Wall clock time and date at job start Mon Mar 30 2020 05:36:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46903 * 109.47036 * 2 1 4 4 C 1.46891 * 111.00197 * 199.79385 * 3 2 1 5 5 C 1.50702 * 109.47282 * 66.04367 * 4 3 2 6 6 H 1.08008 * 119.99551 * 0.02562 * 5 4 3 7 7 C 1.37874 * 120.00456 * 180.02562 * 5 4 3 8 8 N 1.31519 * 119.99888 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 120.00138 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47284 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46949 * 120.00195 * 9 7 5 12 12 H 1.48498 * 109.47134 * 240.00147 * 9 7 5 13 13 C 1.38691 * 111.00024 * 75.83563 * 3 2 1 14 14 N 1.31686 * 119.79425 * 68.00802 * 13 3 2 15 15 C 1.34112 * 119.79257 * 179.97438 * 14 13 3 16 16 C 1.40409 * 120.85640 * 180.02562 * 15 14 13 17 17 C 1.36214 * 119.76348 * 180.02562 * 16 15 14 18 18 C 1.39238 * 120.89646 * 0.02562 * 17 16 15 19 19 C 1.36210 * 120.90005 * 359.97365 * 18 17 16 20 20 C 1.40411 * 119.76545 * 0.02562 * 19 18 17 21 21 N 1.34110 * 120.86681 * 180.02562 * 20 19 18 22 22 C 1.31680 * 119.79413 * 179.97438 * 21 20 19 23 23 N 1.38691 * 119.79851 * 179.97438 * 22 21 20 24 24 H 1.09000 * 109.46969 * 54.86240 * 1 2 3 25 25 H 1.08996 * 109.46690 * 174.86141 * 1 2 3 26 26 H 1.08998 * 109.47105 * 294.85990 * 1 2 3 27 27 H 1.08999 * 109.47210 * 240.00065 * 2 1 3 28 28 H 1.09000 * 109.47244 * 119.99573 * 2 1 3 29 29 H 1.09003 * 109.47657 * 186.04336 * 4 3 2 30 30 H 1.09007 * 109.47260 * 306.04853 * 4 3 2 31 31 H 0.96994 * 119.99896 * 179.97438 * 8 7 5 32 32 H 1.08008 * 120.11967 * 0.02562 * 16 15 14 33 33 H 1.07997 * 119.55207 * 180.27824 * 17 16 15 34 34 H 1.07999 * 119.54723 * 179.97438 * 18 17 16 35 35 H 1.08003 * 120.11713 * 180.02562 * 19 18 17 36 36 H 0.96995 * 119.99854 * 354.91363 * 23 22 21 37 37 H 0.97001 * 120.00377 * 174.90825 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4117 1.4513 -0.4644 5 6 3.4771 1.0479 -1.9149 6 1 2.5747 0.7704 -2.4395 7 6 4.6889 1.0329 -2.5724 8 7 5.7879 1.3703 -1.9336 9 14 4.7698 0.5336 -4.3706 10 1 3.4053 0.2033 -4.8545 11 1 5.3203 1.6562 -5.1718 12 1 5.6481 -0.6551 -4.5152 13 6 1.8867 1.9592 1.2554 14 7 2.6240 1.5235 2.2557 15 6 2.4957 2.0791 3.4696 16 6 3.2709 1.6324 4.5517 17 6 3.1220 2.2123 5.7751 18 6 2.2089 3.2452 5.9704 19 6 1.4408 3.7034 4.9431 20 6 1.5675 3.1291 3.6681 21 7 0.8227 3.5634 2.6408 22 6 0.9591 3.0100 1.4538 23 7 0.1886 3.4586 0.3915 24 1 -0.3633 0.5915 -0.8404 25 1 -0.3632 -1.0235 -0.0920 26 1 -0.3633 0.4320 0.9324 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 3.7838 2.4698 -0.3534 30 1 4.0255 0.7736 0.1292 31 1 6.6404 1.3594 -2.3960 32 1 3.9827 0.8317 4.4144 33 1 3.7232 1.8691 6.6040 34 1 2.1084 3.6891 6.9498 35 1 0.7368 4.5055 5.1087 36 1 -0.4996 4.1260 0.5394 37 1 0.3379 3.1052 -0.4994 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230655831.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:36:36 Heat of formation + Delta-G solvation = 56.216530 kcal Electronic energy + Delta-G solvation = -20677.818726 eV Core-core repulsion = 17647.272486 eV Total energy + Delta-G solvation = -3030.546240 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.38697 -39.55997 -37.77475 -35.99519 -34.87546 -34.19851 -31.95624 -31.03186 -30.17368 -28.44297 -25.69866 -24.46392 -24.36699 -23.14700 -22.25804 -19.76725 -19.43200 -18.59193 -17.75942 -17.12513 -16.82587 -16.53410 -16.23279 -15.94678 -15.40187 -15.34061 -14.87314 -14.83799 -14.31847 -14.11516 -13.41850 -12.99719 -12.92065 -12.90163 -12.75192 -12.59473 -12.54411 -12.49958 -12.29903 -11.92652 -11.89973 -11.41661 -11.10640 -10.67020 -10.28259 -9.54648 -9.44842 -8.73831 -8.21833 -6.33963 -0.65647 -0.18541 1.03164 1.43809 1.43991 1.58034 1.93568 2.35101 2.41901 2.75610 3.11061 3.11981 3.34344 3.41295 3.67757 4.04847 4.14869 4.19918 4.31977 4.44647 4.48523 4.63331 4.73661 4.91939 4.99935 5.02970 5.11919 5.17498 5.25034 5.31151 5.35999 5.47110 5.62359 5.83840 5.93225 6.01465 6.06021 6.39217 6.54877 6.66710 6.81946 7.13639 7.36054 8.90273 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.023109 B = 0.005243 C = 0.004776 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1211.353238 B = 5338.887490 C = 5861.476413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.059 3.941 3 N -0.474 5.474 4 C 0.226 3.774 5 C -0.520 4.520 6 H 0.079 0.921 7 C 0.001 3.999 8 N -0.938 5.938 9 Si 0.976 3.024 10 H -0.253 1.253 11 H -0.281 1.281 12 H -0.282 1.282 13 C 0.239 3.761 14 N -0.464 5.464 15 C 0.004 3.996 16 C -0.089 4.089 17 C -0.114 4.114 18 C -0.074 4.074 19 C -0.116 4.116 20 C 0.106 3.894 21 N -0.526 5.526 22 C 0.402 3.598 23 N -0.801 5.801 24 H 0.074 0.926 25 H 0.078 0.922 26 H 0.034 0.966 27 H 0.083 0.917 28 H 0.018 0.982 29 H -0.013 1.013 30 H -0.031 1.031 31 H 0.264 0.736 32 H 0.127 0.873 33 H 0.167 0.833 34 H 0.176 0.824 35 H 0.152 0.848 36 H 0.415 0.585 37 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.355 2.428 11.999 16.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.068 4.068 3 N -0.198 5.198 4 C 0.100 3.900 5 C -0.559 4.559 6 H 0.097 0.903 7 C -0.197 4.197 8 N -0.578 5.578 9 Si 0.800 3.200 10 H -0.177 1.177 11 H -0.207 1.207 12 H -0.208 1.208 13 C -0.016 4.016 14 N -0.180 5.180 15 C -0.121 4.121 16 C -0.109 4.109 17 C -0.134 4.134 18 C -0.093 4.093 19 C -0.136 4.136 20 C -0.018 4.018 21 N -0.254 5.254 22 C 0.144 3.856 23 N -0.348 5.348 24 H 0.093 0.907 25 H 0.097 0.903 26 H 0.053 0.947 27 H 0.101 0.899 28 H 0.037 0.963 29 H 0.005 0.995 30 H -0.013 1.013 31 H 0.073 0.927 32 H 0.145 0.855 33 H 0.184 0.816 34 H 0.193 0.807 35 H 0.170 0.830 36 H 0.246 0.754 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -11.387 2.685 11.848 16.650 hybrid contribution 1.124 -0.562 -0.845 1.515 sum -10.262 2.123 11.002 15.195 Atomic orbital electron populations 1.21676 0.92769 1.02740 1.01440 1.22142 0.96937 0.86812 1.00872 1.60232 1.23917 1.19737 1.15944 1.19273 0.81697 0.93856 0.95144 1.21454 0.94147 1.45060 0.95200 0.90266 1.25999 0.94997 0.95144 1.03592 1.70147 0.99278 1.49483 1.38884 0.85227 0.78885 0.77570 0.78281 1.17688 1.20712 1.20794 1.21061 0.94357 0.95546 0.90622 1.68735 1.21559 1.27329 1.00346 1.19768 1.01124 0.98713 0.92455 1.20959 0.97948 1.00193 0.91777 1.21264 0.99150 0.96390 0.96589 1.21406 0.93012 0.94838 1.00073 1.20943 1.01996 1.01405 0.89235 1.19669 0.93084 0.94229 0.94773 1.68292 1.28618 1.30101 0.98406 1.19250 0.89030 0.88452 0.88912 1.42057 1.38186 1.46626 1.07899 0.90716 0.90296 0.94698 0.89859 0.96320 0.99450 1.01275 0.92731 0.85482 0.81558 0.80672 0.83035 0.75354 0.74185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 9.96 71.98 0.72 -3.13 16 2 C 0.06 2.35 5.50 86.30 0.47 2.82 16 3 N -0.47 -20.93 3.56 -704.59 -2.51 -23.44 16 4 C 0.23 12.47 4.40 85.56 0.38 12.85 16 5 C -0.52 -28.78 8.23 25.60 0.21 -28.57 16 6 H 0.08 4.11 7.31 -2.91 -0.02 4.08 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.94 -57.40 13.29 21.45 0.28 -57.12 16 9 Si 0.98 43.41 29.54 68.60 2.03 45.44 16 10 H -0.25 -10.46 7.11 99.48 0.71 -9.75 16 11 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 12 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 13 C 0.24 10.28 4.74 133.98 0.63 10.92 16 14 N -0.46 -20.83 9.59 -185.11 -1.77 -22.60 16 15 C 0.00 0.15 6.58 40.14 0.26 0.41 16 16 C -0.09 -2.77 9.97 22.33 0.22 -2.55 16 17 C -0.11 -2.43 9.95 22.04 0.22 -2.21 16 18 C -0.07 -1.40 9.95 22.04 0.22 -1.18 16 19 C -0.12 -2.93 9.97 22.33 0.22 -2.70 16 20 C 0.11 3.71 6.58 40.14 0.26 3.97 16 21 N -0.53 -18.90 10.48 -185.11 -1.94 -20.84 16 22 C 0.40 14.88 7.79 133.98 1.04 15.92 16 23 N -0.80 -22.95 9.04 -54.46 -0.49 -23.44 16 24 H 0.07 2.05 8.14 -2.39 -0.02 2.04 16 25 H 0.08 1.98 8.14 -2.39 -0.02 1.96 16 26 H 0.03 1.06 7.84 -2.39 -0.02 1.05 16 27 H 0.08 3.48 6.58 -2.39 -0.02 3.47 16 28 H 0.02 0.79 7.66 -2.39 -0.02 0.77 16 29 H -0.01 -0.78 8.06 -2.39 -0.02 -0.80 16 30 H -0.03 -1.91 8.03 -2.38 -0.02 -1.93 16 31 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 32 H 0.13 3.91 8.06 -2.91 -0.02 3.88 16 33 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 34 H 0.18 1.70 8.06 -2.91 -0.02 1.68 16 35 H 0.15 3.14 8.06 -2.91 -0.02 3.12 16 36 H 0.41 9.25 8.95 -92.71 -0.83 8.42 16 37 H 0.42 12.17 8.09 -92.71 -0.75 11.42 16 Total: -1.00 -72.72 315.24 0.45 -72.27 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: -0.48 Total: 22.70 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 5.33 Total: 7.04 kcal Atomic # 7 Polarization: -141.01 SS G_CDS: -6.43 Total: -147.44 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -72.72 0.45 -72.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230655831.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.486 kcal (2) G-P(sol) polarization free energy of solvation -72.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.269 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds