Wall clock time and date at job start Mon Mar 30 2020 05:43:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 S 1.81401 * 109.46840 * 2 1 4 4 C 1.81403 * 103.00006 * 179.97438 * 3 2 1 5 5 H 1.09003 * 110.05375 * 306.42013 * 4 3 2 6 6 C 1.53880 * 110.03325 * 67.82855 * 4 3 2 7 7 C 1.54271 * 106.59454 * 119.28597 * 6 4 3 8 8 C 1.54885 * 104.19544 * 23.61111 * 7 6 4 9 9 H 1.09008 * 110.91150 * 80.44589 * 8 7 6 10 10 N 1.46905 * 110.75532 * 203.73966 * 8 7 6 11 11 C 1.46902 * 110.99800 * 268.33016 * 10 8 7 12 12 C 1.50706 * 109.46577 * 180.02562 * 11 10 8 13 13 O 1.21288 * 120.00224 * 359.72334 * 12 11 10 14 14 N 1.34777 * 119.99766 * 179.97438 * 12 11 10 15 15 C 1.37095 * 119.99970 * 179.97438 * 14 12 11 16 16 H 1.07999 * 119.99992 * 0.02562 * 15 14 12 17 17 C 1.38956 * 120.00025 * 180.02562 * 15 14 12 18 18 N 1.31411 * 119.99899 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00157 * 180.02562 * 17 15 14 20 20 H 1.48503 * 109.47086 * 59.99766 * 19 17 15 21 21 H 1.48494 * 109.47285 * 180.02562 * 19 17 15 22 22 H 1.48505 * 109.46819 * 300.00061 * 19 17 15 23 23 C 1.54263 * 110.03499 * 185.00220 * 4 3 2 24 24 H 1.09001 * 109.47222 * 300.00227 * 1 2 3 25 25 H 1.09003 * 109.46726 * 60.00264 * 1 2 3 26 26 H 1.09000 * 109.47005 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47400 * 240.00296 * 2 1 3 28 28 H 1.08997 * 109.46996 * 119.99383 * 2 1 3 29 29 H 1.08992 * 110.03550 * 238.57280 * 6 4 3 30 30 H 1.08997 * 110.02848 * 359.96024 * 6 4 3 31 31 H 1.09000 * 110.48221 * 264.93433 * 7 6 4 32 32 H 1.08999 * 110.48136 * 142.29192 * 7 6 4 33 33 H 1.00898 * 110.99743 * 144.38065 * 10 8 7 34 34 H 1.09000 * 109.47263 * 60.00269 * 11 10 8 35 35 H 1.09001 * 109.47582 * 299.99548 * 11 10 8 36 36 H 0.96999 * 120.00043 * 0.02562 * 14 12 11 37 37 H 0.97005 * 120.00019 * 180.02562 * 18 17 15 38 38 H 1.08992 * 110.48899 * 98.42731 * 23 4 3 39 39 H 1.08999 * 110.59713 * 335.83422 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 6 3.9371 1.5059 0.0008 5 1 4.2397 0.8599 0.8250 6 6 4.4000 0.9043 -1.3377 7 6 5.3528 1.9348 -1.9780 8 6 5.8753 2.7650 -0.7794 9 1 6.6792 2.2399 -0.2633 10 7 6.3229 4.0926 -1.2213 11 6 7.7548 4.0831 -1.5495 12 6 8.1766 5.4589 -1.9971 13 8 7.3633 6.3575 -2.0433 14 7 9.4565 5.6896 -2.3507 15 6 9.8401 6.9410 -2.7584 16 1 9.1168 7.7421 -2.7958 17 6 11.1596 7.1787 -3.1236 18 7 12.0396 6.2037 -3.0786 19 14 11.6826 8.8840 -3.6784 20 1 11.4314 9.8585 -2.5863 21 1 13.1298 8.8743 -4.0108 22 1 10.9019 9.2747 -4.8797 23 6 4.6248 2.8810 0.1272 24 1 -0.3634 0.5139 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 4.9271 -0.0336 -1.1631 30 1 3.5415 0.7344 -1.9874 31 1 4.8111 2.5726 -2.6766 32 1 6.1777 1.4305 -2.4813 33 1 6.1160 4.7939 -0.5260 34 1 7.9391 3.3675 -2.3507 35 1 8.3278 3.7968 -0.6676 36 1 10.1060 4.9699 -2.3176 37 1 12.9608 6.3697 -3.3332 38 1 4.9185 3.0671 1.1602 39 1 3.9668 3.6731 -0.2300 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233870645.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:36 Heat of formation + Delta-G solvation = -75.816124 kcal Electronic energy + Delta-G solvation = -18258.112419 eV Core-core repulsion = 15324.992013 eV Total energy + Delta-G solvation = -2933.120405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.28451 -39.21657 -36.09119 -35.07814 -33.64493 -33.25755 -29.88107 -29.53113 -27.32446 -25.42548 -24.24756 -21.68576 -21.17711 -20.97708 -19.90100 -17.95016 -17.46598 -16.90443 -16.81147 -16.30203 -16.05313 -15.89381 -15.56742 -15.23281 -15.06347 -14.49609 -14.15408 -13.65181 -13.47574 -13.37012 -13.15484 -12.91227 -12.85297 -12.50064 -12.42953 -12.34621 -12.12497 -12.05069 -11.99430 -11.64630 -11.51353 -11.50289 -10.66355 -10.34649 -10.02381 -9.33525 -8.64457 -8.46969 -5.95855 0.74052 1.39748 1.41555 1.52644 1.67677 2.04626 2.29062 2.89052 3.20145 3.40034 3.51542 3.75617 3.96717 4.05872 4.11923 4.28315 4.34283 4.41138 4.43723 4.50268 4.52381 4.56009 4.59080 4.72130 4.86779 4.89701 4.92952 5.06067 5.11198 5.22168 5.24730 5.36402 5.40567 5.91956 6.14669 6.39924 6.59823 7.12002 7.55507 8.11104 8.70174 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.063834 B = 0.002709 C = 0.002655 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 438.534523 B =10333.298786 C =10544.264801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.080 4.080 3 S -0.312 6.312 4 C -0.040 4.040 5 H 0.104 0.896 6 C -0.111 4.111 7 C -0.110 4.110 8 C 0.085 3.915 9 H 0.071 0.929 10 N -0.676 5.676 11 C 0.067 3.933 12 C 0.437 3.563 13 O -0.624 6.624 14 N -0.573 5.573 15 C -0.335 4.335 16 H 0.078 0.922 17 C -0.013 4.013 18 N -0.920 5.920 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.269 1.269 22 H -0.273 1.273 23 C -0.101 4.101 24 H 0.059 0.941 25 H 0.056 0.944 26 H 0.090 0.910 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.073 0.927 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.344 0.656 34 H 0.103 0.897 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.083 0.917 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.824 -17.361 7.280 23.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.228 4.228 3 S -0.085 6.085 4 C -0.169 4.169 5 H 0.122 0.878 6 C -0.151 4.151 7 C -0.149 4.149 8 C -0.026 4.026 9 H 0.088 0.912 10 N -0.309 5.309 11 C -0.066 4.066 12 C 0.224 3.776 13 O -0.511 6.511 14 N -0.210 5.210 15 C -0.465 4.465 16 H 0.096 0.904 17 C -0.213 4.213 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.194 1.194 22 H -0.198 1.198 23 C -0.140 4.140 24 H 0.078 0.922 25 H 0.076 0.924 26 H 0.108 0.892 27 H 0.107 0.893 28 H 0.108 0.892 29 H 0.106 0.894 30 H 0.092 0.908 31 H 0.076 0.924 32 H 0.090 0.910 33 H 0.164 0.836 34 H 0.121 0.879 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.102 0.898 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -15.969 -15.944 6.576 23.505 hybrid contribution 1.803 -0.383 0.511 1.912 sum -14.166 -16.327 7.087 22.748 Atomic orbital electron populations 1.21529 0.91755 1.03492 1.02612 1.23360 1.00459 0.93307 1.05670 1.87302 1.07304 1.15910 1.97997 1.23642 0.91446 1.00094 1.01736 0.87760 1.22490 0.99637 0.98718 0.94208 1.22340 0.98730 0.96598 0.97258 1.22630 0.95943 0.88926 0.95063 0.91163 1.60120 1.15044 1.06608 1.49117 1.21581 0.89763 0.93590 1.01630 1.20907 0.82298 0.91446 0.82925 1.90492 1.52597 1.48002 1.59991 1.41928 1.08818 1.11573 1.58693 1.19629 0.94928 0.88864 1.43066 0.90406 1.26053 0.95053 1.03222 0.96975 1.69665 1.04324 1.33707 1.48357 0.84984 0.77417 0.77204 0.78705 1.19655 1.19379 1.19788 1.22303 0.95773 0.95666 1.00253 0.92239 0.92440 0.89160 0.89322 0.89192 0.89359 0.90821 0.92445 0.90989 0.83645 0.87933 0.91373 0.76923 0.91253 0.89819 0.91507 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.92 71.98 0.71 -0.83 16 2 C -0.08 -1.04 6.54 71.98 0.47 -0.57 16 3 S -0.31 -6.28 20.69 -56.49 -1.17 -7.45 16 4 C -0.04 -0.71 3.42 31.32 0.11 -0.60 16 5 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 6 C -0.11 -1.86 6.37 31.32 0.20 -1.66 16 7 C -0.11 -2.45 6.51 31.67 0.21 -2.24 16 8 C 0.08 2.00 3.23 46.20 0.15 2.15 16 9 H 0.07 1.45 7.83 -2.38 -0.02 1.44 16 10 N -0.68 -21.93 6.02 -488.89 -2.94 -24.87 16 11 C 0.07 2.32 6.03 85.56 0.52 2.83 16 12 C 0.44 21.19 7.82 87.66 0.69 21.87 16 13 O -0.62 -35.49 15.78 -3.05 -0.05 -35.54 16 14 N -0.57 -29.82 5.29 -306.98 -1.62 -31.45 16 15 C -0.34 -19.32 9.68 84.04 0.81 -18.50 16 16 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 17 C -0.01 -0.71 5.50 84.93 0.47 -0.25 16 18 N -0.92 -49.89 13.05 21.66 0.28 -49.61 16 19 Si 0.99 43.32 29.55 68.60 2.03 45.35 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.27 -11.01 7.11 99.48 0.71 -10.30 16 22 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 23 C -0.10 -2.17 5.76 31.67 0.18 -1.99 16 24 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 25 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 26 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 27 H 0.09 1.02 7.92 -2.39 -0.02 1.00 16 28 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 29 H 0.09 1.13 8.14 -2.39 -0.02 1.11 16 30 H 0.07 1.28 7.37 -2.39 -0.02 1.26 16 31 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 32 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.34 11.80 8.13 -89.70 -0.73 11.07 16 34 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 35 H 0.07 2.04 8.08 -2.39 -0.02 2.03 16 36 H 0.40 19.49 7.90 -92.71 -0.73 18.76 16 37 H 0.28 14.12 8.31 -92.70 -0.77 13.35 16 38 H 0.08 1.60 8.14 -2.39 -0.02 1.58 16 39 H 0.07 1.75 7.82 -2.39 -0.02 1.73 16 Total: -1.00 -67.52 334.41 0.62 -66.90 By element: Atomic # 1 Polarization: 36.88 SS G_CDS: -0.42 Total: 36.46 kcal Atomic # 6 Polarization: -4.30 SS G_CDS: 4.51 Total: 0.21 kcal Atomic # 7 Polarization: -101.65 SS G_CDS: -4.28 Total: -105.93 kcal Atomic # 8 Polarization: -35.49 SS G_CDS: -0.05 Total: -35.54 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: -6.28 SS G_CDS: -1.17 Total: -7.45 kcal Total: -67.52 0.62 -66.90 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233870645.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.919 kcal (2) G-P(sol) polarization free energy of solvation -67.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.620 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.897 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds