Wall clock time and date at job start Mon Mar 30 2020 05:34:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46900 * 109.47288 * 2 1 4 4 C 1.46904 * 111.00146 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47040 * 180.02562 * 4 3 2 6 6 C 1.34975 * 126.61646 * 94.56548 * 5 4 3 7 7 N 1.33378 * 109.01450 * 179.97438 * 6 5 4 8 8 N 1.28761 * 109.93568 * 359.74614 * 7 6 5 9 9 N 1.36347 * 126.61195 * 274.53971 * 5 4 3 10 10 C 1.39733 * 126.86622 * 359.97438 * 9 5 4 11 11 C 1.39369 * 119.82745 * 42.79337 * 10 9 5 12 12 C 1.36422 * 120.17772 * 179.97438 * 11 10 9 13 13 C 1.40838 * 119.82267 * 0.02562 * 12 11 10 14 14 C 1.41185 * 120.17517 * 179.97438 * 13 12 11 15 15 H 1.07995 * 120.00441 * 330.93867 * 14 13 12 16 16 C 1.39945 * 119.99997 * 150.66027 * 14 13 12 17 17 N 1.30843 * 120.00369 * 349.53838 * 16 14 13 18 18 Si 1.86801 * 120.00153 * 169.53935 * 16 14 13 19 19 H 1.48499 * 109.47098 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.47095 * 120.00110 * 18 16 14 21 21 H 1.48505 * 109.47109 * 239.99949 * 18 16 14 22 22 C 1.40844 * 119.64960 * 0.27085 * 13 12 11 23 23 C 1.36426 * 119.81550 * 359.46831 * 22 13 12 24 24 H 1.09007 * 109.47124 * 299.99586 * 1 2 3 25 25 H 1.08998 * 109.47449 * 59.99500 * 1 2 3 26 26 H 1.08999 * 109.47196 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47124 * 240.00414 * 2 1 3 28 28 H 1.08998 * 109.47449 * 120.00500 * 2 1 3 29 29 H 1.00907 * 110.99703 * 56.05456 * 3 2 1 30 30 H 1.08991 * 109.46755 * 60.00341 * 4 3 2 31 31 H 1.09002 * 109.46851 * 300.00495 * 4 3 2 32 32 H 1.08002 * 125.48563 * 359.97438 * 6 5 4 33 33 H 1.07997 * 119.90829 * 0.02801 * 11 10 9 34 34 H 1.08006 * 120.08490 * 179.97438 * 12 11 10 35 35 H 0.96994 * 120.00184 * 180.02562 * 17 16 14 36 36 H 1.08005 * 120.08811 * 179.70117 * 22 13 12 37 37 H 1.08007 * 119.90557 * 180.26942 * 23 22 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4882 1.4242 -0.0006 5 6 3.9524 2.8578 0.0000 6 6 4.2829 3.5966 1.0803 7 7 4.6444 4.8160 0.6787 8 7 4.5680 4.8964 -0.6041 9 7 4.1200 3.6588 -1.0906 10 6 3.8966 3.3141 -2.4262 11 6 2.7640 2.5793 -2.7723 12 6 2.5386 2.2393 -4.0741 13 6 3.4544 2.6323 -5.0693 14 6 3.2287 2.2840 -6.4188 15 1 2.6833 1.3837 -6.6602 16 6 3.7068 3.1085 -7.4436 17 7 4.1790 4.2957 -7.1617 18 14 3.6707 2.5141 -9.2142 19 1 3.0928 1.1471 -9.2657 20 1 2.8371 3.4345 -10.0285 21 1 5.0532 2.4883 -9.7559 22 6 4.5998 3.3693 -4.7104 23 6 4.8081 3.7060 -3.4049 24 1 -0.3634 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8933 -0.5139 0.8899 29 1 1.6442 1.9012 0.7815 30 1 3.8646 0.9204 -0.8908 31 1 3.8654 0.9200 0.8891 32 1 4.2586 3.2551 2.1046 33 1 2.0625 2.2791 -2.0080 34 1 1.6606 1.6696 -4.3407 35 1 4.5099 4.8673 -7.8720 36 1 5.3092 3.6701 -5.4672 37 1 5.6837 4.2748 -3.1286 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000231025346.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:34:39 Heat of formation + Delta-G solvation = 95.848647 kcal Electronic energy + Delta-G solvation = -20253.763178 eV Core-core repulsion = 17224.935516 eV Total energy + Delta-G solvation = -3028.827662 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.00105 -39.63598 -37.66456 -36.14058 -34.46562 -33.01620 -31.54404 -30.85810 -30.28861 -27.35558 -26.16256 -23.98299 -23.43833 -22.93326 -21.98851 -21.31754 -19.36271 -18.75049 -17.24312 -16.85658 -16.79353 -15.92719 -15.74568 -15.70269 -15.50225 -15.01709 -14.59492 -14.32405 -14.07448 -13.92806 -13.58710 -13.39668 -12.98086 -12.86383 -12.84414 -12.48848 -12.39253 -12.35983 -12.02321 -11.90955 -11.85845 -11.66498 -11.26813 -10.94797 -10.11139 -9.64647 -9.37210 -9.19652 -8.72483 -6.46888 0.07984 0.95000 1.04685 1.40395 1.46855 1.56070 1.56712 1.63843 2.17683 2.62720 3.23430 3.53726 3.59414 3.90467 4.08845 4.16262 4.27301 4.32829 4.43709 4.50216 4.58724 4.72266 4.85285 4.93315 5.00795 5.02143 5.11308 5.20121 5.22813 5.31720 5.40707 5.45614 5.56974 5.90972 5.95182 5.98566 6.11966 6.24710 6.44386 6.53661 6.78655 6.85916 7.31270 8.23051 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019220 B = 0.005164 C = 0.004188 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1456.462516 B = 5420.690643 C = 6684.549007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.057 3.943 3 N -0.698 5.698 4 C 0.136 3.864 5 C 0.044 3.956 6 C -0.079 4.079 7 N -0.280 5.280 8 N -0.140 5.140 9 N -0.262 5.262 10 C -0.040 4.040 11 C -0.058 4.058 12 C -0.221 4.221 13 C 0.094 3.906 14 C -0.472 4.472 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.820 5.820 18 Si 0.990 3.010 19 H -0.251 1.251 20 H -0.268 1.268 21 H -0.266 1.266 22 C -0.173 4.173 23 C -0.080 4.080 24 H 0.060 0.940 25 H 0.047 0.953 26 H 0.074 0.926 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.351 0.649 30 H 0.077 0.923 31 H 0.096 0.904 32 H 0.221 0.779 33 H 0.154 0.846 34 H 0.119 0.881 35 H 0.292 0.708 36 H 0.110 0.890 37 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.248 -10.225 9.698 14.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.071 4.071 3 N -0.332 5.332 4 C 0.006 3.994 5 C -0.092 4.092 6 C -0.239 4.239 7 N -0.144 5.144 8 N -0.116 5.116 9 N -0.042 5.042 10 C -0.132 4.132 11 C -0.079 4.079 12 C -0.241 4.241 13 C 0.091 3.909 14 C -0.500 4.500 15 H 0.110 0.890 16 C -0.186 4.186 17 N -0.445 5.445 18 Si 0.810 3.190 19 H -0.174 1.174 20 H -0.192 1.192 21 H -0.191 1.191 22 C -0.194 4.194 23 C -0.100 4.100 24 H 0.079 0.921 25 H 0.067 0.933 26 H 0.092 0.908 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.170 0.830 30 H 0.096 0.904 31 H 0.114 0.886 32 H 0.237 0.763 33 H 0.171 0.829 34 H 0.137 0.863 35 H 0.103 0.897 36 H 0.128 0.872 37 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.743 -8.438 8.551 12.583 hybrid contribution 0.189 -0.702 0.082 0.732 sum -3.554 -9.141 8.632 13.065 Atomic orbital electron populations 1.21744 0.94219 1.02491 1.02080 1.21953 0.96198 0.87627 1.01313 1.60341 1.06014 1.15707 1.51097 1.20394 0.89017 0.86353 1.03677 1.22554 1.03227 0.96803 0.86651 1.23467 1.09412 0.89729 1.01338 1.74180 1.15211 1.20583 1.04434 1.82110 1.24118 1.01501 1.03869 1.47684 1.41388 1.08976 1.06156 1.17147 1.02276 1.14781 0.79041 1.20937 0.94216 0.95378 0.97340 1.20894 1.00889 1.09952 0.92379 1.18145 0.89633 0.88973 0.94129 1.20046 1.31019 1.08134 0.90802 0.89048 1.26932 0.91506 0.93655 1.06465 1.69862 1.29294 1.07835 1.37505 0.85022 0.79117 0.79826 0.75005 1.17392 1.19245 1.19058 1.20897 0.99328 1.05515 0.93612 1.20349 0.97484 0.99015 0.93194 0.92098 0.93348 0.90750 0.91530 0.93049 0.82951 0.90438 0.88618 0.76271 0.82906 0.86312 0.89728 0.87176 0.88940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.26 10.17 71.98 0.73 -1.53 16 2 C 0.06 0.95 6.40 86.30 0.55 1.51 16 3 N -0.70 -14.74 4.52 -517.93 -2.34 -17.08 16 4 C 0.14 3.16 5.13 85.56 0.44 3.60 16 5 C 0.04 1.38 6.33 41.11 0.26 1.64 16 6 C -0.08 -2.35 11.78 83.71 0.99 -1.36 16 7 N -0.28 -10.95 12.33 -58.71 -0.72 -11.68 16 8 N -0.14 -6.31 13.68 37.02 0.51 -5.80 16 9 N -0.26 -10.88 3.73 -175.04 -0.65 -11.53 16 10 C -0.04 -1.82 6.21 38.43 0.24 -1.58 16 11 C -0.06 -2.47 8.63 22.12 0.19 -2.28 16 12 C -0.22 -10.03 9.74 22.48 0.22 -9.81 16 13 C 0.09 4.80 5.54 -21.28 -0.12 4.68 16 14 C -0.47 -23.38 9.05 23.41 0.21 -23.16 16 15 H 0.09 4.24 7.87 -2.91 -0.02 4.21 16 16 C 0.03 1.44 5.25 85.25 0.45 1.89 16 17 N -0.82 -41.26 10.88 21.83 0.24 -41.02 16 18 Si 0.99 35.50 29.57 68.60 2.03 37.53 16 19 H -0.25 -8.58 7.11 99.48 0.71 -7.88 16 20 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 21 H -0.27 -9.27 7.11 99.48 0.71 -8.56 16 22 C -0.17 -8.98 8.60 22.48 0.19 -8.79 16 23 C -0.08 -3.94 9.80 22.12 0.22 -3.73 16 24 H 0.06 0.82 8.14 -2.38 -0.02 0.81 16 25 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 26 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 28 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.35 6.52 8.72 -89.69 -0.78 5.74 16 30 H 0.08 2.10 7.67 -2.39 -0.02 2.08 16 31 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 32 H 0.22 4.21 8.06 -2.91 -0.02 4.19 16 33 H 0.15 5.71 5.49 -2.91 -0.02 5.70 16 34 H 0.12 4.90 8.06 -2.91 -0.02 4.88 16 35 H 0.29 13.27 8.30 -92.71 -0.77 12.50 16 36 H 0.11 5.96 6.27 -2.91 -0.02 5.94 16 37 H 0.09 4.51 8.06 -2.91 -0.02 4.49 16 Total: -1.00 -61.82 316.00 3.94 -57.89 By element: Atomic # 1 Polarization: 30.33 SS G_CDS: 0.31 Total: 30.63 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 4.57 Total: -38.93 kcal Atomic # 7 Polarization: -84.15 SS G_CDS: -2.97 Total: -87.12 kcal Atomic # 14 Polarization: 35.50 SS G_CDS: 2.03 Total: 37.53 kcal Total: -61.82 3.94 -57.89 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000231025346.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 153.738 kcal (2) G-P(sol) polarization free energy of solvation -61.824 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.889 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.849 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds