Wall clock time and date at job start Mon Mar 30 2020 05:52:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46906 * 1 3 3 C 1.46898 * 111.00136 * 2 1 4 4 C 1.46900 * 111.00036 * 123.96108 * 2 1 3 5 5 C 1.52993 * 109.46923 * 169.99800 * 4 2 1 6 6 C 1.50703 * 109.46880 * 179.97438 * 5 4 2 7 7 O 1.21276 * 120.00036 * 359.97438 * 6 5 4 8 8 N 1.34782 * 120.00028 * 179.97438 * 6 5 4 9 9 C 1.46376 * 119.64543 * 353.93803 * 8 6 5 10 10 C 1.52729 * 109.76732 * 245.08151 * 9 8 6 11 11 S 1.81741 * 108.84287 * 302.52080 * 10 9 8 12 12 C 1.81743 * 102.30399 * 54.42370 * 11 10 9 13 13 C 1.46377 * 119.64500 * 174.20502 * 8 6 5 14 14 H 1.09005 * 109.46745 * 234.91361 * 13 8 6 15 15 C 1.50699 * 109.46839 * 354.90686 * 13 8 6 16 16 H 1.07997 * 120.00313 * 302.60209 * 15 13 8 17 17 C 1.37879 * 119.99901 * 122.60870 * 15 13 8 18 18 N 1.31518 * 119.99587 * 359.97438 * 17 15 13 19 19 Si 1.86791 * 120.00311 * 180.02562 * 17 15 13 20 20 H 1.48492 * 109.47510 * 89.99576 * 19 17 15 21 21 H 1.48501 * 109.47236 * 209.99699 * 19 17 15 22 22 H 1.48504 * 109.47027 * 329.99583 * 19 17 15 23 23 H 1.09000 * 109.46540 * 296.04471 * 1 2 3 24 24 H 1.09001 * 109.47090 * 56.03894 * 1 2 3 25 25 H 1.08999 * 109.47064 * 176.04714 * 1 2 3 26 26 H 1.09002 * 109.47059 * 183.95750 * 3 2 1 27 27 H 1.08996 * 109.47036 * 303.95692 * 3 2 1 28 28 H 1.08996 * 109.46689 * 63.95752 * 3 2 1 29 29 H 1.09004 * 109.46387 * 289.99367 * 4 2 1 30 30 H 1.08994 * 109.47351 * 49.99455 * 4 2 1 31 31 H 1.08997 * 109.47130 * 299.99426 * 5 4 2 32 32 H 1.09001 * 109.47765 * 59.99748 * 5 4 2 33 33 H 1.09001 * 109.46930 * 5.08986 * 9 8 6 34 34 H 1.09003 * 109.47050 * 125.08173 * 9 8 6 35 35 H 1.09004 * 109.65717 * 182.65371 * 10 9 8 36 36 H 1.09003 * 109.46784 * 62.27586 * 10 9 8 37 37 H 1.09004 * 109.58134 * 185.66221 * 12 11 10 38 38 H 1.09003 * 109.69896 * 65.32557 * 12 11 10 39 39 H 0.97002 * 119.99515 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9701 6 6 4.0446 -1.7409 2.1374 7 8 3.2964 -2.1121 3.0167 8 7 5.3592 -2.0307 2.2041 9 6 6.2323 -1.6966 1.0778 10 6 6.7832 -2.9771 0.4537 11 16 7.6667 -3.9200 1.7318 12 6 6.4093 -4.0789 3.0345 13 6 5.8974 -2.6815 3.3997 14 1 6.7189 -2.0865 3.7986 15 6 4.8122 -2.7998 4.4387 16 1 4.3012 -1.9152 4.7889 17 6 4.4719 -4.0374 4.9423 18 7 5.0940 -5.1146 4.5155 19 14 3.1264 -4.1842 6.2296 20 1 1.8161 -4.3733 5.5569 21 1 3.4053 -5.3497 7.1065 22 1 3.0880 -2.9462 7.0489 23 1 -0.3632 0.4512 0.9233 24 1 -0.3633 0.5741 -0.8524 25 1 -0.3633 -1.0252 -0.0708 26 1 3.0829 1.3432 -0.0709 27 1 1.5899 1.9163 -0.8524 28 1 1.7045 1.8722 0.9233 29 1 1.7976 -0.2248 2.0627 30 1 1.5090 -1.7407 1.1755 31 1 3.7023 -1.4966 0.0449 32 1 3.9910 0.0192 0.9321 33 1 5.6639 -1.1456 0.3285 34 1 7.0606 -1.0818 1.4300 35 1 7.4698 -2.7252 -0.3545 36 1 5.9594 -3.5744 0.0630 37 1 6.8515 -4.5474 3.9138 38 1 5.5811 -4.6885 2.6733 39 1 4.8543 -5.9854 4.8695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259908413.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:52:38 Heat of formation + Delta-G solvation = -9.285999 kcal Electronic energy + Delta-G solvation = -20159.159368 eV Core-core repulsion = 17228.923926 eV Total energy + Delta-G solvation = -2930.235442 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.93886 -38.45591 -37.11028 -35.63412 -32.48865 -31.68672 -30.17399 -28.46227 -27.60683 -26.07934 -24.17501 -23.25393 -21.88984 -20.07703 -18.94000 -17.61243 -17.22236 -16.78684 -16.56849 -16.33706 -15.88252 -15.67333 -15.45951 -15.04678 -14.75541 -14.51967 -14.16148 -13.78894 -13.59222 -13.26636 -13.10785 -12.87790 -12.72309 -12.67475 -12.59535 -12.47371 -12.31020 -12.18487 -11.84701 -11.72797 -11.42835 -11.04856 -10.45535 -10.02769 -9.38008 -9.35142 -8.43573 -7.79034 -6.02432 1.17574 1.35095 1.41205 1.47697 1.95633 2.05033 2.30283 2.49396 3.02367 3.26558 3.89384 3.93921 4.05182 4.13091 4.28487 4.31121 4.43413 4.49755 4.57562 4.66004 4.69332 4.72804 4.76313 4.76897 4.95975 4.98013 4.98154 4.99941 5.08110 5.23749 5.71351 5.79382 5.98208 6.02605 6.07395 6.09274 6.68350 6.95414 7.42576 7.73986 8.84019 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.014745 B = 0.007779 C = 0.005405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.497764 B = 3598.360157 C = 5178.668972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.553 5.553 3 C 0.018 3.982 4 C 0.079 3.921 5 C -0.125 4.125 6 C 0.493 3.507 7 O -0.544 6.544 8 N -0.621 5.621 9 C 0.103 3.897 10 C -0.072 4.072 11 S -0.404 6.404 12 C 0.022 3.978 13 C 0.248 3.752 14 H 0.027 0.973 15 C -0.443 4.443 16 H 0.049 0.951 17 C 0.007 3.993 18 N -0.914 5.914 19 Si 0.959 3.041 20 H -0.294 1.294 21 H -0.281 1.281 22 H -0.276 1.276 23 H 0.021 0.979 24 H 0.089 0.911 25 H 0.064 0.936 26 H 0.079 0.921 27 H 0.086 0.914 28 H 0.020 0.980 29 H 0.021 0.979 30 H 0.058 0.942 31 H 0.110 0.890 32 H 0.110 0.890 33 H 0.122 0.878 34 H 0.081 0.919 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.101 0.899 38 H 0.071 0.929 39 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.421 10.804 -11.905 16.258 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.277 5.277 3 C -0.130 4.130 4 C -0.050 4.050 5 C -0.165 4.165 6 C 0.281 3.719 7 O -0.420 6.420 8 N -0.356 5.356 9 C -0.021 4.021 10 C -0.221 4.221 11 S -0.180 6.180 12 C -0.126 4.126 13 C 0.145 3.855 14 H 0.045 0.955 15 C -0.483 4.483 16 H 0.067 0.933 17 C -0.188 4.188 18 N -0.560 5.560 19 Si 0.788 3.212 20 H -0.221 1.221 21 H -0.206 1.206 22 H -0.201 1.201 23 H 0.039 0.961 24 H 0.108 0.892 25 H 0.083 0.917 26 H 0.098 0.902 27 H 0.104 0.896 28 H 0.038 0.962 29 H 0.040 0.960 30 H 0.077 0.923 31 H 0.128 0.872 32 H 0.128 0.872 33 H 0.140 0.860 34 H 0.100 0.900 35 H 0.155 0.845 36 H 0.090 0.910 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -1.614 9.794 -11.820 15.435 hybrid contribution -2.129 0.198 1.724 2.747 sum -3.743 9.992 -10.095 14.689 Atomic orbital electron populations 1.22429 0.86485 1.02536 1.01031 1.62028 1.08783 1.14817 1.42044 1.22547 1.01728 0.87830 1.00917 1.21641 0.94410 0.97902 0.91018 1.21689 0.95928 1.01644 0.97244 1.21251 0.82255 0.80488 0.87933 1.90798 1.57693 1.53023 1.40502 1.48709 1.08196 1.60564 1.18103 1.21815 0.95504 0.95592 0.89186 1.23594 1.02346 0.98132 0.98018 1.86751 1.32352 1.75030 1.23828 1.24554 0.94763 0.99074 0.94221 1.19191 0.93793 0.89522 0.82998 0.95500 1.21199 1.16041 0.93410 1.17628 0.93319 1.25375 0.98575 0.95476 0.99379 1.70126 1.42562 0.98681 1.44622 0.85504 0.79685 0.77181 0.78858 1.22059 1.20611 1.20087 0.96073 0.89238 0.91734 0.90240 0.89570 0.96176 0.96035 0.92332 0.87196 0.87172 0.85979 0.90050 0.84537 0.91043 0.88123 0.91051 0.93142 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.47 9.57 127.69 1.22 1.69 16 2 N -0.55 -12.79 5.02 -948.86 -4.76 -17.56 16 3 C 0.02 0.32 9.32 127.69 1.19 1.51 16 4 C 0.08 2.34 4.25 86.30 0.37 2.70 16 5 C -0.12 -3.50 3.94 29.85 0.12 -3.38 16 6 C 0.49 20.09 7.54 87.66 0.66 20.75 16 7 O -0.54 -27.87 12.21 -3.02 -0.04 -27.91 16 8 N -0.62 -24.88 2.80 -802.67 -2.25 -27.12 16 9 C 0.10 2.93 6.10 86.31 0.53 3.46 16 10 C -0.07 -2.13 6.65 71.89 0.48 -1.66 16 11 S -0.40 -16.29 22.30 -56.49 -1.26 -17.55 16 12 C 0.02 1.08 4.25 72.06 0.31 1.39 16 13 C 0.25 12.14 3.26 44.35 0.14 12.28 16 14 H 0.03 1.35 8.14 -2.38 -0.02 1.33 16 15 C -0.44 -24.61 5.95 25.60 0.15 -24.46 16 16 H 0.05 2.86 6.87 -2.91 -0.02 2.84 16 17 C 0.01 0.38 5.39 84.65 0.46 0.84 16 18 N -0.91 -51.58 8.32 21.45 0.18 -51.40 16 19 Si 0.96 47.33 29.54 68.60 2.03 49.35 16 20 H -0.29 -14.95 7.11 99.48 0.71 -14.25 16 21 H -0.28 -13.21 7.11 99.48 0.71 -12.51 16 22 H -0.28 -13.38 7.11 99.48 0.71 -12.67 16 23 H 0.02 0.44 8.14 -2.39 -0.02 0.42 16 24 H 0.09 1.38 8.12 -2.39 -0.02 1.36 16 25 H 0.06 1.34 8.12 -2.39 -0.02 1.32 16 26 H 0.08 1.29 6.47 -2.39 -0.02 1.27 16 27 H 0.09 1.21 8.12 -2.39 -0.02 1.19 16 28 H 0.02 0.38 8.14 -2.39 -0.02 0.36 16 29 H 0.02 0.71 8.08 -2.39 -0.02 0.70 16 30 H 0.06 1.98 8.02 -2.39 -0.02 1.96 16 31 H 0.11 2.69 7.61 -2.39 -0.02 2.67 16 32 H 0.11 2.48 6.34 -2.39 -0.02 2.46 16 33 H 0.12 2.47 5.73 -2.39 -0.01 2.46 16 34 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 35 H 0.14 3.00 8.14 -2.39 -0.02 2.98 16 36 H 0.07 2.22 8.14 -2.39 -0.02 2.20 16 37 H 0.10 5.55 6.59 -2.39 -0.02 5.53 16 38 H 0.07 4.01 6.62 -2.39 -0.02 4.00 16 39 H 0.26 14.06 8.31 -92.71 -0.77 13.29 16 Total: -1.00 -66.51 311.58 0.55 -65.96 By element: Atomic # 1 Polarization: 10.06 SS G_CDS: 1.02 Total: 11.08 kcal Atomic # 6 Polarization: 9.51 SS G_CDS: 5.62 Total: 15.13 kcal Atomic # 7 Polarization: -89.25 SS G_CDS: -6.83 Total: -96.08 kcal Atomic # 8 Polarization: -27.87 SS G_CDS: -0.04 Total: -27.91 kcal Atomic # 14 Polarization: 47.33 SS G_CDS: 2.03 Total: 49.35 kcal Atomic # 16 Polarization: -16.29 SS G_CDS: -1.26 Total: -17.55 kcal Total: -66.51 0.55 -65.96 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259908413.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.677 kcal (2) G-P(sol) polarization free energy of solvation -66.510 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.546 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds