solvation = -21224.058930 eV Core-core repulsion = 17810.997168 eV Total energy + Delta-G solvation = -3413.061762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.88471 -39.53486 -37.69012 -35.64611 -33.52818 -33.14617 -31.38903 -29.97995 -28.40791 -27.02871 -25.48216 -23.21041 -22.60117 -21.13864 -20.81728 -19.46788 -17.43355 -17.08168 -16.85647 -16.33293 -16.17755 -15.86538 -15.37358 -15.02495 -14.74551 -14.52599 -13.78690 -13.46813 -12.96159 -12.92470 -12.84495 -12.11217 -11.93601 -11.90948 -11.56093 -11.44762 -11.28858 -11.21977 -11.12911 -10.99560 -10.94933 -10.67057 -10.29490 -9.81323 -9.78248 -9.70459 -9.55957 -9.35861 -8.81799 -8.46899 -6.19872 -4.27318 2.89335 2.97585 3.23555 3.29472 3.33753 3.65067 4.02650 4.19107 4.32910 4.56238 4.68623 4.89099 4.95207 5.03177 5.11777 5.13728 5.22721 5.29771 5.32857 5.40867 5.51672 5.58491 5.65876 5.81142 5.92174 6.23885 6.30496 6.46027 6.76619 6.86640 6.92856 6.99637 7.16743 7.24756 7.60463 7.72638 7.94455 8.14042 8.62887 8.87365 9.37890 10.86897 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.003257 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.034098 B = 8593.649301 C = 8988.323019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.136 4.136 3 C 0.223 3.777 4 H 0.048 0.952 5 C -0.522 4.522 6 H 0.069 0.931 7 C 0.063 3.937 8 N -0.887 5.887 9 Si 0.912 3.088 10 H -0.278 1.278 11 H -0.284 1.284 12 H -0.271 1.271 13 O -0.356 6.356 14 C 0.451 3.549 15 O -0.496 6.496 16 C 0.069 3.931 17 O -0.365 6.365 18 C 0.072 3.928 19 C -0.120 4.120 20 H 0.096 0.904 21 C -0.149 4.149 22 C 0.052 3.948 23 O -0.388 6.388 24 C 0.059 3.941 25 H 0.053 0.947 26 H 0.031 0.969 27 H 0.033 0.967 28 H 0.042 0.958 29 H 0.109 0.891 30 H 0.267 0.733 31 H 0.086 0.914 32 H 0.087 0.913 33 H 0.057 0.943 34 H 0.056 0.944 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.085 0.915 38 H 0.061 0.939 39 H 0.073 0.927 40 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.183 9.314 -13.172 19.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.174 4.174 3 C 0.171 3.829 4 H 0.066 0.934 5 C -0.560 4.560 6 H 0.087 0.913 7 C -0.140 4.140 8 N -0.525 5.525 9 Si 0.739 3.261 10 H -0.204 1.204 11 H -0.209 1.209 12 H -0.196 1.196 13 O -0.273 6.273 14 C 0.292 3.708 15 O -0.384 6.384 16 C -0.008 4.008 17 O -0.284 6.284 18 C -0.005 4.005 19 C -0.139 4.139 20 H 0.114 0.886 21 C -0.187 4.187 22 C -0.025 4.025 23 O -0.307 6.307 24 C -0.018 4.018 25 H 0.072 0.928 26 H 0.050 0.950 27 H 0.052 0.948 28 H 0.061 0.939 29 H 0.127 0.873 30 H 0.077 0.923 31 H 0.104 0.896 32 H 0.105 0.895 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.105 0.895 36 H 0.100 0.900 37 H 0.103 0.897 38 H 0.079 0.921 39 H 0.091 0.909 40 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.617 9.044 -12.477 19.299 hybrid contribution 1.279 0.087 0.020 1.282 sum -10.339 9.131 -12.457 18.586 Atomic orbital electron populations 1.21861 0.98269 0.99054 1.00830 1.22029 0.92701 0.99272 1.03401 1.20717 0.95005 0.88763 0.78453 0.93422 1.21036 0.89591 1.39098 1.06306 0.91306 1.24894 0.99282 0.94731 0.95061 1.69892 1.35418 1.37727 1.09447 0.86271 0.83806 0.77707 0.78336 1.20407 1.20926 1.19600 1.86441 1.33694 1.62621 1.44537 1.22720 0.81349 0.77716 0.89055 1.90637 1.55129 1.57254 1.35376 1.21725 0.86283 0.97868 0.94946 1.87974 1.33104 1.71435 1.35842 1.22475 0.93835 0.95564 0.88626 1.22714 0.94030 0.97780 0.99388 0.88552 1.23272 0.95574 1.01629 0.98235 1.23343 0.95446 0.85710 0.97971 1.88410 1.33309 1.33434 1.75581 1.23175 0.82532 0.96974 0.99081 0.92778 0.94952 0.94762 0.93934 0.87275 0.92340 0.89609 0.89503 0.92458 0.92630 0.89505 0.90009 0.89709 0.92095 0.90868 0.90613 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.57 37.16 0.32 -2.86 16 2 C -0.14 -3.39 5.49 -26.73 -0.15 -3.53 16 3 C 0.22 5.92 2.25 -27.88 -0.06 5.86 16 4 H 0.05 1.41 7.16 -51.93 -0.37 1.04 16 5 C -0.52 -14.52 8.90 -34.44 -0.31 -14.83 16 6 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 7 C 0.06 1.71 5.29 -17.82 -0.09 1.61 16 8 N -0.89 -25.01 11.29 55.43 0.63 -24.38 16 9 Si 0.91 20.89 29.54 -169.99 -5.02 15.87 16 10 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 12 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 13 O -0.36 -8.34 9.81 -39.26 -0.39 -8.73 16 14 C 0.45 9.39 6.49 36.01 0.23 9.63 16 15 O -0.50 -11.88 13.64 -25.48 -0.35 -12.23 16 16 C 0.07 1.02 6.53 36.01 0.24 1.25 16 17 O -0.36 -5.39 9.72 -55.18 -0.54 -5.92 16 18 C 0.07 0.72 5.25 37.16 0.20 0.92 16 19 C -0.12 -1.16 3.29 -88.67 -0.29 -1.45 16 20 H 0.10 0.96 8.14 -51.93 -0.42 0.54 16 21 C -0.15 -1.04 6.62 -24.48 -0.16 -1.21 16 22 C 0.05 0.42 7.78 38.19 0.30 0.72 16 23 O -0.39 -4.58 11.36 -35.23 -0.40 -4.98 16 24 C 0.06 0.67 7.26 37.88 0.27 0.95 16 25 H 0.05 1.27 7.80 -51.93 -0.40 0.86 16 26 H 0.03 0.69 6.06 -51.93 -0.31 0.38 16 27 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 28 H 0.04 1.02 8.14 -51.93 -0.42 0.60 16 29 H 0.11 2.94 5.95 -51.93 -0.31 2.63 16 30 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 31 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.48 8.07 -51.93 -0.42 0.07 16 35 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.08 0.51 8.04 -51.93 -0.42 0.09 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 39 H 0.07 0.84 7.76 -51.93 -0.40 0.44 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -31.82 328.76 -7.03 -38.85 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -6.41 Total: -0.48 kcal Atomic # 6 Polarization: -3.44 SS G_CDS: 0.49 Total: -2.95 kcal Atomic # 7 Polarization: -25.01 SS G_CDS: 0.63 Total: -24.38 kcal Atomic # 8 Polarization: -30.19 SS G_CDS: -1.67 Total: -31.86 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.82 -7.03 -38.85 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -149.864 kcal (2) G-P(sol) polarization free energy of solvation -31.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -181.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.717 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds