Wall clock time and date at job start Mon Mar 30 2020 05:34:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47288 * 2 1 4 4 C 1.46904 * 111.00146 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47040 * 180.02562 * 4 3 2 6 6 C 1.34975 * 126.61646 * 94.56548 * 5 4 3 7 7 N 1.33378 * 109.01450 * 179.97438 * 6 5 4 8 8 N 1.28761 * 109.93568 * 359.74614 * 7 6 5 9 9 N 1.36347 * 126.61195 * 274.53971 * 5 4 3 10 10 C 1.39733 * 126.86622 * 359.97438 * 9 5 4 11 11 C 1.39369 * 119.82745 * 42.79337 * 10 9 5 12 12 C 1.36422 * 120.17772 * 179.97438 * 11 10 9 13 13 C 1.40838 * 119.82267 * 0.02562 * 12 11 10 14 14 C 1.41185 * 120.17517 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00441 * 330.93867 * 14 13 12 16 16 C 1.39945 * 119.99997 * 150.66027 * 14 13 12 17 17 N 1.30843 * 120.00369 * 349.53838 * 16 14 13 18 18 Si 1.86801 * 120.00153 * 169.53935 * 16 14 13 19 19 H 1.48499 * 109.47098 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47095 * 120.00110 * 18 16 14 21 21 H 1.48505 * 109.47109 * 239.99949 * 18 16 14 22 22 C 1.40844 * 119.64960 * 0.27085 * 13 12 11 23 23 C 1.36426 * 119.81550 * 359.46831 * 22 13 12 24 24 H 1.09007 * 109.47124 * 299.99586 * 1 2 3 25 25 H 1.08998 * 109.47449 * 59.99500 * 1 2 3 26 26 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47124 * 240.00414 * 2 1 3 28 28 H 1.08998 * 109.47449 * 120.00500 * 2 1 3 29 29 H 1.00907 * 110.99703 * 56.05456 * 3 2 1 30 30 H 1.08991 * 109.46755 * 60.00341 * 4 3 2 31 31 H 1.09002 * 109.46851 * 300.00495 * 4 3 2 32 32 H 1.08002 * 125.48563 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.90829 * 0.02801 * 11 10 9 34 34 H 1.08006 * 120.08490 * 179.97438 * 12 11 10 35 35 H 0.96994 * 120.00184 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.08811 * 179.70117 * 22 13 12 37 37 H 1.08007 * 119.90557 * 180.26942 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8578 0.0000 6 6 4.2829 3.5966 1.0803 7 7 4.6444 4.8160 0.6787 8 7 4.5680 4.8964 -0.6041 9 7 4.1200 3.6588 -1.0906 10 6 3.8966 3.3141 -2.4262 11 6 2.7640 2.5793 -2.7723 12 6 2.5386 2.2393 -4.0741 13 6 3.4544 2.6323 -5.0693 14 6 3.2287 2.2840 -6.4188 15 1 2.6833 1.3837 -6.6602 16 6 3.7068 3.1085 -7.4436 17 7 4.1790 4.2957 -7.1617 18 14 3.6707 2.5141 -9.2142 19 1 3.0928 1.1471 -9.2657 20 1 2.8371 3.4345 -10.0285 21 1 5.0532 2.4883 -9.7559 22 6 4.5998 3.3693 -4.7104 23 6 4.8081 3.7060 -3.4049 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6442 1.9012 0.7815 30 1 3.8646 0.9204 -0.8908 31 1 3.8654 0.9200 0.8891 32 1 4.2586 3.2551 2.1046 33 1 2.0625 2.2791 -2.0080 34 1 1.6606 1.6696 -4.3407 35 1 4.5099 4.8673 -7.8720 36 1 5.3092 3.6701 -5.4672 37 1 5.6837 4.2748 -3.1286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000231025346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:40 Heat of formation + Delta-G solvation = 111.935114 kcal Electronic energy + Delta-G solvation = -20253.065616 eV Core-core repulsion = 17224.935516 eV Total energy + Delta-G solvation = -3028.130101 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.50377 -37.86561 -36.68981 -34.44979 -32.86892 -31.79923 -29.76947 -29.24715 -29.02351 -25.69510 -24.95182 -22.33558 -22.14107 -21.75517 -20.34376 -19.78978 -17.57691 -17.19327 -15.86932 -15.59161 -15.42003 -14.68365 -14.52169 -14.26108 -14.09352 -13.46277 -13.26251 -12.92113 -12.65031 -12.22148 -12.09631 -11.99162 -11.73950 -11.66625 -11.39624 -11.27067 -11.17335 -10.92899 -10.76066 -10.42699 -10.22580 -9.97380 -9.54040 -9.23818 -8.71198 -8.42136 -7.81831 -7.39986 -6.98490 -4.62445 1.64644 2.61267 2.87923 2.95445 2.98188 3.00426 3.03860 3.09945 3.75322 4.19801 4.38662 4.79414 5.02886 5.06426 5.19740 5.29409 5.39497 5.40612 5.56083 5.67451 5.73675 5.92258 6.06544 6.11275 6.15698 6.33842 6.58307 6.65659 6.79175 6.85884 6.90463 7.08211 7.14682 7.28086 7.38327 7.70048 7.77845 7.90358 8.01157 8.35423 8.59996 8.67305 8.82310 9.94082 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005164 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.462516 B = 5420.690643 C = 6684.549007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.055 3.945 3 N -0.683 5.683 4 C 0.132 3.868 5 C 0.031 3.969 6 C -0.089 4.089 7 N -0.266 5.266 8 N -0.090 5.090 9 N -0.241 5.241 10 C -0.044 4.044 11 C -0.067 4.067 12 C -0.217 4.217 13 C 0.120 3.880 14 C -0.443 4.443 15 H 0.084 0.916 16 C 0.070 3.930 17 N -0.783 5.783 18 Si 0.916 3.084 19 H -0.259 1.259 20 H -0.272 1.272 21 H -0.270 1.270 22 C -0.157 4.157 23 C -0.069 4.069 24 H 0.051 0.949 25 H 0.066 0.934 26 H 0.059 0.941 27 H 0.076 0.924 28 H 0.029 0.971 29 H 0.343 0.657 30 H 0.093 0.907 31 H 0.056 0.944 32 H 0.172 0.828 33 H 0.132 0.868 34 H 0.103 0.897 35 H 0.286 0.714 36 H 0.127 0.873 37 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.219 -8.337 8.211 12.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.074 4.074 3 N -0.315 5.315 4 C 0.002 3.998 5 C -0.105 4.105 6 C -0.250 4.250 7 N -0.132 5.132 8 N -0.066 5.066 9 N -0.020 5.020 10 C -0.136 4.136 11 C -0.087 4.087 12 C -0.237 4.237 13 C 0.117 3.883 14 C -0.472 4.472 15 H 0.103 0.897 16 C -0.149 4.149 17 N -0.407 5.407 18 Si 0.740 3.260 19 H -0.182 1.182 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.177 4.177 23 C -0.089 4.089 24 H 0.070 0.930 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.095 0.905 28 H 0.047 0.953 29 H 0.161 0.839 30 H 0.111 0.889 31 H 0.074 0.926 32 H 0.189 0.811 33 H 0.149 0.851 34 H 0.121 0.879 35 H 0.097 0.903 36 H 0.145 0.855 37 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.711 -6.557 7.045 9.999 hybrid contribution -0.126 -1.267 0.277 1.303 sum -2.837 -7.824 7.322 11.085 Atomic orbital electron populations 1.21766 0.94826 1.01663 1.02586 1.21930 0.95804 0.88893 1.00753 1.60443 1.06822 1.14026 1.50245 1.20296 0.88054 0.88998 1.02497 1.21723 1.05383 0.95527 0.87875 1.22661 1.11600 0.91356 0.99383 1.74203 1.15138 1.18757 1.05061 1.82096 1.21626 1.00113 1.02790 1.47661 1.40068 1.08274 1.06046 1.17098 1.02652 1.15701 0.78193 1.20763 0.94481 0.96209 0.97289 1.20681 1.00792 1.09972 0.92241 1.17834 0.89174 0.88300 0.93023 1.19768 1.29667 1.07355 0.90363 0.89749 1.26047 0.92542 0.93994 1.02343 1.69794 1.28361 1.06617 1.35878 0.86118 0.79051 0.80191 0.80632 1.18202 1.19692 1.19498 1.20992 0.98974 1.04201 0.93525 1.20306 0.97014 0.98645 0.92961 0.92967 0.91498 0.92200 0.90508 0.95301 0.83862 0.88913 0.92602 0.81051 0.85081 0.87883 0.90333 0.85539 0.88434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 10.17 37.16 0.38 -0.98 16 2 C 0.06 0.55 6.40 -3.83 -0.02 0.52 16 3 N -0.68 -8.30 4.52 -115.06 -0.52 -8.82 16 4 C 0.13 1.75 5.13 -4.98 -0.03 1.72 16 5 C 0.03 0.53 6.33 -81.75 -0.52 0.01 16 6 C -0.09 -1.47 11.78 -18.04 -0.21 -1.69 16 7 N -0.27 -5.39 12.33 30.09 0.37 -5.02 16 8 N -0.09 -2.01 13.68 60.35 0.83 -1.18 16 9 N -0.24 -5.07 3.73 -6.68 -0.02 -5.09 16 10 C -0.04 -0.99 6.21 -83.41 -0.52 -1.51 16 11 C -0.07 -1.43 8.63 -39.82 -0.34 -1.77 16 12 C -0.22 -4.89 9.74 -39.25 -0.38 -5.27 16 13 C 0.12 2.96 5.54 -106.81 -0.59 2.37 16 14 C -0.44 -10.76 9.05 -37.82 -0.34 -11.10 16 15 H 0.08 1.94 7.87 -52.49 -0.41 1.53 16 16 C 0.07 1.64 5.25 -17.33 -0.09 1.54 16 17 N -0.78 -19.05 10.88 55.55 0.60 -18.45 16 18 Si 0.92 17.29 29.57 -169.99 -5.03 12.27 16 19 H -0.26 -4.80 7.11 56.52 0.40 -4.39 16 20 H -0.27 -5.10 7.11 56.52 0.40 -4.70 16 21 H -0.27 -5.03 7.11 56.52 0.40 -4.63 16 22 C -0.16 -3.88 8.60 -39.25 -0.34 -4.22 16 23 C -0.07 -1.63 9.80 -39.81 -0.39 -2.02 16 24 H 0.05 0.43 8.14 -51.92 -0.42 0.01 16 25 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 26 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 27 H 0.08 0.82 8.14 -51.92 -0.42 0.40 16 28 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 29 H 0.34 3.82 8.72 -39.29 -0.34 3.48 16 30 H 0.09 1.36 7.67 -51.93 -0.40 0.96 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.17 2.10 8.06 -52.49 -0.42 1.68 16 33 H 0.13 2.55 5.49 -52.49 -0.29 2.26 16 34 H 0.10 2.15 8.06 -52.48 -0.42 1.73 16 35 H 0.29 6.30 8.30 -40.82 -0.34 5.96 16 36 H 0.13 3.21 6.27 -52.48 -0.33 2.88 16 37 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 LS Contribution 316.00 15.07 4.76 4.76 Total: -1.00 -27.51 316.00 -7.12 -34.63 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -4.71 Total: 9.29 kcal Atomic # 6 Polarization: -18.99 SS G_CDS: -3.40 Total: -22.39 kcal Atomic # 7 Polarization: -39.81 SS G_CDS: 1.26 Total: -38.55 kcal Atomic # 14 Polarization: 17.29 SS G_CDS: -5.03 Total: 12.27 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -27.51 -7.12 -34.63 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231025346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.567 kcal (2) G-P(sol) polarization free energy of solvation -27.513 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 119.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.632 kcal (6) G-S(sol) free energy of system = (1) + (5) 111.935 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds