Wall clock time and date at job start Mon Mar 30 2020 05:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 S 1.81403 * 109.47070 * 2 1 4 4 C 1.81401 * 102.99700 * 180.02562 * 3 2 1 5 5 H 1.09000 * 110.05602 * 306.41730 * 4 3 2 6 6 C 1.54265 * 110.03189 * 67.83770 * 4 3 2 7 7 C 1.55033 * 104.28064 * 142.79967 * 6 4 3 8 8 C 1.54899 * 102.68272 * 322.23359 * 7 6 4 9 9 H 1.09000 * 110.48201 * 279.02803 * 8 7 6 10 10 N 1.46895 * 110.48288 * 156.52106 * 8 7 6 11 11 C 1.46893 * 111.00318 * 88.24099 * 10 8 7 12 12 C 1.50708 * 109.47146 * 179.97438 * 11 10 8 13 13 O 1.21288 * 119.99815 * 359.97438 * 12 11 10 14 14 N 1.34774 * 119.99719 * 180.02562 * 12 11 10 15 15 C 1.37101 * 119.99349 * 180.02562 * 14 12 11 16 16 H 1.07991 * 120.00515 * 359.97438 * 15 14 12 17 17 C 1.38955 * 119.99490 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00236 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99845 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.47174 * 270.00316 * 19 17 15 21 21 H 1.48501 * 109.47062 * 30.00267 * 19 17 15 22 22 H 1.48504 * 109.46913 * 150.00066 * 19 17 15 23 23 C 1.53882 * 110.02952 * 185.00168 * 4 3 2 24 24 H 1.09001 * 109.47082 * 59.99641 * 1 2 3 25 25 H 1.09000 * 109.46989 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47058 * 299.99760 * 1 2 3 27 27 H 1.09006 * 109.46778 * 240.00752 * 2 1 3 28 28 H 1.08995 * 109.47485 * 120.00316 * 2 1 3 29 29 H 1.09003 * 110.48505 * 261.57041 * 6 4 3 30 30 H 1.08999 * 110.48571 * 24.21586 * 6 4 3 31 31 H 1.08996 * 110.87253 * 203.90065 * 7 6 4 32 32 H 1.08997 * 110.69877 * 80.48342 * 7 6 4 33 33 H 1.00899 * 111.00063 * 324.28275 * 10 8 7 34 34 H 1.09002 * 109.47091 * 59.99845 * 11 10 8 35 35 H 1.09000 * 109.47343 * 299.99463 * 11 10 8 36 36 H 0.96996 * 120.00564 * 359.97438 * 14 12 11 37 37 H 0.97001 * 119.99781 * 179.97438 * 18 17 15 38 38 H 1.08997 * 110.02717 * 121.43010 * 23 4 3 39 39 H 1.09000 * 110.03182 * 0.02562 * 23 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 16 2.1347 1.7103 0.0000 4 6 3.9372 1.5058 -0.0008 5 1 4.2404 0.8595 0.8229 6 6 4.4000 0.9031 -1.3433 7 6 5.7442 1.6165 -1.6395 8 6 5.4791 3.0604 -1.1451 9 1 4.9294 3.6262 -1.8973 10 7 6.7441 3.7329 -0.8205 11 6 7.3063 4.3968 -2.0042 12 6 8.6001 5.0746 -1.6329 13 8 9.0129 5.0113 -0.4942 14 7 9.2978 5.7520 -2.5660 15 6 10.4751 6.3682 -2.2283 16 1 10.8431 6.3112 -1.2146 17 6 11.1948 7.0662 -3.1905 18 7 10.7472 7.1352 -4.4241 19 14 12.7984 7.9064 -2.7303 20 1 12.5199 9.2963 -2.2877 21 1 13.4510 7.1570 -1.6267 22 1 13.6993 7.9338 -3.9105 23 6 4.6233 2.8774 0.1252 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5138 0.8899 29 1 4.5511 -0.1721 -1.2469 30 1 3.6751 1.1187 -2.1283 31 1 5.9614 1.6077 -2.7076 32 1 6.5562 1.1580 -1.0753 33 1 7.4060 3.0847 -0.4209 34 1 6.5999 5.1402 -2.3736 35 1 7.4939 3.6560 -2.7815 36 1 8.9675 5.8030 -3.4766 37 1 11.2495 7.6228 -5.0956 38 1 5.2595 2.8967 1.0100 39 1 3.8732 3.6658 0.1872 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000233874359.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:43:38 Heat of formation + Delta-G solvation = -76.135304 kcal Electronic energy + Delta-G solvation = -18267.681541 eV Core-core repulsion = 15334.547295 eV Total energy + Delta-G solvation = -2933.134246 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.31631 -39.26748 -36.07908 -35.02651 -33.64023 -33.25495 -29.80007 -29.56862 -27.28780 -25.39338 -24.22430 -21.80771 -21.35483 -20.92646 -19.91460 -17.85246 -17.57284 -16.92343 -16.75847 -16.35181 -15.99537 -15.84307 -15.61907 -15.22557 -14.65079 -14.52110 -14.03864 -13.73718 -13.48206 -13.37455 -13.35146 -12.95395 -12.79681 -12.60910 -12.42504 -12.33689 -12.18972 -12.11160 -11.98447 -11.67478 -11.54049 -11.50805 -10.71293 -10.35213 -10.02152 -9.26428 -8.64005 -8.46992 -5.95872 0.75584 1.38028 1.41704 1.54567 1.66622 2.04602 2.29005 2.88992 3.20137 3.40061 3.55218 3.70093 4.05745 4.07843 4.15074 4.28700 4.30786 4.38973 4.41083 4.49178 4.53741 4.56240 4.63669 4.65406 4.88305 4.91489 4.93341 4.97159 5.11460 5.21637 5.24166 5.27370 5.40716 5.91734 6.13682 6.42363 6.59720 7.12075 7.55670 8.10927 8.70410 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.066250 B = 0.002686 C = 0.002659 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 422.539514 B =10423.759253 C =10527.036497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.082 4.082 3 S -0.305 6.305 4 C -0.044 4.044 5 H 0.094 0.906 6 C -0.106 4.106 7 C -0.149 4.149 8 C 0.088 3.912 9 H 0.086 0.914 10 N -0.676 5.676 11 C 0.066 3.934 12 C 0.437 3.563 13 O -0.624 6.624 14 N -0.573 5.573 15 C -0.334 4.334 16 H 0.079 0.921 17 C -0.014 4.014 18 N -0.920 5.920 19 Si 0.994 3.006 20 H -0.271 1.271 21 H -0.273 1.273 22 H -0.270 1.270 23 C -0.088 4.088 24 H 0.059 0.941 25 H 0.088 0.912 26 H 0.058 0.942 27 H 0.089 0.911 28 H 0.086 0.914 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.070 0.930 33 H 0.346 0.654 34 H 0.101 0.899 35 H 0.068 0.932 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.075 0.925 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.754 -15.664 2.904 23.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.230 4.230 3 S -0.078 6.078 4 C -0.173 4.173 5 H 0.113 0.887 6 C -0.146 4.146 7 C -0.189 4.189 8 C -0.023 4.023 9 H 0.105 0.895 10 N -0.308 5.308 11 C -0.066 4.066 12 C 0.225 3.775 13 O -0.511 6.511 14 N -0.211 5.211 15 C -0.464 4.464 16 H 0.097 0.903 17 C -0.214 4.214 18 N -0.561 5.561 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.195 1.195 23 C -0.127 4.127 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.077 0.923 27 H 0.108 0.892 28 H 0.104 0.896 29 H 0.101 0.899 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.089 0.911 33 H 0.166 0.834 34 H 0.119 0.881 35 H 0.086 0.914 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.094 0.906 39 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.324 -14.100 3.746 23.423 hybrid contribution 1.729 -1.105 -0.742 2.182 sum -16.595 -15.205 3.004 22.707 Atomic orbital electron populations 1.21527 0.91669 1.03466 1.02682 1.23352 1.00542 0.93557 1.05552 1.87200 1.06917 1.15667 1.97999 1.23711 0.91583 1.00281 1.01733 0.88742 1.22659 0.96726 1.00120 0.95094 1.23232 0.97937 0.95751 1.01972 1.22479 0.89931 0.93248 0.96601 0.89533 1.60075 1.06515 1.35969 1.28213 1.21543 0.93341 0.98758 0.92958 1.20899 0.87760 0.83403 0.85449 1.90486 1.72472 1.66112 1.21980 1.41940 1.20950 1.46629 1.11534 1.19668 0.99399 1.30213 0.97089 0.90343 1.26061 1.02776 0.97848 0.94681 1.69674 1.41129 1.42800 1.02508 0.84918 0.77068 0.78369 0.77919 1.19688 1.19737 1.19451 1.21872 0.97606 0.94549 0.98719 0.92181 0.89293 0.92307 0.89230 0.89578 0.89860 0.90098 0.90532 0.91084 0.83440 0.88107 0.91366 0.76946 0.91273 0.90607 0.91567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 9.92 71.98 0.71 -0.75 16 2 C -0.08 -1.05 6.55 71.98 0.47 -0.58 16 3 S -0.31 -5.89 20.69 -56.49 -1.17 -7.05 16 4 C -0.04 -0.80 3.42 31.32 0.11 -0.69 16 5 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 6 C -0.11 -1.68 6.26 31.72 0.20 -1.48 16 7 C -0.15 -2.84 6.47 31.94 0.21 -2.63 16 8 C 0.09 2.10 3.16 45.99 0.15 2.24 16 9 H 0.09 2.06 7.85 -2.39 -0.02 2.04 16 10 N -0.68 -21.56 5.90 -490.03 -2.89 -24.45 16 11 C 0.07 2.30 6.02 85.56 0.52 2.82 16 12 C 0.44 21.11 7.82 87.66 0.69 21.79 16 13 O -0.62 -35.11 15.78 -3.05 -0.05 -35.16 16 14 N -0.57 -29.79 5.29 -306.98 -1.62 -31.41 16 15 C -0.33 -19.19 9.68 84.04 0.81 -18.38 16 16 H 0.08 4.80 7.16 -2.92 -0.02 4.78 16 17 C -0.01 -0.75 5.50 84.93 0.47 -0.29 16 18 N -0.92 -49.97 13.05 21.66 0.28 -49.69 16 19 Si 0.99 43.24 29.55 68.60 2.03 45.27 16 20 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 21 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 22 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 23 C -0.09 -2.01 6.22 31.32 0.19 -1.81 16 24 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 25 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.09 0.98 8.14 -2.39 -0.02 0.97 16 28 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 30 H 0.08 1.30 7.81 -2.39 -0.02 1.28 16 31 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 32 H 0.07 1.39 7.81 -2.39 -0.02 1.37 16 33 H 0.35 11.45 7.97 -89.69 -0.71 10.74 16 34 H 0.10 3.22 8.08 -2.39 -0.02 3.20 16 35 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 36 H 0.40 19.52 7.90 -92.71 -0.73 18.78 16 37 H 0.28 14.09 8.31 -92.71 -0.77 13.32 16 38 H 0.08 1.86 8.04 -2.39 -0.02 1.85 16 39 H 0.07 1.64 7.60 -2.39 -0.02 1.62 16 Total: -1.00 -66.35 334.39 0.69 -65.66 By element: Atomic # 1 Polarization: 36.99 SS G_CDS: -0.40 Total: 36.59 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: 4.52 Total: 0.24 kcal Atomic # 7 Polarization: -101.31 SS G_CDS: -4.23 Total: -105.55 kcal Atomic # 8 Polarization: -35.11 SS G_CDS: -0.05 Total: -35.16 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 2.03 Total: 45.27 kcal Atomic # 16 Polarization: -5.89 SS G_CDS: -1.17 Total: -7.05 kcal Total: -66.35 0.69 -65.66 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000233874359.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.475 kcal (2) G-P(sol) polarization free energy of solvation -66.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds