Wall clock time and date at job start Mon Mar 30 2020 05:31:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47238 * 2 1 4 4 C 1.50701 * 109.47410 * 120.00450 * 2 1 3 5 5 H 1.08001 * 120.00420 * 119.99484 * 4 2 1 6 6 C 1.37878 * 119.99816 * 299.99992 * 4 2 1 7 7 N 1.31517 * 119.99933 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47144 * 60.00101 * 8 6 4 10 10 H 1.48499 * 109.47269 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47118 * 299.99803 * 8 6 4 12 12 N 1.46902 * 109.46862 * 240.00214 * 2 1 3 13 13 C 1.46897 * 110.99975 * 180.38255 * 12 2 1 14 14 C 1.38684 * 111.00311 * 56.42952 * 12 2 1 15 15 N 1.31684 * 119.79595 * 60.28679 * 14 12 2 16 16 C 1.34116 * 119.79334 * 179.97438 * 15 14 12 17 17 C 1.40409 * 120.86291 * 179.97438 * 16 15 14 18 18 C 1.36216 * 119.76117 * 180.02562 * 17 16 15 19 19 C 1.39233 * 120.89877 * 359.96688 * 18 17 16 20 20 C 1.36213 * 120.90476 * 0.02744 * 19 18 17 21 21 C 1.40412 * 119.75837 * 0.02562 * 20 19 18 22 22 N 1.34113 * 120.86171 * 179.97438 * 21 20 19 23 23 C 1.31677 * 119.79724 * 179.97438 * 22 21 20 24 24 N 1.38688 * 119.80064 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.46637 * 304.20798 * 1 2 3 26 26 H 1.08997 * 109.47049 * 64.21220 * 1 2 3 27 27 H 1.08998 * 109.46947 * 184.21346 * 1 2 3 28 28 H 0.96999 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47464 * 301.64552 * 13 12 2 30 30 H 1.09007 * 109.47552 * 61.64229 * 13 12 2 31 31 H 1.09001 * 109.47300 * 181.64473 * 13 12 2 32 32 H 1.08001 * 120.11701 * 0.03790 * 17 16 15 33 33 H 1.07996 * 119.55052 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.54886 * 179.74429 * 19 18 17 35 35 H 1.08001 * 120.12285 * 180.02562 * 20 19 18 36 36 H 0.96999 * 119.99710 * 354.49338 * 24 23 22 37 37 H 0.96998 * 120.00043 * 174.48502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8065 -1.1211 4.0081 10 1 1.8271 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0196 -0.6925 -1.1995 13 6 3.4880 -0.7200 -1.2289 14 6 1.5103 -0.1118 -2.3514 15 7 1.7676 1.1523 -2.6157 16 6 1.2754 1.7136 -3.7299 17 6 1.5353 3.0596 -4.0336 18 6 1.0237 3.6071 -5.1712 19 6 0.2445 2.8495 -6.0415 20 6 -0.0274 1.5410 -5.7783 21 6 0.4825 0.9437 -4.6143 22 7 0.2281 -0.3427 -4.3331 23 6 0.7173 -0.8818 -3.2358 24 7 0.4539 -2.2119 -2.9447 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9253 27 1 -0.3633 -1.0249 0.0755 28 1 0.7090 1.1612 3.4844 29 1 3.8712 0.3001 -1.2045 30 1 3.8587 -1.2681 -0.3626 31 1 3.8240 -1.2125 -2.1414 32 1 2.1387 3.6586 -3.3677 33 1 1.2253 4.6428 -5.4012 34 1 -0.1536 3.3068 -6.9353 35 1 -0.6329 0.9649 -6.4623 36 1 -0.1534 -2.7199 -3.5051 37 1 0.8771 -2.6342 -2.1809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000230659163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:13 Heat of formation + Delta-G solvation = 84.486894 kcal Electronic energy + Delta-G solvation = -20907.194180 eV Core-core repulsion = 17877.873835 eV Total energy + Delta-G solvation = -3029.320345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.03218 -38.18508 -36.38563 -34.63212 -33.30975 -32.51210 -29.93530 -29.30454 -28.77869 -26.00388 -24.64640 -23.53717 -22.83946 -21.93334 -20.20935 -18.41048 -18.12014 -16.61044 -16.16166 -15.62996 -15.43795 -15.16904 -14.54080 -14.45558 -14.13974 -13.68346 -13.63740 -13.12580 -12.33627 -12.16920 -11.94283 -11.75129 -11.55769 -11.16455 -11.10868 -11.06160 -10.88110 -10.79563 -10.29539 -10.25530 -10.06054 -9.90634 -9.24193 -8.72258 -8.52931 -8.24014 -7.68874 -7.46731 -6.07263 -4.13246 0.64780 1.09372 2.34721 3.14730 3.28569 3.33753 3.35227 3.66935 4.20399 4.41846 4.43193 4.66102 4.78041 4.90593 5.10261 5.24571 5.34460 5.57842 5.61906 5.77028 6.02905 6.15956 6.29467 6.33486 6.50385 6.56844 6.62225 6.72817 6.89773 6.95212 6.98841 7.29396 7.39718 7.58646 7.65567 7.73236 7.93193 8.04305 8.17269 8.40301 8.45813 8.90707 9.51487 10.99878 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.005244 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.117047 B = 5337.709969 C = 5752.692962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.221 3.779 3 H 0.020 0.980 4 C -0.510 4.510 5 H 0.065 0.935 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.900 3.100 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 N -0.491 5.491 13 C 0.044 3.956 14 C 0.280 3.720 15 N -0.435 5.435 16 C 0.037 3.963 17 C -0.062 4.062 18 C -0.137 4.137 19 C -0.098 4.098 20 C -0.106 4.106 21 C 0.123 3.877 22 N -0.527 5.527 23 C 0.410 3.590 24 N -0.817 5.817 25 H 0.087 0.913 26 H -0.002 1.002 27 H 0.035 0.965 28 H 0.262 0.738 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.042 0.958 32 H 0.131 0.869 33 H 0.126 0.874 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.400 0.600 37 H 0.423 0.577 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.216 -0.077 -13.621 13.623 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.116 3.884 3 H 0.037 0.963 4 C -0.548 4.548 5 H 0.083 0.917 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.728 3.272 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.202 1.202 12 N -0.217 5.217 13 C -0.103 4.103 14 C 0.024 3.976 15 N -0.150 5.150 16 C -0.087 4.087 17 C -0.081 4.081 18 C -0.157 4.157 19 C -0.118 4.118 20 C -0.126 4.126 21 C 0.000 4.000 22 N -0.254 5.254 23 C 0.152 3.848 24 N -0.362 5.362 25 H 0.106 0.894 26 H 0.017 0.983 27 H 0.054 0.946 28 H 0.072 0.928 29 H 0.051 0.949 30 H 0.104 0.896 31 H 0.061 0.939 32 H 0.149 0.851 33 H 0.144 0.856 34 H 0.144 0.856 35 H 0.148 0.852 36 H 0.229 0.771 37 H 0.257 0.743 Dipole moment (debyes) X Y Z Total from point charges -0.451 -0.205 -13.541 13.551 hybrid contribution 0.364 0.029 1.002 1.067 sum -0.086 -0.176 -12.540 12.541 Atomic orbital electron populations 1.21803 0.97675 1.00102 0.99099 1.19408 0.92123 0.92960 0.83874 0.96272 1.21014 1.31789 1.12612 0.89415 0.91667 1.24921 0.95056 0.95000 0.99038 1.69899 1.36431 1.22756 1.23731 0.86534 0.79104 0.79643 0.81945 1.20246 1.21358 1.20189 1.60398 1.09213 1.51748 1.00308 1.22208 0.86085 1.00763 1.01272 1.20942 0.95307 0.87756 0.93602 1.68901 1.19102 1.11055 1.15960 1.19317 1.00451 0.95926 0.92986 1.20759 0.98248 0.92504 0.96637 1.20744 0.99737 1.00189 0.95046 1.20815 0.97840 0.93775 0.99348 1.20582 1.01090 0.95016 0.95907 1.19144 0.95909 0.89358 0.95589 1.68199 1.27714 1.11622 1.17843 1.19312 0.89462 0.87326 0.88706 1.42147 1.51557 1.07807 1.34728 0.89434 0.98306 0.94551 0.92771 0.94867 0.89591 0.93880 0.85084 0.85642 0.85646 0.85223 0.77074 0.74305 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.20 8.80 37.16 0.33 -2.87 16 2 C 0.22 5.50 1.89 -68.86 -0.13 5.37 16 3 H 0.02 0.56 7.94 -51.93 -0.41 0.14 16 4 C -0.51 -13.33 7.95 -34.44 -0.27 -13.60 16 5 H 0.07 1.65 6.65 -52.49 -0.35 1.30 16 6 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 7 N -0.89 -25.04 11.37 55.43 0.63 -24.41 16 8 Si 0.90 20.65 29.54 -169.99 -5.02 15.63 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 12 N -0.49 -10.32 3.76 -174.26 -0.66 -10.98 16 13 C 0.04 0.85 9.08 60.06 0.55 1.40 16 14 C 0.28 5.72 3.71 -155.00 -0.57 5.14 16 15 N -0.43 -9.15 9.76 -9.86 -0.10 -9.24 16 16 C 0.04 0.70 6.58 -84.79 -0.56 0.14 16 17 C -0.06 -0.97 9.97 -39.49 -0.39 -1.36 16 18 C -0.14 -1.70 9.95 -39.94 -0.40 -2.10 16 19 C -0.10 -1.16 9.95 -39.94 -0.40 -1.56 16 20 C -0.11 -1.50 9.97 -39.49 -0.39 -1.89 16 21 C 0.12 2.19 6.58 -84.79 -0.56 1.63 16 22 N -0.53 -9.56 10.48 -9.86 -0.10 -9.66 16 23 C 0.41 7.51 7.79 -155.01 -1.21 6.31 16 24 N -0.82 -11.94 9.04 31.44 0.28 -11.66 16 25 H 0.09 2.38 6.19 -51.93 -0.32 2.06 16 26 H 0.00 -0.05 6.98 -51.93 -0.36 -0.41 16 27 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 28 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 29 H 0.03 0.67 8.05 -51.93 -0.42 0.25 16 30 H 0.09 1.65 6.50 -51.93 -0.34 1.31 16 31 H 0.04 0.72 8.11 -51.93 -0.42 0.30 16 32 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 33 H 0.13 1.17 8.06 -52.49 -0.42 0.74 16 34 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 35 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 36 H 0.40 4.76 8.95 -40.82 -0.37 4.40 16 37 H 0.42 6.09 8.10 -40.82 -0.33 5.76 16 LS Contribution 308.95 15.07 4.66 4.66 Total: -1.00 -30.11 308.95 -8.98 -39.09 By element: Atomic # 1 Polarization: 12.96 SS G_CDS: -4.57 Total: 8.39 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -4.11 Total: -1.82 kcal Atomic # 7 Polarization: -66.01 SS G_CDS: 0.06 Total: -65.95 kcal Atomic # 14 Polarization: 20.65 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -30.11 -8.98 -39.09 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230659163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.577 kcal (2) G-P(sol) polarization free energy of solvation -30.112 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.465 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds