Wall clock time and date at job start Mon Mar 30 2020 05:04:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53002 * 109.46867 * 2 1 4 4 H 1.09000 * 109.46981 * 55.00157 * 3 2 1 5 5 C 1.50704 * 109.47271 * 174.99963 * 3 2 1 6 6 H 1.07991 * 119.99627 * 119.99722 * 5 3 2 7 7 C 1.37880 * 119.99632 * 299.99954 * 5 3 2 8 8 N 1.31517 * 120.00166 * 0.02562 * 7 5 3 9 9 Si 1.86804 * 119.99665 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.46949 * 90.00089 * 9 7 5 11 11 H 1.48500 * 109.46830 * 210.00230 * 9 7 5 12 12 H 1.48501 * 109.46990 * 329.99927 * 9 7 5 13 13 O 1.45196 * 109.47146 * 294.99976 * 3 2 1 14 14 C 1.34231 * 117.00262 * 89.99798 * 13 3 2 15 15 O 1.20828 * 119.99845 * 0.02562 * 14 13 3 16 16 C 1.50699 * 120.00154 * 180.02562 * 14 13 3 17 17 O 1.42905 * 109.46972 * 180.02562 * 16 14 13 18 18 C 1.42899 * 113.99778 * 180.02562 * 17 16 14 19 19 C 1.52999 * 109.46889 * 179.97438 * 18 17 16 20 20 H 1.09000 * 110.75011 * 57.01944 * 19 18 17 21 21 C 1.55306 * 110.84673 * 180.71206 * 19 18 17 22 22 C 1.54947 * 100.94174 * 152.32697 * 21 19 18 23 23 O 1.43649 * 105.13612 * 323.55538 * 22 21 19 24 24 C 1.43237 * 109.97028 * 24.42850 * 23 22 21 25 25 H 1.09004 * 109.46914 * 299.99633 * 1 2 3 26 26 H 1.08990 * 109.47095 * 60.00525 * 1 2 3 27 27 H 1.09004 * 109.46514 * 180.02562 * 1 2 3 28 28 H 1.08993 * 109.47364 * 240.00258 * 2 1 3 29 29 H 1.09004 * 109.47351 * 119.99622 * 2 1 3 30 30 H 0.96994 * 119.99517 * 180.02562 * 8 7 5 31 31 H 1.09000 * 109.47247 * 60.00272 * 16 14 13 32 32 H 1.09001 * 109.47358 * 299.99698 * 16 14 13 33 33 H 1.08997 * 109.47171 * 299.99768 * 18 17 16 34 34 H 1.08997 * 109.47442 * 59.99964 * 18 17 16 35 35 H 1.09001 * 111.12938 * 270.24242 * 21 19 18 36 36 H 1.09000 * 111.12526 * 34.40940 * 21 19 18 37 37 H 1.09001 * 110.31020 * 204.64540 * 22 21 19 38 38 H 1.08997 * 110.30967 * 82.47254 * 22 21 19 39 39 H 1.09005 * 109.83208 * 238.77512 * 24 23 22 40 40 H 1.08994 * 109.90801 * 117.84678 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9815 0.8418 5 6 3.5419 1.4444 0.1238 6 1 4.1471 1.8890 -0.6523 7 6 4.1433 0.8786 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8803 1.3812 10 1 6.4427 2.1132 2.0837 11 1 6.4391 -0.3108 2.1546 12 1 6.6131 0.8397 0.0270 13 8 1.6559 2.0917 -1.2407 14 6 0.4726 2.7254 -1.2560 15 8 -0.2190 2.7376 -0.2653 16 6 0.0069 3.4215 -2.5088 17 8 -1.2710 4.0172 -2.2756 18 6 -1.8063 4.7062 -3.4074 19 6 -3.1690 5.3000 -3.0452 20 1 -3.0850 5.9624 -2.1837 21 6 -3.7889 6.0424 -4.2603 22 6 -5.3007 5.8991 -3.9526 23 8 -5.4425 4.5943 -3.3686 24 6 -4.2023 4.1838 -2.7813 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0610 2.9498 31 1 -0.0721 2.6969 -3.3192 32 1 0.7237 4.1958 -2.7822 33 1 -1.1269 5.5067 -3.7001 34 1 -1.9233 4.0078 -4.2360 35 1 -3.4888 7.0902 -4.2755 36 1 -3.5300 5.5480 -5.1966 37 1 -5.8822 5.9672 -4.8720 38 1 -5.6174 6.6662 -3.2460 39 1 -3.8664 3.2533 -3.2391 40 1 -4.3285 4.0430 -1.7079 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000187924437.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:04:41 Heat of formation + Delta-G solvation = -208.841528 kcal Electronic energy + Delta-G solvation = -21224.931610 eV Core-core repulsion = 17810.997168 eV Total energy + Delta-G solvation = -3413.934442 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.40717 -40.51227 -38.81454 -37.43459 -35.51908 -33.97459 -33.37392 -30.77182 -29.82409 -28.78639 -26.39036 -25.18015 -23.28171 -22.73201 -21.75946 -21.28861 -18.95582 -18.67074 -18.00830 -17.60127 -17.46046 -17.07083 -16.79778 -16.31715 -16.22594 -15.66378 -15.08946 -14.78000 -14.39049 -14.28976 -14.07061 -13.49369 -13.39002 -13.28069 -13.12644 -12.88893 -12.80569 -12.61519 -12.56313 -12.19061 -12.13307 -11.98583 -11.76152 -11.69797 -11.46261 -11.18192 -10.82887 -10.73936 -10.53421 -10.52151 -8.27581 -6.44882 1.34034 1.41488 1.44298 1.53841 1.63465 2.37443 2.85244 3.01070 3.03912 3.48575 3.82988 3.87598 3.93623 4.16182 4.21422 4.23587 4.33057 4.34838 4.36119 4.38539 4.51963 4.55899 4.62845 4.80218 4.82139 4.89018 4.92093 4.99217 5.07009 5.20042 5.22438 5.36459 5.51103 5.66005 5.95757 5.98477 6.06137 6.11893 6.61246 7.00190 7.26968 8.79307 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.042866 B = 0.003257 C = 0.003114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 653.034098 B = 8593.649301 C = 8988.323019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.130 4.130 3 C 0.226 3.774 4 H 0.004 0.996 5 C -0.550 4.550 6 H 0.069 0.931 7 C 0.016 3.984 8 N -0.916 5.916 9 Si 0.983 3.017 10 H -0.273 1.273 11 H -0.276 1.276 12 H -0.261 1.261 13 O -0.360 6.360 14 C 0.440 3.560 15 O -0.535 6.535 16 C 0.082 3.918 17 O -0.397 6.397 18 C 0.067 3.933 19 C -0.121 4.121 20 H 0.087 0.913 21 C -0.136 4.136 22 C 0.041 3.959 23 O -0.412 6.412 24 C 0.056 3.944 25 H 0.031 0.969 26 H 0.037 0.963 27 H 0.062 0.938 28 H 0.049 0.951 29 H 0.086 0.914 30 H 0.270 0.730 31 H 0.120 0.880 32 H 0.119 0.881 33 H 0.083 0.917 34 H 0.074 0.926 35 H 0.109 0.891 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.483 10.156 -15.514 21.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.168 4.168 3 C 0.172 3.828 4 H 0.022 0.978 5 C -0.587 4.587 6 H 0.087 0.913 7 C -0.184 4.184 8 N -0.553 5.553 9 Si 0.806 3.194 10 H -0.199 1.199 11 H -0.201 1.201 12 H -0.185 1.185 13 O -0.277 6.277 14 C 0.284 3.716 15 O -0.425 6.425 16 C 0.005 3.995 17 O -0.317 6.317 18 C -0.008 4.008 19 C -0.139 4.139 20 H 0.105 0.895 21 C -0.173 4.173 22 C -0.035 4.035 23 O -0.333 6.333 24 C -0.021 4.021 25 H 0.051 0.949 26 H 0.056 0.944 27 H 0.081 0.919 28 H 0.068 0.932 29 H 0.104 0.896 30 H 0.080 0.920 31 H 0.137 0.863 32 H 0.137 0.863 33 H 0.101 0.899 34 H 0.092 0.908 35 H 0.128 0.872 36 H 0.113 0.887 37 H 0.121 0.879 38 H 0.084 0.916 39 H 0.087 0.913 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -10.937 9.905 -14.849 20.934 hybrid contribution 0.935 -0.113 0.743 1.200 sum -10.003 9.791 -14.105 19.872 Atomic orbital electron populations 1.21710 0.96402 1.00570 0.99998 1.21875 0.94302 0.98089 1.02509 1.20394 0.94613 0.89254 0.78493 0.97774 1.21341 0.90368 1.40007 1.06994 0.91290 1.25841 1.04361 0.93855 0.94362 1.70023 1.37529 1.37923 1.09875 0.85182 0.77529 0.77939 0.78758 1.19859 1.20147 1.18508 1.86424 1.35485 1.63132 1.42708 1.24073 0.79867 0.76761 0.90893 1.90621 1.55820 1.58559 1.37493 1.21791 0.87141 0.99032 0.91532 1.87944 1.33069 1.72164 1.38531 1.22750 0.94017 0.96408 0.87625 1.22724 0.93545 0.97143 1.00515 0.89451 1.23261 0.94021 1.02714 0.97309 1.23621 0.96884 0.84233 0.98728 1.88381 1.33650 1.35360 1.75882 1.23127 0.83364 0.97837 0.97747 0.94932 0.94413 0.91941 0.93190 0.89573 0.92037 0.86290 0.86334 0.89929 0.90761 0.87247 0.88671 0.87881 0.91632 0.91280 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.83 8.57 71.98 0.62 -5.21 16 2 C -0.13 -6.58 5.49 30.60 0.17 -6.42 16 3 C 0.23 12.35 2.25 29.85 0.07 12.41 16 4 H 0.00 0.28 7.16 -2.39 -0.02 0.26 16 5 C -0.55 -31.04 8.90 25.60 0.23 -30.82 16 6 H 0.07 3.78 7.81 -2.92 -0.02 3.76 16 7 C 0.02 0.85 5.29 84.65 0.45 1.30 16 8 N -0.92 -52.67 11.29 21.45 0.24 -52.43 16 9 Si 0.98 42.62 29.54 68.60 2.03 44.65 16 10 H -0.27 -11.56 7.11 99.48 0.71 -10.86 16 11 H -0.28 -11.57 7.11 99.48 0.71 -10.87 16 12 H -0.26 -10.82 7.11 99.48 0.71 -10.11 16 13 O -0.36 -17.01 9.81 -51.43 -0.50 -17.52 16 14 C 0.44 18.36 6.49 71.24 0.46 18.82 16 15 O -0.53 -26.43 13.64 28.39 0.39 -26.04 16 16 C 0.08 2.22 6.53 71.24 0.47 2.68 16 17 O -0.40 -11.12 9.72 -129.90 -1.26 -12.38 16 18 C 0.07 1.17 5.25 71.98 0.38 1.55 16 19 C -0.12 -2.12 3.29 -9.53 -0.03 -2.15 16 20 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 21 C -0.14 -1.49 6.62 32.05 0.21 -1.28 16 22 C 0.04 0.59 7.78 72.65 0.56 1.15 16 23 O -0.41 -9.56 11.36 -148.98 -1.69 -11.26 16 24 C 0.06 1.27 7.26 72.45 0.53 1.80 16 25 H 0.03 1.57 7.80 -2.38 -0.02 1.55 16 26 H 0.04 1.62 6.06 -2.39 -0.01 1.60 16 27 H 0.06 2.41 8.14 -2.38 -0.02 2.39 16 28 H 0.05 2.40 8.14 -2.39 -0.02 2.39 16 29 H 0.09 4.78 5.95 -2.39 -0.01 4.77 16 30 H 0.27 14.54 8.31 -92.71 -0.77 13.77 16 31 H 0.12 2.46 8.14 -2.39 -0.02 2.44 16 32 H 0.12 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 1.02 8.07 -2.39 -0.02 1.00 16 35 H 0.11 0.74 8.14 -2.39 -0.02 0.72 16 36 H 0.09 0.83 8.04 -2.39 -0.02 0.81 16 37 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 39 H 0.07 1.59 7.76 -2.38 -0.02 1.57 16 40 H 0.05 1.40 8.14 -2.39 -0.02 1.38 16 Total: -1.00 -71.81 328.76 4.31 -67.49 By element: Atomic # 1 Polarization: 12.62 SS G_CDS: 1.01 Total: 13.64 kcal Atomic # 6 Polarization: -10.26 SS G_CDS: 4.10 Total: -6.15 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: 0.24 Total: -52.43 kcal Atomic # 8 Polarization: -64.12 SS G_CDS: -3.07 Total: -67.19 kcal Atomic # 14 Polarization: 42.62 SS G_CDS: 2.03 Total: 44.65 kcal Total: -71.81 4.31 -67.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000187924437.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -141.349 kcal (2) G-P(sol) polarization free energy of solvation -71.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -213.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -208.842 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds