Wall clock time and date at job start Mon Mar 30 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08999 * 109.47238 * 2 1 4 4 C 1.50701 * 109.47410 * 120.00450 * 2 1 3 5 5 H 1.08001 * 120.00420 * 119.99484 * 4 2 1 6 6 C 1.37878 * 119.99816 * 299.99992 * 4 2 1 7 7 N 1.31517 * 119.99933 * 359.97438 * 6 4 2 8 8 Si 1.86796 * 120.00217 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47144 * 60.00101 * 8 6 4 10 10 H 1.48499 * 109.47269 * 179.97438 * 8 6 4 11 11 H 1.48499 * 109.47118 * 299.99803 * 8 6 4 12 12 N 1.46902 * 109.46862 * 240.00214 * 2 1 3 13 13 C 1.46897 * 110.99975 * 180.38255 * 12 2 1 14 14 C 1.38684 * 111.00311 * 56.42952 * 12 2 1 15 15 N 1.31684 * 119.79595 * 60.28679 * 14 12 2 16 16 C 1.34116 * 119.79334 * 179.97438 * 15 14 12 17 17 C 1.40409 * 120.86291 * 179.97438 * 16 15 14 18 18 C 1.36216 * 119.76117 * 180.02562 * 17 16 15 19 19 C 1.39233 * 120.89877 * 359.96688 * 18 17 16 20 20 C 1.36213 * 120.90476 * 0.02744 * 19 18 17 21 21 C 1.40412 * 119.75837 * 0.02562 * 20 19 18 22 22 N 1.34113 * 120.86171 * 179.97438 * 21 20 19 23 23 C 1.31677 * 119.79724 * 179.97438 * 22 21 20 24 24 N 1.38688 * 119.80064 * 179.97438 * 23 22 21 25 25 H 1.09003 * 109.46637 * 304.20798 * 1 2 3 26 26 H 1.08997 * 109.47049 * 64.21220 * 1 2 3 27 27 H 1.08998 * 109.46947 * 184.21346 * 1 2 3 28 28 H 0.96999 * 120.00104 * 179.97438 * 7 6 4 29 29 H 1.08999 * 109.47464 * 301.64552 * 13 12 2 30 30 H 1.09007 * 109.47552 * 61.64229 * 13 12 2 31 31 H 1.09001 * 109.47300 * 181.64473 * 13 12 2 32 32 H 1.08001 * 120.11701 * 0.03790 * 17 16 15 33 33 H 1.07996 * 119.55052 * 179.97438 * 18 17 16 34 34 H 1.08001 * 119.54886 * 179.74429 * 19 18 17 35 35 H 1.08001 * 120.12285 * 180.02562 * 20 19 18 36 36 H 0.96999 * 119.99710 * 354.49338 * 24 23 22 37 37 H 0.96998 * 120.00043 * 174.48502 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5886 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9436 0.8301 2.6034 8 14 2.3214 -1.1205 4.0079 9 1 3.8065 -1.1211 4.0081 10 1 1.8271 -0.4201 5.2204 11 1 1.8259 -2.5204 4.0076 12 7 2.0196 -0.6925 -1.1995 13 6 3.4880 -0.7200 -1.2289 14 6 1.5103 -0.1118 -2.3514 15 7 1.7676 1.1523 -2.6157 16 6 1.2754 1.7136 -3.7299 17 6 1.5353 3.0596 -4.0336 18 6 1.0237 3.6071 -5.1712 19 6 0.2445 2.8495 -6.0415 20 6 -0.0274 1.5410 -5.7783 21 6 0.4825 0.9437 -4.6143 22 7 0.2281 -0.3427 -4.3331 23 6 0.7173 -0.8818 -3.2358 24 7 0.4539 -2.2119 -2.9447 25 1 -0.3633 0.5778 0.8499 26 1 -0.3633 0.4471 -0.9253 27 1 -0.3633 -1.0249 0.0755 28 1 0.7090 1.1612 3.4844 29 1 3.8712 0.3001 -1.2045 30 1 3.8587 -1.2681 -0.3626 31 1 3.8240 -1.2125 -2.1414 32 1 2.1387 3.6586 -3.3677 33 1 1.2253 4.6428 -5.4012 34 1 -0.1536 3.3068 -6.9353 35 1 -0.6329 0.9649 -6.4623 36 1 -0.1534 -2.7199 -3.5051 37 1 0.8771 -2.6342 -2.1809 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000230659163.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:31:12 Heat of formation + Delta-G solvation = 64.012922 kcal Electronic energy + Delta-G solvation = -20908.081998 eV Core-core repulsion = 17877.873835 eV Total energy + Delta-G solvation = -3030.208163 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -42.37874 -39.57986 -37.82436 -36.00810 -34.95991 -34.05721 -31.46020 -30.92796 -30.06223 -27.73403 -26.45878 -24.99215 -24.26962 -23.12666 -21.97550 -19.75882 -19.38064 -18.37408 -17.75570 -17.17170 -16.79738 -16.46662 -16.16902 -15.83981 -15.37019 -15.33072 -14.92823 -14.80160 -14.09532 -13.74561 -13.38954 -13.03480 -12.96016 -12.78745 -12.68083 -12.54922 -12.48305 -12.46357 -12.20341 -12.15959 -11.90114 -11.15665 -11.08924 -10.56391 -10.23423 -9.46296 -9.43264 -8.71568 -8.12105 -6.25407 -0.62726 -0.16409 1.05535 1.46452 1.48257 1.55648 1.95505 2.38219 2.44616 2.80860 3.13521 3.18350 3.38125 3.45275 3.69945 4.09316 4.17862 4.33903 4.41180 4.51790 4.65592 4.69586 4.79040 4.87650 4.95747 5.05369 5.09054 5.26673 5.31192 5.40710 5.48571 5.61532 5.68887 5.87023 6.02198 6.08372 6.16871 6.41269 6.62196 6.69778 6.86286 7.15602 7.43752 8.94915 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028018 B = 0.005244 C = 0.004866 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 999.117047 B = 5337.709969 C = 5752.692962 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C 0.232 3.768 3 H -0.029 1.029 4 C -0.519 4.519 5 H 0.074 0.926 6 C 0.011 3.989 7 N -0.924 5.924 8 Si 0.967 3.033 9 H -0.270 1.270 10 H -0.290 1.290 11 H -0.266 1.266 12 N -0.480 5.480 13 C 0.049 3.951 14 C 0.247 3.753 15 N -0.462 5.462 16 C 0.005 3.995 17 C -0.089 4.089 18 C -0.115 4.115 19 C -0.075 4.075 20 C -0.116 4.116 21 C 0.105 3.895 22 N -0.528 5.528 23 C 0.400 3.600 24 N -0.802 5.802 25 H 0.060 0.940 26 H -0.005 1.005 27 H 0.042 0.958 28 H 0.262 0.738 29 H 0.012 0.988 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.128 0.872 33 H 0.166 0.834 34 H 0.175 0.825 35 H 0.151 0.849 36 H 0.414 0.586 37 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.518 -0.141 -15.663 15.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.127 3.873 3 H -0.011 1.011 4 C -0.557 4.557 5 H 0.092 0.908 6 C -0.187 4.187 7 N -0.563 5.563 8 Si 0.792 3.208 9 H -0.195 1.195 10 H -0.216 1.216 11 H -0.191 1.191 12 N -0.205 5.205 13 C -0.099 4.099 14 C -0.008 4.008 15 N -0.178 5.178 16 C -0.120 4.120 17 C -0.108 4.108 18 C -0.135 4.135 19 C -0.094 4.094 20 C -0.136 4.136 21 C -0.019 4.019 22 N -0.256 5.256 23 C 0.142 3.858 24 N -0.349 5.349 25 H 0.079 0.921 26 H 0.014 0.986 27 H 0.061 0.939 28 H 0.071 0.929 29 H 0.031 0.969 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.146 0.854 33 H 0.184 0.816 34 H 0.192 0.808 35 H 0.168 0.832 36 H 0.245 0.755 37 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -0.752 -0.313 -15.604 15.625 hybrid contribution 0.435 0.237 1.422 1.506 sum -0.317 -0.076 -14.182 14.186 Atomic orbital electron populations 1.21546 0.97796 0.99708 0.97638 1.19044 0.91876 0.90705 0.85706 1.01128 1.21322 1.31654 1.12717 0.89988 0.90834 1.25778 0.95174 0.95615 1.02175 1.70059 1.37730 1.24305 1.24240 0.85467 0.78732 0.78696 0.77860 1.19475 1.21561 1.19088 1.60267 1.09866 1.50860 0.99471 1.22199 0.85381 0.99780 1.02517 1.20970 0.97382 0.88362 0.94073 1.68765 1.19863 1.11722 1.17460 1.19758 1.01775 0.97440 0.92978 1.20956 0.99821 0.91568 0.98481 1.21255 0.97284 1.01919 0.93022 1.21392 0.95435 0.92581 1.00038 1.20938 1.01400 0.96316 0.94988 1.19661 0.96125 0.89351 0.96729 1.68277 1.27740 1.12060 1.17537 1.19297 0.89550 0.88306 0.88674 1.42045 1.51425 1.06605 1.34792 0.92101 0.98585 0.93935 0.92943 0.96873 0.89617 0.91290 0.85418 0.81613 0.80779 0.83159 0.75457 0.74160 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.62 8.80 71.98 0.63 -4.98 16 2 C 0.23 12.10 1.89 44.17 0.08 12.18 16 3 H -0.03 -1.76 7.94 -2.39 -0.02 -1.78 16 4 C -0.52 -27.64 7.95 25.60 0.20 -27.44 16 5 H 0.07 3.72 6.65 -2.91 -0.02 3.70 16 6 C 0.01 0.62 5.30 84.65 0.45 1.07 16 7 N -0.92 -53.65 11.37 21.45 0.24 -53.41 16 8 Si 0.97 42.59 29.54 68.60 2.03 44.62 16 9 H -0.27 -11.48 7.11 99.48 0.71 -10.78 16 10 H -0.29 -12.76 7.11 99.48 0.71 -12.05 16 11 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 12 N -0.48 -20.81 3.76 -705.24 -2.65 -23.46 16 13 C 0.05 1.92 9.08 127.69 1.16 3.08 16 14 C 0.25 10.43 3.71 133.99 0.50 10.93 16 15 N -0.46 -20.34 9.76 -185.10 -1.81 -22.15 16 16 C 0.00 0.18 6.58 40.14 0.26 0.45 16 17 C -0.09 -2.72 9.97 22.33 0.22 -2.50 16 18 C -0.11 -2.44 9.95 22.04 0.22 -2.22 16 19 C -0.08 -1.43 9.95 22.04 0.22 -1.21 16 20 C -0.12 -2.96 9.97 22.33 0.22 -2.73 16 21 C 0.10 3.65 6.58 40.14 0.26 3.92 16 22 N -0.53 -18.99 10.48 -185.10 -1.94 -20.93 16 23 C 0.40 14.77 7.79 133.99 1.04 15.81 16 24 N -0.80 -23.16 9.04 -54.46 -0.49 -23.65 16 25 H 0.06 3.46 6.19 -2.39 -0.01 3.45 16 26 H 0.00 -0.25 6.98 -2.39 -0.02 -0.27 16 27 H 0.04 2.08 8.14 -2.39 -0.02 2.06 16 28 H 0.26 14.50 8.31 -92.71 -0.77 13.73 16 29 H 0.01 0.55 8.05 -2.39 -0.02 0.53 16 30 H 0.09 3.33 6.50 -2.38 -0.02 3.32 16 31 H 0.07 2.33 8.11 -2.39 -0.02 2.31 16 32 H 0.13 3.86 8.06 -2.91 -0.02 3.83 16 33 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 34 H 0.17 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.15 3.15 8.06 -2.91 -0.02 3.13 16 36 H 0.41 9.48 8.95 -92.71 -0.83 8.65 16 37 H 0.42 12.08 8.10 -92.71 -0.75 11.33 16 Total: -1.00 -68.50 308.95 0.39 -68.10 By element: Atomic # 1 Polarization: 24.99 SS G_CDS: -0.47 Total: 24.53 kcal Atomic # 6 Polarization: 0.87 SS G_CDS: 5.48 Total: 6.36 kcal Atomic # 7 Polarization: -136.96 SS G_CDS: -6.65 Total: -143.61 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 2.03 Total: 44.62 kcal Total: -68.50 0.39 -68.10 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000230659163.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.117 kcal (2) G-P(sol) polarization free energy of solvation -68.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 63.619 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.104 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds