Wall clock time and date at job start Mon Mar 30 2020 04:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38197 * 119.49792 * 2 1 4 4 C 1.39441 * 119.29286 * 179.75171 * 3 2 1 5 5 N 1.39197 * 120.82490 * 180.30082 * 4 3 2 6 6 C 1.46898 * 110.99941 * 304.52083 * 5 4 3 7 7 C 1.53240 * 109.33901 * 172.74775 * 6 5 4 8 8 N 1.47073 * 108.52270 * 53.83074 * 7 6 5 9 9 C 1.36943 * 120.88278 * 128.83826 * 8 7 6 10 10 H 1.07999 * 119.99792 * 206.62488 * 9 8 7 11 11 C 1.38809 * 119.99680 * 26.61915 * 9 8 7 12 12 N 1.31622 * 119.99985 * 17.04855 * 11 9 8 13 13 Si 1.86803 * 119.99982 * 197.04050 * 11 9 8 14 14 H 1.48497 * 109.46867 * 90.00405 * 13 11 9 15 15 H 1.48502 * 109.47257 * 210.00837 * 13 11 9 16 16 H 1.48497 * 109.46981 * 330.00706 * 13 11 9 17 17 C 1.47081 * 118.23888 * 308.81468 * 8 7 6 18 18 C 1.46900 * 111.00112 * 180.21849 * 5 4 3 19 19 C 1.39389 * 118.35283 * 0.51484 * 4 3 2 20 20 C 1.39147 * 118.95354 * 359.51007 * 19 4 3 21 21 C 1.43198 * 119.70308 * 180.25468 * 20 19 4 22 22 N 4.69921 * 132.23225 * 180.02562 * 2 1 3 23 23 N 1.31681 * 119.50396 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46891 * 269.97100 * 1 2 3 25 25 H 1.08993 * 109.47500 * 29.97545 * 1 2 3 26 26 H 1.08997 * 109.47108 * 149.97712 * 1 2 3 27 27 H 1.07999 * 120.35237 * 0.05003 * 3 2 1 28 28 H 1.08998 * 109.49131 * 292.70550 * 6 5 4 29 29 H 1.09001 * 109.48947 * 52.78574 * 6 5 4 30 30 H 1.08997 * 109.62555 * 294.11541 * 7 6 5 31 31 H 1.09004 * 109.78523 * 173.63711 * 7 6 5 32 32 H 0.97001 * 119.99598 * 179.97438 * 12 11 9 33 33 H 1.09007 * 109.62604 * 291.47745 * 17 8 7 34 34 H 1.08996 * 109.79317 * 170.99091 * 17 8 7 35 35 H 1.08994 * 109.49366 * 307.21580 * 18 5 4 36 36 H 1.09004 * 109.48986 * 67.26584 * 18 5 4 37 37 H 1.08004 * 120.52486 * 179.78668 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2028 0.0000 4 6 3.5818 1.1978 0.0053 5 7 4.2993 2.3906 0.0117 6 6 3.9090 3.2459 -1.1171 7 6 4.5831 4.6145 -0.9736 8 7 6.0314 4.4083 -0.8214 9 6 6.9243 5.0836 -1.6101 10 1 7.8951 4.6568 -1.8140 11 6 6.5814 6.3167 -2.1474 12 7 5.5667 6.9919 -1.6505 13 14 7.5601 7.0179 -3.5756 14 1 6.9563 6.5705 -4.8564 15 1 7.5386 8.5013 -3.5096 16 1 8.9636 6.5393 -3.4962 17 6 6.4953 3.4579 0.2008 18 6 5.7459 2.1348 0.0112 19 6 4.2394 -0.0312 -0.0006 20 6 3.4836 -1.1995 -0.0011 21 6 4.1426 -2.4709 -0.0016 22 7 4.6655 -3.4794 -0.0016 23 7 2.1554 -1.1460 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6450 2.1367 0.0008 28 1 4.2242 2.7813 -2.0514 29 1 2.8263 3.3722 -1.1202 30 1 4.1914 5.1251 -0.0939 31 1 4.3903 5.2157 -1.8622 32 1 5.3273 7.8538 -2.0258 33 1 6.2874 3.8574 1.1935 34 1 7.5667 3.2909 0.0903 35 1 5.9954 1.4554 0.8261 36 1 6.0353 1.6853 -0.9387 37 1 5.3185 -0.0759 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308281511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:46 Heat of formation + Delta-G solvation = 104.606449 kcal Electronic energy + Delta-G solvation = -20277.257742 eV Core-core repulsion = 17248.809847 eV Total energy + Delta-G solvation = -3028.447895 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.84951 -38.42482 -36.66552 -35.04141 -33.05680 -32.04128 -30.64223 -30.06070 -28.04775 -26.55497 -24.93173 -23.54065 -22.53425 -21.32089 -19.50513 -18.91473 -17.05262 -16.65415 -16.43527 -15.27421 -15.08548 -14.72891 -14.39143 -14.01299 -13.86425 -13.60656 -13.58038 -13.35220 -13.26121 -12.98936 -12.93307 -12.39271 -12.16177 -12.01135 -11.60285 -11.26455 -10.86163 -10.84414 -10.59754 -10.40875 -10.13185 -9.92539 -9.89565 -9.75534 -9.09206 -8.64903 -8.07507 -6.86320 -5.92538 -3.34865 0.52652 1.14576 2.41189 2.72966 3.30320 3.37990 3.38322 3.38944 3.71609 3.90401 4.36342 4.38959 4.84250 4.90835 5.03302 5.15735 5.22312 5.26696 5.35803 5.45632 5.55183 5.56503 5.72676 5.79327 5.85685 5.87059 5.95248 6.02037 6.26740 6.36942 6.39562 6.69657 6.93965 7.23129 7.26089 7.28643 7.44929 7.67100 7.73708 8.27553 9.05593 9.67952 10.24750 11.16732 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.004362 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.254065 B = 6417.044096 C = 7038.174391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.155 3.845 3 C -0.175 4.175 4 C 0.175 3.825 5 N -0.476 5.476 6 C 0.038 3.962 7 C 0.174 3.826 8 N -0.595 5.595 9 C -0.258 4.258 10 H 0.069 0.931 11 C 0.005 3.995 12 N -0.903 5.903 13 Si 0.904 3.096 14 H -0.287 1.287 15 H -0.290 1.290 16 H -0.279 1.279 17 C 0.147 3.853 18 C 0.032 3.968 19 C -0.185 4.185 20 C 0.214 3.786 21 C 0.275 3.725 22 N -0.400 5.400 23 N -0.484 5.484 24 H 0.080 0.920 25 H 0.079 0.921 26 H 0.078 0.922 27 H 0.145 0.855 28 H 0.044 0.956 29 H 0.074 0.926 30 H 0.031 0.969 31 H 0.097 0.903 32 H 0.256 0.744 33 H 0.029 0.971 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.049 0.951 37 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.154 -9.687 2.849 12.978 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.016 3.984 3 C -0.199 4.199 4 C 0.066 3.934 5 N -0.188 5.188 6 C -0.088 4.088 7 C 0.048 3.952 8 N -0.318 5.318 9 C -0.387 4.387 10 H 0.086 0.914 11 C -0.194 4.194 12 N -0.547 5.547 13 Si 0.734 3.266 14 H -0.214 1.214 15 H -0.216 1.216 16 H -0.204 1.204 17 C 0.020 3.980 18 C -0.096 4.096 19 C -0.211 4.211 20 C 0.076 3.924 21 C -0.042 4.042 22 N -0.077 5.077 23 N -0.198 5.198 24 H 0.099 0.901 25 H 0.098 0.902 26 H 0.097 0.903 27 H 0.163 0.837 28 H 0.062 0.938 29 H 0.092 0.908 30 H 0.049 0.951 31 H 0.115 0.885 32 H 0.066 0.934 33 H 0.047 0.953 34 H 0.082 0.918 35 H 0.092 0.908 36 H 0.067 0.933 37 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -7.907 -11.449 3.203 14.278 hybrid contribution 0.948 1.238 -1.186 1.959 sum -6.959 -10.210 2.017 12.520 Atomic orbital electron populations 1.20725 0.88109 1.03733 1.03384 1.20986 0.96847 0.86963 0.93648 1.21845 0.92945 0.99905 1.05180 1.19423 0.93098 0.89756 0.91122 1.58763 1.06813 1.11042 1.42217 1.23193 1.00211 0.96772 0.88642 1.20960 0.82623 0.89492 1.02150 1.44134 1.01767 1.47770 1.38108 1.19208 0.97947 0.98557 1.22965 0.91368 1.25035 0.98628 0.95439 1.00319 1.70009 1.30303 1.13507 1.40852 0.86262 0.79722 0.78057 0.82566 1.21361 1.21643 1.20382 1.21008 0.96288 0.87848 0.92886 1.22977 0.85191 1.00848 1.00547 1.22143 1.01761 0.91082 1.06146 1.16030 0.89141 0.86318 1.00946 1.25076 0.93124 0.92030 0.93977 1.81220 1.08937 1.09907 1.07637 1.67342 1.07283 1.30149 1.15037 0.90101 0.90235 0.90349 0.83712 0.93799 0.90815 0.95063 0.88504 0.93423 0.95267 0.91767 0.90766 0.93294 0.83570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.80 10.16 36.00 0.37 -0.43 16 2 C 0.15 1.75 6.78 -82.67 -0.56 1.19 16 3 C -0.18 -2.08 8.86 -39.15 -0.35 -2.42 16 4 C 0.17 2.38 5.66 -83.64 -0.47 1.91 16 5 N -0.48 -7.46 4.67 -170.65 -0.80 -8.25 16 6 C 0.04 0.64 5.43 -3.70 -0.02 0.62 16 7 C 0.17 3.78 5.42 -3.61 -0.02 3.76 16 8 N -0.59 -13.82 3.04 -172.02 -0.52 -14.34 16 9 C -0.26 -6.65 9.63 -15.06 -0.15 -6.79 16 10 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 11 C 0.00 0.12 4.93 -17.43 -0.09 0.04 16 12 N -0.90 -24.74 11.15 55.49 0.62 -24.12 16 13 Si 0.90 20.68 29.59 -169.99 -5.03 15.66 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 15 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 16 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 17 C 0.15 2.80 6.69 -3.60 -0.02 2.78 16 18 C 0.03 0.51 4.32 -3.70 -0.02 0.49 16 19 C -0.18 -2.36 8.57 -38.82 -0.33 -2.69 16 20 C 0.21 2.80 6.58 -85.13 -0.56 2.24 16 21 C 0.28 3.75 15.53 -22.47 -0.35 3.40 16 22 N -0.40 -5.97 18.54 41.84 0.78 -5.19 16 23 N -0.48 -6.34 10.18 -7.50 -0.08 -6.42 16 24 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 25 H 0.08 0.49 8.07 -51.93 -0.42 0.07 16 26 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.15 1.51 7.21 -52.49 -0.38 1.13 16 28 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 1.07 6.71 -51.93 -0.35 0.72 16 30 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 31 H 0.10 2.35 6.11 -51.93 -0.32 2.03 16 32 H 0.26 6.80 8.31 -40.82 -0.34 6.46 16 33 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 34 H 0.06 1.18 7.96 -51.93 -0.41 0.76 16 35 H 0.07 0.98 6.92 -51.93 -0.36 0.62 16 36 H 0.05 0.77 7.85 -51.93 -0.41 0.37 16 37 H 0.15 1.71 5.96 -52.48 -0.31 1.40 16 LS Contribution 310.75 15.07 4.68 4.68 Total: -1.00 -28.73 310.75 -7.53 -36.27 By element: Atomic # 1 Polarization: 2.27 SS G_CDS: -4.62 Total: -2.35 kcal Atomic # 6 Polarization: 6.64 SS G_CDS: -2.57 Total: 4.07 kcal Atomic # 7 Polarization: -58.32 SS G_CDS: 0.00 Total: -58.32 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.03 Total: 15.66 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.73 -7.53 -36.27 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308281511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.873 kcal (2) G-P(sol) polarization free energy of solvation -28.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.266 kcal (6) G-S(sol) free energy of system = (1) + (5) 104.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds