Wall clock time and date at job start Mon Mar 30 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47036 * 2 1 4 4 C 1.46891 * 111.00197 * 199.79385 * 3 2 1 5 5 C 1.50702 * 109.47282 * 66.04367 * 4 3 2 6 6 H 1.08008 * 119.99551 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00456 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99888 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47284 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46949 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.47134 * 240.00147 * 9 7 5 13 13 C 1.38691 * 111.00024 * 75.83563 * 3 2 1 14 14 N 1.31686 * 119.79425 * 68.00802 * 13 3 2 15 15 C 1.34112 * 119.79257 * 179.97438 * 14 13 3 16 16 C 1.40409 * 120.85640 * 180.02562 * 15 14 13 17 17 C 1.36214 * 119.76348 * 180.02562 * 16 15 14 18 18 C 1.39238 * 120.89646 * 0.02562 * 17 16 15 19 19 C 1.36210 * 120.90005 * 359.97365 * 18 17 16 20 20 C 1.40411 * 119.76545 * 0.02562 * 19 18 17 21 21 N 1.34110 * 120.86681 * 180.02562 * 20 19 18 22 22 C 1.31680 * 119.79413 * 179.97438 * 21 20 19 23 23 N 1.38691 * 119.79851 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46969 * 54.86240 * 1 2 3 25 25 H 1.08996 * 109.46690 * 174.86141 * 1 2 3 26 26 H 1.08998 * 109.47105 * 294.85990 * 1 2 3 27 27 H 1.08999 * 109.47210 * 240.00065 * 2 1 3 28 28 H 1.09000 * 109.47244 * 119.99573 * 2 1 3 29 29 H 1.09003 * 109.47657 * 186.04336 * 4 3 2 30 30 H 1.09007 * 109.47260 * 306.04853 * 4 3 2 31 31 H 0.96994 * 119.99896 * 179.97438 * 8 7 5 32 32 H 1.08008 * 120.11967 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.55207 * 180.27824 * 17 16 15 34 34 H 1.07999 * 119.54723 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.11713 * 180.02562 * 19 18 17 36 36 H 0.96995 * 119.99854 * 354.91363 * 23 22 21 37 37 H 0.97001 * 120.00377 * 174.90825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4117 1.4513 -0.4644 5 6 3.4771 1.0479 -1.9149 6 1 2.5747 0.7704 -2.4395 7 6 4.6889 1.0329 -2.5724 8 7 5.7879 1.3703 -1.9336 9 14 4.7698 0.5336 -4.3706 10 1 3.4053 0.2033 -4.8545 11 1 5.3203 1.6562 -5.1718 12 1 5.6481 -0.6551 -4.5152 13 6 1.8867 1.9592 1.2554 14 7 2.6240 1.5235 2.2557 15 6 2.4957 2.0791 3.4696 16 6 3.2709 1.6324 4.5517 17 6 3.1220 2.2123 5.7751 18 6 2.2089 3.2452 5.9704 19 6 1.4408 3.7034 4.9431 20 6 1.5675 3.1291 3.6681 21 7 0.8227 3.5634 2.6408 22 6 0.9591 3.0100 1.4538 23 7 0.1886 3.4586 0.3915 24 1 -0.3633 0.5915 -0.8404 25 1 -0.3632 -1.0235 -0.0920 26 1 -0.3633 0.4320 0.9324 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7838 2.4698 -0.3534 30 1 4.0255 0.7736 0.1292 31 1 6.6404 1.3594 -2.3960 32 1 3.9827 0.8317 4.4144 33 1 3.7232 1.8691 6.6040 34 1 2.1084 3.6891 6.9498 35 1 0.7368 4.5055 5.1087 36 1 -0.4996 4.1260 0.5394 37 1 0.3379 3.1052 -0.4994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230655831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:36 Heat of formation + Delta-G solvation = 77.452687 kcal Electronic energy + Delta-G solvation = -20676.897857 eV Core-core repulsion = 17647.272486 eV Total energy + Delta-G solvation = -3029.625371 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04139 -38.18856 -36.36128 -34.65501 -33.15033 -32.58784 -30.56343 -29.65038 -28.80263 -26.65999 -24.17823 -23.17191 -22.55564 -21.95148 -20.69025 -18.41656 -18.18050 -16.78816 -16.15773 -15.68659 -15.38121 -15.20725 -14.63669 -14.50071 -14.20408 -13.83223 -13.66438 -13.31599 -12.51369 -12.27225 -12.18013 -11.79331 -11.59968 -11.47306 -11.25314 -11.09472 -11.05515 -10.77593 -10.59945 -10.38983 -10.06432 -9.92576 -9.42887 -8.79901 -8.54584 -8.26363 -7.76178 -7.48733 -6.09144 -4.12507 0.62519 1.07406 2.32574 3.12915 3.27053 3.34748 3.38148 3.64704 4.17627 4.38801 4.43536 4.63530 4.75051 4.88246 5.08533 5.26097 5.31347 5.51653 5.56002 5.64755 5.76820 5.85176 6.03237 6.14296 6.28539 6.30078 6.49981 6.53437 6.56122 6.67420 6.89358 7.09518 7.30627 7.37399 7.58587 7.70455 7.84970 8.00212 8.04273 8.37331 8.42185 8.94067 9.51635 11.01514 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.005243 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.353238 B = 5338.887490 C = 5861.476413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.059 3.941 3 N -0.488 5.488 4 C 0.202 3.798 5 C -0.514 4.514 6 H 0.067 0.933 7 C 0.058 3.942 8 N -0.893 5.893 9 Si 0.900 3.100 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.284 1.284 13 C 0.274 3.726 14 N -0.433 5.433 15 C 0.037 3.963 16 C -0.061 4.061 17 C -0.137 4.137 18 C -0.097 4.097 19 C -0.106 4.106 20 C 0.124 3.876 21 N -0.526 5.526 22 C 0.411 3.589 23 N -0.818 5.818 24 H 0.062 0.938 25 H 0.054 0.946 26 H 0.037 0.963 27 H 0.097 0.903 28 H 0.037 0.963 29 H 0.027 0.973 30 H 0.012 0.988 31 H 0.262 0.738 32 H 0.132 0.868 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.759 1.931 10.766 14.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.068 4.068 3 N -0.213 5.213 4 C 0.078 3.922 5 C -0.553 4.553 6 H 0.085 0.915 7 C -0.144 4.144 8 N -0.532 5.532 9 Si 0.727 3.273 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.210 1.210 13 C 0.018 3.982 14 N -0.149 5.149 15 C -0.087 4.087 16 C -0.081 4.081 17 C -0.157 4.157 18 C -0.117 4.117 19 C -0.126 4.126 20 C 0.001 3.999 21 N -0.253 5.253 22 C 0.152 3.848 23 N -0.363 5.363 24 H 0.081 0.919 25 H 0.073 0.927 26 H 0.057 0.943 27 H 0.115 0.885 28 H 0.055 0.945 29 H 0.045 0.955 30 H 0.030 0.970 31 H 0.072 0.928 32 H 0.150 0.850 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.229 0.771 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.732 2.177 10.624 14.571 hybrid contribution 0.585 -0.439 -0.755 1.052 sum -9.147 1.738 9.869 13.568 Atomic orbital electron populations 1.21806 0.96321 1.00949 1.01166 1.22106 0.94142 0.87997 1.02522 1.60327 1.27460 1.18771 1.14731 1.19798 0.79330 0.97515 0.95548 1.21130 0.93604 1.45624 0.94897 0.91461 1.24985 0.95529 0.95369 0.98511 1.69986 0.98514 1.48045 1.36638 0.86418 0.78151 0.78119 0.84584 1.19562 1.21023 1.21050 1.20999 0.92311 0.93865 0.91044 1.68880 1.20838 1.26167 0.98967 1.19316 0.99404 0.97422 0.92595 1.20767 0.97373 0.99016 0.90938 1.20751 0.99986 0.97819 0.97148 1.20823 0.95581 0.96552 0.98740 1.20581 1.00885 1.00803 0.90353 1.19146 0.93283 0.94154 0.93341 1.68208 1.28475 1.30209 0.98422 1.19294 0.88760 0.88722 0.87982 1.42179 1.38561 1.46733 1.08817 0.91924 0.92740 0.94335 0.88475 0.94496 0.95500 0.97028 0.92824 0.85040 0.85608 0.85619 0.85198 0.77091 0.74226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.20 9.96 37.16 0.37 -1.83 16 2 C 0.06 1.13 5.50 -3.82 -0.02 1.11 16 3 N -0.49 -10.20 3.56 -174.06 -0.62 -10.82 16 4 C 0.20 5.20 4.40 -4.98 -0.02 5.18 16 5 C -0.51 -13.75 8.23 -34.44 -0.28 -14.03 16 6 H 0.07 1.73 7.31 -52.48 -0.38 1.35 16 7 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 8 N -0.89 -26.25 13.29 55.43 0.74 -25.52 16 9 Si 0.90 20.94 29.54 -169.99 -5.02 15.92 16 10 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 C 0.27 5.57 4.74 -155.00 -0.73 4.83 16 14 N -0.43 -9.10 9.59 -9.86 -0.09 -9.19 16 15 C 0.04 0.69 6.58 -84.79 -0.56 0.13 16 16 C -0.06 -0.96 9.97 -39.49 -0.39 -1.35 16 17 C -0.14 -1.68 9.95 -39.94 -0.40 -2.08 16 18 C -0.10 -1.14 9.95 -39.94 -0.40 -1.54 16 19 C -0.11 -1.48 9.97 -39.49 -0.39 -1.88 16 20 C 0.12 2.19 6.58 -84.79 -0.56 1.63 16 21 N -0.53 -9.42 10.48 -9.86 -0.10 -9.53 16 22 C 0.41 7.41 7.79 -155.00 -1.21 6.21 16 23 N -0.82 -11.69 9.04 31.44 0.28 -11.41 16 24 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 26 H 0.04 0.60 7.84 -51.93 -0.41 0.19 16 27 H 0.10 1.96 6.58 -51.93 -0.34 1.61 16 28 H 0.04 0.73 7.66 -51.93 -0.40 0.33 16 29 H 0.03 0.77 8.06 -51.93 -0.42 0.35 16 30 H 0.01 0.33 8.03 -51.92 -0.42 -0.08 16 31 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 32 H 0.13 1.93 8.06 -52.48 -0.42 1.51 16 33 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 35 H 0.13 1.57 8.06 -52.48 -0.42 1.15 16 36 H 0.40 4.61 8.95 -40.82 -0.37 4.24 16 37 H 0.42 6.06 8.09 -40.82 -0.33 5.73 16 LS Contribution 315.24 15.07 4.75 4.75 Total: -1.00 -31.09 315.24 -9.49 -40.58 By element: Atomic # 1 Polarization: 12.07 SS G_CDS: -4.73 Total: 7.33 kcal Atomic # 6 Polarization: 2.58 SS G_CDS: -4.69 Total: -2.12 kcal Atomic # 7 Polarization: -66.67 SS G_CDS: 0.20 Total: -66.46 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -5.02 Total: 15.92 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -31.09 -9.49 -40.58 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230655831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.033 kcal (2) G-P(sol) polarization free energy of solvation -31.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.495 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.581 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.453 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds