Wall clock time and date at job start Mon Mar 30 2020 05:43:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81403 * 109.47070 * 2 1 4 4 C 1.81401 * 102.99700 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.05602 * 306.41730 * 4 3 2 6 6 C 1.54265 * 110.03189 * 67.83770 * 4 3 2 7 7 C 1.55033 * 104.28064 * 142.79967 * 6 4 3 8 8 C 1.54899 * 102.68272 * 322.23359 * 7 6 4 9 9 H 1.09000 * 110.48201 * 279.02803 * 8 7 6 10 10 N 1.46895 * 110.48288 * 156.52106 * 8 7 6 11 11 C 1.46893 * 111.00318 * 88.24099 * 10 8 7 12 12 C 1.50708 * 109.47146 * 179.97438 * 11 10 8 13 13 O 1.21288 * 119.99815 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99719 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99349 * 180.02562 * 14 12 11 16 16 H 1.07991 * 120.00515 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99490 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00316 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00267 * 19 17 15 22 22 H 1.48504 * 109.46913 * 150.00066 * 19 17 15 23 23 C 1.53882 * 110.02952 * 185.00168 * 4 3 2 24 24 H 1.09001 * 109.47082 * 59.99641 * 1 2 3 25 25 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47058 * 299.99760 * 1 2 3 27 27 H 1.09006 * 109.46778 * 240.00752 * 2 1 3 28 28 H 1.08995 * 109.47485 * 120.00316 * 2 1 3 29 29 H 1.09003 * 110.48505 * 261.57041 * 6 4 3 30 30 H 1.08999 * 110.48571 * 24.21586 * 6 4 3 31 31 H 1.08996 * 110.87253 * 203.90065 * 7 6 4 32 32 H 1.08997 * 110.69877 * 80.48342 * 7 6 4 33 33 H 1.00899 * 111.00063 * 324.28275 * 10 8 7 34 34 H 1.09002 * 109.47091 * 59.99845 * 11 10 8 35 35 H 1.09000 * 109.47343 * 299.99463 * 11 10 8 36 36 H 0.96996 * 120.00564 * 359.97438 * 14 12 11 37 37 H 0.97001 * 119.99781 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.02717 * 121.43010 * 23 4 3 39 39 H 1.09000 * 110.03182 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 -0.0008 5 1 4.2404 0.8595 0.8229 6 6 4.4000 0.9031 -1.3433 7 6 5.7442 1.6165 -1.6395 8 6 5.4791 3.0604 -1.1451 9 1 4.9294 3.6262 -1.8973 10 7 6.7441 3.7329 -0.8205 11 6 7.3063 4.3968 -2.0042 12 6 8.6001 5.0746 -1.6329 13 8 9.0129 5.0113 -0.4942 14 7 9.2978 5.7520 -2.5660 15 6 10.4751 6.3682 -2.2283 16 1 10.8431 6.3112 -1.2146 17 6 11.1948 7.0662 -3.1905 18 7 10.7472 7.1352 -4.4241 19 14 12.7984 7.9064 -2.7303 20 1 12.5199 9.2963 -2.2877 21 1 13.4510 7.1570 -1.6267 22 1 13.6993 7.9338 -3.9105 23 6 4.6233 2.8774 0.1252 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.5511 -0.1721 -1.2469 30 1 3.6751 1.1187 -2.1283 31 1 5.9614 1.6077 -2.7076 32 1 6.5562 1.1580 -1.0753 33 1 7.4060 3.0847 -0.4209 34 1 6.5999 5.1402 -2.3736 35 1 7.4939 3.6560 -2.7815 36 1 8.9675 5.8030 -3.4766 37 1 11.2495 7.6228 -5.0956 38 1 5.2595 2.8967 1.0100 39 1 3.8732 3.6658 0.1872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000233874359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:39 Heat of formation + Delta-G solvation = -56.005345 kcal Electronic energy + Delta-G solvation = -18266.808640 eV Core-core repulsion = 15334.547295 eV Total energy + Delta-G solvation = -2932.261345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -38.85821 -37.83127 -34.27038 -33.54622 -33.09435 -31.19811 -28.91571 -28.33924 -25.66868 -23.96009 -23.43441 -20.96022 -20.26306 -19.20050 -17.87990 -16.71961 -16.32609 -15.89587 -15.39274 -15.03293 -14.87126 -14.46991 -14.25869 -13.83471 -13.53765 -13.17223 -12.94105 -12.73787 -12.41054 -12.13289 -11.92396 -11.75729 -11.58532 -11.40767 -11.27405 -11.17857 -11.01195 -10.83590 -10.68677 -10.38428 -10.20418 -9.97621 -9.49572 -8.43552 -8.00522 -7.93564 -7.85448 -6.40357 -3.81105 1.47176 2.36633 3.19038 3.27415 3.33310 3.92673 4.06053 4.23906 4.37869 4.51197 4.58500 4.64644 4.99442 5.04219 5.13367 5.22007 5.23890 5.27026 5.30485 5.36309 5.42530 5.46034 5.51643 5.67433 5.72470 5.77861 5.85142 6.01172 6.01940 6.09417 6.17691 6.31516 7.28413 7.56572 7.69861 8.07998 8.62932 9.19351 9.56043 10.07579 10.77426 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.066250 B = 0.002686 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.539514 B =10423.759253 C =10527.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.093 4.093 3 S -0.261 6.261 4 C -0.054 4.054 5 H 0.087 0.913 6 C -0.116 4.116 7 C -0.154 4.154 8 C 0.088 3.912 9 H 0.085 0.915 10 N -0.662 5.662 11 C 0.051 3.949 12 C 0.441 3.559 13 O -0.584 6.584 14 N -0.564 5.564 15 C -0.299 4.299 16 H 0.103 0.897 17 C 0.021 3.979 18 N -0.902 5.902 19 Si 0.930 3.070 20 H -0.278 1.278 21 H -0.270 1.270 22 H -0.284 1.284 23 C -0.091 4.091 24 H 0.064 0.936 25 H 0.068 0.932 26 H 0.063 0.937 27 H 0.079 0.921 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.079 0.921 31 H 0.071 0.929 32 H 0.071 0.929 33 H 0.350 0.650 34 H 0.086 0.914 35 H 0.044 0.956 36 H 0.392 0.608 37 H 0.271 0.729 38 H 0.085 0.915 39 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.143 -14.460 3.543 22.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.241 4.241 3 S -0.034 6.034 4 C -0.184 4.184 5 H 0.105 0.895 6 C -0.156 4.156 7 C -0.195 4.195 8 C -0.024 4.024 9 H 0.103 0.897 10 N -0.293 5.293 11 C -0.082 4.082 12 C 0.226 3.774 13 O -0.468 6.468 14 N -0.201 5.201 15 C -0.428 4.428 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.757 3.243 20 H -0.204 1.204 21 H -0.194 1.194 22 H -0.210 1.210 23 C -0.130 4.130 24 H 0.083 0.917 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.098 0.902 28 H 0.096 0.904 29 H 0.083 0.917 30 H 0.098 0.902 31 H 0.089 0.911 32 H 0.090 0.910 33 H 0.170 0.830 34 H 0.104 0.896 35 H 0.062 0.938 36 H 0.225 0.775 37 H 0.081 0.919 38 H 0.104 0.896 39 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -17.682 -12.887 4.409 22.320 hybrid contribution 1.616 -1.450 -0.972 2.379 sum -16.066 -14.336 3.437 21.805 Atomic orbital electron populations 1.21511 0.92428 1.02348 1.03186 1.23284 1.00043 0.96076 1.04685 1.87020 1.06165 1.12288 1.97885 1.23819 0.92167 1.01496 1.00886 0.89474 1.22712 0.97822 0.99302 0.95746 1.23307 0.97099 0.97281 1.01786 1.22428 0.91705 0.92167 0.96054 0.89665 1.60083 1.05535 1.35094 1.28561 1.21696 0.96490 0.98178 0.91817 1.19837 0.86517 0.84602 0.86415 1.90519 1.71028 1.64964 1.20279 1.41869 1.21118 1.46122 1.10997 1.19704 0.97567 1.27986 0.97581 0.87933 1.25268 0.99920 0.97931 0.94895 1.69615 1.40032 1.42751 1.01963 0.85854 0.80976 0.79499 0.77933 1.20378 1.19439 1.20957 1.21950 0.98039 0.93494 0.99523 0.91698 0.91336 0.91744 0.90242 0.90386 0.91678 0.90217 0.91072 0.91021 0.82957 0.89601 0.93843 0.77454 0.91890 0.89605 0.90512 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.87 9.92 37.16 0.37 -0.50 16 2 C -0.09 -0.69 6.55 37.16 0.24 -0.45 16 3 S -0.26 -2.67 20.69 -107.50 -2.22 -4.89 16 4 C -0.05 -0.54 3.42 -25.61 -0.09 -0.62 16 5 H 0.09 0.81 8.14 -51.93 -0.42 0.39 16 6 C -0.12 -1.06 6.26 -25.00 -0.16 -1.21 16 7 C -0.15 -1.63 6.47 -24.66 -0.16 -1.79 16 8 C 0.09 1.10 3.16 -66.05 -0.21 0.89 16 9 H 0.09 1.07 7.85 -51.93 -0.41 0.67 16 10 N -0.66 -10.72 5.90 -106.24 -0.63 -11.34 16 11 C 0.05 0.90 6.02 -4.98 -0.03 0.87 16 12 C 0.44 10.52 7.82 -10.98 -0.09 10.44 16 13 O -0.58 -16.03 15.78 5.55 0.09 -15.94 16 14 N -0.56 -14.46 5.29 -10.96 -0.06 -14.52 16 15 C -0.30 -8.42 9.68 -14.93 -0.14 -8.56 16 16 H 0.10 3.03 7.16 -52.49 -0.38 2.65 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.72 13.05 55.50 0.72 -24.00 16 19 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 20 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 21 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 22 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 23 C -0.09 -1.06 6.22 -25.61 -0.16 -1.22 16 24 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 25 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.08 0.55 8.14 -51.92 -0.42 0.13 16 28 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.08 0.74 7.81 -51.93 -0.41 0.34 16 31 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.07 0.77 7.81 -51.93 -0.41 0.36 16 33 H 0.35 5.82 7.97 -39.29 -0.31 5.51 16 34 H 0.09 1.43 8.08 -51.93 -0.42 1.01 16 35 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.39 9.59 7.90 -40.82 -0.32 9.27 16 37 H 0.27 7.02 8.31 -40.82 -0.34 6.69 16 38 H 0.09 1.06 8.04 -51.93 -0.42 0.64 16 39 H 0.08 0.95 7.60 -51.93 -0.39 0.56 16 LS Contribution 334.39 15.07 5.04 5.04 Total: -1.00 -30.73 334.39 -9.00 -39.73 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -6.40 Total: 11.41 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.52 Total: -1.68 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: 0.04 Total: -49.85 kcal Atomic # 8 Polarization: -16.03 SS G_CDS: 0.09 Total: -15.94 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: -2.67 SS G_CDS: -2.22 Total: -4.89 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -30.73 -9.00 -39.73 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233874359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.275 kcal (2) G-P(sol) polarization free energy of solvation -30.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.999 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds