Wall clock time and date at job start Mon Mar 30 2020 04:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86802 * 119.99788 * 2 1 4 4 H 1.48499 * 109.47365 * 269.99936 * 3 2 1 5 5 H 1.48499 * 109.47320 * 30.00752 * 3 2 1 6 6 H 1.48507 * 109.46743 * 150.00133 * 3 2 1 7 7 C 1.37880 * 119.99894 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99590 * 179.97438 * 7 2 1 9 9 C 1.50698 * 120.00133 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47024 * 180.02562 * 9 7 2 11 11 S 1.81393 * 109.47217 * 180.02562 * 10 9 7 12 12 C 1.81390 * 103.00365 * 179.97438 * 11 10 9 13 13 H 1.08998 * 109.52575 * 54.91546 * 12 11 10 14 14 C 1.53042 * 109.50239 * 174.99676 * 12 11 10 15 15 C 1.53039 * 109.54198 * 181.31736 * 14 12 11 16 16 C 1.53196 * 109.33748 * 298.62051 * 15 14 12 17 17 N 1.46992 * 108.73878 * 54.61838 * 16 15 14 18 18 C 1.34784 * 120.60795 * 126.38575 * 17 16 15 19 19 O 1.21283 * 119.99359 * 180.02562 * 18 17 16 20 20 C 1.50691 * 120.00259 * 0.02599 * 18 17 16 21 21 N 1.46905 * 109.46840 * 179.97438 * 20 18 17 22 22 C 1.46922 * 118.75940 * 306.41163 * 17 16 15 23 23 H 0.97000 * 119.99880 * 359.97438 * 1 2 3 24 24 H 1.08996 * 109.47001 * 60.00099 * 9 7 2 25 25 H 1.08995 * 109.46705 * 299.99897 * 9 7 2 26 26 H 1.08995 * 109.47709 * 59.99180 * 10 9 7 27 27 H 1.09008 * 109.46775 * 299.99549 * 10 9 7 28 28 H 1.09006 * 109.45643 * 61.29369 * 14 12 11 29 29 H 1.08998 * 109.45200 * 301.33262 * 14 12 11 30 30 H 1.09002 * 109.49756 * 58.58775 * 15 14 12 31 31 H 1.09000 * 109.49883 * 178.65518 * 15 14 12 32 32 H 1.09001 * 109.58261 * 174.43824 * 16 15 14 33 33 H 1.08996 * 109.58319 * 294.86146 * 16 15 14 34 34 H 1.09001 * 109.47360 * 299.99598 * 20 18 17 35 35 H 1.08998 * 109.47712 * 59.99943 * 20 18 17 36 36 H 1.00906 * 110.99452 * 180.02562 * 21 20 18 37 37 H 1.00900 * 110.99730 * 303.94769 * 21 20 18 38 38 H 1.09004 * 109.58306 * 293.82373 * 22 17 16 39 39 H 1.08993 * 109.58723 * 173.39551 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6527 0.7002 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2511 -2.4992 -0.0005 10 6 2.2453 -3.6621 -0.0005 11 16 1.3384 -5.2330 -0.0013 12 6 2.6650 -6.4701 -0.0020 13 1 3.3342 -6.2872 0.8387 14 6 2.0585 -7.8697 0.1231 15 6 3.1787 -8.9119 0.1557 16 6 3.9722 -8.8448 -1.1530 17 7 4.4368 -7.4647 -1.3533 18 6 5.7414 -7.2043 -1.5698 19 8 6.1126 -6.0613 -1.7332 20 6 6.7387 -8.3333 -1.6088 21 7 8.0814 -7.7921 -1.8583 22 6 3.4526 -6.3746 -1.3125 23 1 -0.4850 0.8401 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6248 -2.5570 0.8897 26 1 2.8721 -3.6043 0.8893 27 1 2.8720 -3.6043 -0.8906 28 1 1.4087 -8.0614 -0.7308 29 1 1.4773 -7.9325 1.0431 30 1 3.8430 -8.7060 0.9950 31 1 2.7471 -9.9064 0.2688 32 1 4.8298 -9.5151 -1.0951 33 1 3.3315 -9.1388 -1.9843 34 1 6.7301 -8.8589 -0.6540 35 1 6.4725 -9.0260 -2.4072 36 1 8.7687 -8.5303 -1.8895 37 1 8.0992 -7.2459 -2.7065 38 1 2.7695 -6.4673 -2.1569 39 1 3.9677 -5.4153 -1.3601 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000212782842.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:25 Heat of formation + Delta-G solvation = -50.483054 kcal Electronic energy + Delta-G solvation = -18801.270096 eV Core-core repulsion = 15869.248215 eV Total energy + Delta-G solvation = -2932.021881 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -40.31148 -37.57773 -34.39924 -33.65915 -33.05007 -31.48665 -30.75879 -27.05856 -25.43803 -24.77191 -23.32495 -21.58410 -20.57796 -19.19531 -17.80743 -16.48472 -16.42980 -15.99480 -15.66135 -15.07768 -14.78815 -14.48593 -14.35456 -14.28366 -13.89278 -13.54233 -13.41043 -13.02783 -12.82908 -12.50262 -12.16382 -11.71988 -11.49212 -11.17967 -11.08445 -10.99173 -10.87505 -10.49127 -10.17905 -10.00092 -9.62432 -9.44347 -9.05624 -9.03441 -8.80028 -8.38254 -7.20193 -6.02423 -4.06478 2.04979 2.48297 2.76676 3.26157 3.33329 3.39266 3.43856 4.14541 4.29894 4.46133 4.54216 4.62077 4.64221 4.77850 4.84512 4.96530 5.08759 5.22545 5.30910 5.33332 5.50947 5.58446 5.68715 5.78499 5.94928 6.06258 6.09804 6.23709 6.24849 6.62918 6.77329 7.05528 7.22448 7.59726 7.67835 7.94170 8.05088 8.31748 8.98598 9.57465 11.08419 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.020674 B = 0.004145 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1354.031220 B = 6753.551824 C = 7958.876086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.896 3.104 4 H -0.279 1.279 5 H -0.285 1.285 6 H -0.273 1.273 7 C -0.520 4.520 8 H 0.058 0.942 9 C 0.038 3.962 10 C -0.060 4.060 11 S -0.272 6.272 12 C -0.074 4.074 13 H 0.085 0.915 14 C -0.098 4.098 15 C -0.131 4.131 16 C 0.106 3.894 17 N -0.613 5.613 18 C 0.508 3.492 19 O -0.521 6.521 20 C 0.047 3.953 21 N -0.834 5.834 22 C 0.118 3.882 23 H 0.262 0.738 24 H 0.026 0.974 25 H 0.026 0.974 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.069 0.931 31 H 0.080 0.920 32 H 0.083 0.917 33 H 0.072 0.928 34 H 0.101 0.899 35 H 0.055 0.945 36 H 0.347 0.653 37 H 0.352 0.648 38 H 0.079 0.921 39 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.394 -23.510 -2.909 25.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.724 3.276 4 H -0.205 1.205 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.560 4.560 8 H 0.076 0.924 9 C 0.000 4.000 10 C -0.208 4.208 11 S -0.041 6.041 12 C -0.204 4.204 13 H 0.103 0.897 14 C -0.136 4.136 15 C -0.171 4.171 16 C -0.017 4.017 17 N -0.349 5.349 18 C 0.295 3.705 19 O -0.395 6.395 20 C -0.087 4.087 21 N -0.367 5.367 22 C -0.006 4.006 23 H 0.072 0.928 24 H 0.045 0.955 25 H 0.044 0.956 26 H 0.086 0.914 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.088 0.912 31 H 0.099 0.901 32 H 0.102 0.898 33 H 0.091 0.909 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.160 0.840 37 H 0.166 0.834 38 H 0.098 0.902 39 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.229 -22.538 -2.299 24.103 hybrid contribution 1.601 0.488 -0.771 1.843 sum 9.830 -22.050 -3.070 24.336 Atomic orbital electron populations 1.69976 1.06066 1.26820 1.50206 1.25003 0.94888 0.99286 0.95037 0.86523 0.79812 0.83072 0.78215 1.20527 1.21115 1.19765 1.21116 0.93085 0.90260 1.51555 0.92407 1.18898 0.93347 0.89302 0.98470 1.23735 1.01347 0.92344 1.03365 1.86897 1.16318 1.03225 1.97698 1.23436 0.98836 0.97690 1.00398 0.89676 1.21325 0.97372 0.91316 1.03612 1.21944 0.97895 0.99656 0.97590 1.21797 0.99300 0.82517 0.98127 1.48266 1.06959 1.07894 1.71801 1.20645 0.82446 0.90692 0.76710 1.90749 1.78254 1.22387 1.48157 1.21647 0.89687 0.94733 1.02619 1.58290 1.04150 1.28266 1.45972 1.22084 0.90369 0.91526 0.96596 0.92827 0.95534 0.95582 0.91377 0.91194 0.90815 0.90517 0.91237 0.90098 0.89844 0.90947 0.88141 0.92675 0.83960 0.83407 0.90249 0.88529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.14 13.29 55.43 0.74 -26.41 16 2 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 3 Si 0.90 22.05 29.54 -169.99 -5.02 17.03 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 7 C -0.52 -15.03 9.11 -34.44 -0.31 -15.34 16 8 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 9 C 0.04 1.03 4.98 -27.88 -0.14 0.89 16 10 C -0.06 -1.31 5.60 37.16 0.21 -1.10 16 11 S -0.27 -4.97 21.15 -107.50 -2.27 -7.25 16 12 C -0.07 -1.03 2.80 -26.61 -0.07 -1.10 16 13 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 14 C -0.10 -1.02 5.17 -26.69 -0.14 -1.15 16 15 C -0.13 -0.96 6.08 -26.61 -0.16 -1.13 16 16 C 0.11 0.76 6.34 -3.67 -0.02 0.73 16 17 N -0.61 -6.93 2.97 -172.72 -0.51 -7.45 16 18 C 0.51 6.49 7.74 -10.99 -0.08 6.40 16 19 O -0.52 -9.21 15.62 5.55 0.09 -9.12 16 20 C 0.05 0.39 5.61 -4.98 -0.03 0.36 16 21 N -0.83 -7.47 9.25 -11.41 -0.11 -7.57 16 22 C 0.12 1.66 5.55 -3.71 -0.02 1.63 16 23 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 24 H 0.03 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 27 H 0.07 1.51 7.32 -51.92 -0.38 1.13 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.39 5.94 -51.93 -0.31 0.08 16 33 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.10 0.67 7.69 -51.93 -0.40 0.27 16 35 H 0.06 0.32 7.94 -51.93 -0.41 -0.10 16 36 H 0.35 1.99 9.08 -39.29 -0.36 1.63 16 37 H 0.35 3.29 8.69 -39.29 -0.34 2.95 16 38 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 39 H 0.10 1.65 6.06 -51.93 -0.31 1.34 16 LS Contribution 327.78 15.07 4.94 4.94 Total: -1.00 -34.03 327.78 -9.31 -43.33 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.28 Total: 0.67 kcal Atomic # 6 Polarization: -7.30 SS G_CDS: -0.87 Total: -8.17 kcal Atomic # 7 Polarization: -41.54 SS G_CDS: 0.12 Total: -41.43 kcal Atomic # 8 Polarization: -9.21 SS G_CDS: 0.09 Total: -9.12 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Atomic # 16 Polarization: -4.97 SS G_CDS: -2.27 Total: -7.25 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -34.03 -9.31 -43.33 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000212782842.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.150 kcal (2) G-P(sol) polarization free energy of solvation -34.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.333 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.483 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds