Wall clock time and date at job start Mon Mar 30 2020 04:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38197 * 119.49792 * 2 1 4 4 C 1.39441 * 119.29286 * 179.75171 * 3 2 1 5 5 N 1.39197 * 120.82490 * 180.30082 * 4 3 2 6 6 C 1.46898 * 110.99941 * 304.52083 * 5 4 3 7 7 C 1.53240 * 109.33901 * 172.74775 * 6 5 4 8 8 N 1.47073 * 108.52270 * 53.83074 * 7 6 5 9 9 C 1.36943 * 120.88278 * 128.83826 * 8 7 6 10 10 H 1.07999 * 119.99792 * 206.62488 * 9 8 7 11 11 C 1.38809 * 119.99680 * 26.61915 * 9 8 7 12 12 N 1.31622 * 119.99985 * 17.04855 * 11 9 8 13 13 Si 1.86803 * 119.99982 * 197.04050 * 11 9 8 14 14 H 1.48497 * 109.46867 * 90.00405 * 13 11 9 15 15 H 1.48502 * 109.47257 * 210.00837 * 13 11 9 16 16 H 1.48497 * 109.46981 * 330.00706 * 13 11 9 17 17 C 1.47081 * 118.23888 * 308.81468 * 8 7 6 18 18 C 1.46900 * 111.00112 * 180.21849 * 5 4 3 19 19 C 1.39389 * 118.35283 * 0.51484 * 4 3 2 20 20 C 1.39147 * 118.95354 * 359.51007 * 19 4 3 21 21 C 1.43198 * 119.70308 * 180.25468 * 20 19 4 22 22 N 4.69921 * 132.23225 * 180.02562 * 2 1 3 23 23 N 1.31681 * 119.50396 * 180.02562 * 2 1 3 24 24 H 1.09000 * 109.46891 * 269.97100 * 1 2 3 25 25 H 1.08993 * 109.47500 * 29.97545 * 1 2 3 26 26 H 1.08997 * 109.47108 * 149.97712 * 1 2 3 27 27 H 1.07999 * 120.35237 * 0.05003 * 3 2 1 28 28 H 1.08998 * 109.49131 * 292.70550 * 6 5 4 29 29 H 1.09001 * 109.48947 * 52.78574 * 6 5 4 30 30 H 1.08997 * 109.62555 * 294.11541 * 7 6 5 31 31 H 1.09004 * 109.78523 * 173.63711 * 7 6 5 32 32 H 0.97001 * 119.99598 * 179.97438 * 12 11 9 33 33 H 1.09007 * 109.62604 * 291.47745 * 17 8 7 34 34 H 1.08996 * 109.79317 * 170.99091 * 17 8 7 35 35 H 1.08994 * 109.49366 * 307.21580 * 18 5 4 36 36 H 1.09004 * 109.48986 * 67.26584 * 18 5 4 37 37 H 1.08004 * 120.52486 * 179.78668 * 19 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1874 1.2028 0.0000 4 6 3.5818 1.1978 0.0053 5 7 4.2993 2.3906 0.0117 6 6 3.9090 3.2459 -1.1171 7 6 4.5831 4.6145 -0.9736 8 7 6.0314 4.4083 -0.8214 9 6 6.9243 5.0836 -1.6101 10 1 7.8951 4.6568 -1.8140 11 6 6.5814 6.3167 -2.1474 12 7 5.5667 6.9919 -1.6505 13 14 7.5601 7.0179 -3.5756 14 1 6.9563 6.5705 -4.8564 15 1 7.5386 8.5013 -3.5096 16 1 8.9636 6.5393 -3.4962 17 6 6.4953 3.4579 0.2008 18 6 5.7459 2.1348 0.0112 19 6 4.2394 -0.0312 -0.0006 20 6 3.4836 -1.1995 -0.0011 21 6 4.1426 -2.4709 -0.0016 22 7 4.6655 -3.4794 -0.0016 23 7 2.1554 -1.1460 -0.0005 24 1 -0.3633 -0.0005 1.0277 25 1 -0.3634 0.8901 -0.5134 26 1 -0.3633 -0.8897 -0.5142 27 1 1.6450 2.1367 0.0008 28 1 4.2242 2.7813 -2.0514 29 1 2.8263 3.3722 -1.1202 30 1 4.1914 5.1251 -0.0939 31 1 4.3903 5.2157 -1.8622 32 1 5.3273 7.8538 -2.0258 33 1 6.2874 3.8574 1.1935 34 1 7.5667 3.2909 0.0903 35 1 5.9954 1.4554 0.8261 36 1 6.0353 1.6853 -0.9387 37 1 5.3185 -0.0759 -0.0003 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308281511.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:56:45 Heat of formation + Delta-G solvation = 87.105370 kcal Electronic energy + Delta-G solvation = -20278.016646 eV Core-core repulsion = 17248.809847 eV Total energy + Delta-G solvation = -3029.206799 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.89304 -39.70348 -37.77063 -36.60561 -33.98482 -33.68973 -32.01318 -31.50438 -28.93194 -28.10348 -26.06958 -25.15223 -23.91008 -22.48476 -20.94850 -20.04474 -18.69341 -17.70033 -17.63929 -16.81988 -16.22038 -16.14092 -15.62544 -15.35643 -15.25170 -15.07298 -14.75279 -14.56692 -14.40448 -14.27857 -14.03737 -13.24833 -13.20951 -13.03576 -12.96449 -12.86518 -12.58408 -12.44010 -12.18888 -12.02100 -11.65880 -11.57836 -11.35180 -10.74680 -10.58583 -10.01316 -9.25773 -8.72676 -7.89350 -5.33449 -0.46070 0.15548 1.35233 1.48491 1.50539 1.58323 1.70242 2.34446 2.50422 2.62283 2.85655 3.27443 3.49504 3.61748 3.86622 3.93121 4.05975 4.11691 4.25741 4.36983 4.47503 4.50063 4.56677 4.63487 4.73634 4.87415 4.91972 4.94512 5.04363 5.16444 5.19214 5.32542 5.51875 5.62375 5.67241 5.89943 6.12245 6.18303 6.36101 6.79217 7.12722 7.81617 8.34346 9.17889 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026402 B = 0.004362 C = 0.003977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.254065 B = 6417.044096 C = 7038.174391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.101 4.101 2 C 0.156 3.844 3 C -0.167 4.167 4 C 0.159 3.841 5 N -0.483 5.483 6 C 0.055 3.945 7 C 0.181 3.819 8 N -0.614 5.614 9 C -0.265 4.265 10 H 0.069 0.931 11 C -0.045 4.045 12 N -0.932 5.932 13 Si 0.964 3.036 14 H -0.285 1.285 15 H -0.296 1.296 16 H -0.271 1.271 17 C 0.143 3.857 18 C 0.043 3.957 19 C -0.178 4.178 20 C 0.207 3.793 21 C 0.290 3.710 22 N -0.427 5.427 23 N -0.496 5.496 24 H 0.095 0.905 25 H 0.099 0.901 26 H 0.080 0.920 27 H 0.162 0.838 28 H 0.038 0.962 29 H 0.100 0.900 30 H 0.007 0.993 31 H 0.066 0.934 32 H 0.251 0.749 33 H 0.020 0.980 34 H 0.068 0.932 35 H 0.103 0.897 36 H 0.049 0.951 37 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.059 -10.865 2.831 14.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.017 3.983 3 C -0.190 4.190 4 C 0.052 3.948 5 N -0.197 5.197 6 C -0.072 4.072 7 C 0.055 3.945 8 N -0.338 5.338 9 C -0.395 4.395 10 H 0.086 0.914 11 C -0.241 4.241 12 N -0.578 5.578 13 Si 0.793 3.207 14 H -0.212 1.212 15 H -0.223 1.223 16 H -0.196 1.196 17 C 0.017 3.983 18 C -0.085 4.085 19 C -0.204 4.204 20 C 0.069 3.931 21 C -0.027 4.027 22 N -0.104 5.104 23 N -0.210 5.210 24 H 0.113 0.887 25 H 0.118 0.882 26 H 0.099 0.901 27 H 0.180 0.820 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.025 0.975 31 H 0.084 0.916 32 H 0.060 0.940 33 H 0.038 0.962 34 H 0.087 0.913 35 H 0.121 0.879 36 H 0.067 0.933 37 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -8.810 -12.678 3.201 15.767 hybrid contribution 1.176 1.561 -1.119 2.252 sum -7.634 -11.117 2.082 13.646 Atomic orbital electron populations 1.20858 0.85500 1.04876 1.04607 1.21521 0.98408 0.86115 0.92238 1.22091 0.92317 1.00930 1.03680 1.19412 0.93740 0.88965 0.92713 1.58707 1.06840 1.12154 1.41951 1.22853 1.01118 0.94131 0.89052 1.20710 0.82484 0.91838 0.99486 1.44411 1.02135 1.48211 1.39041 1.19518 0.98342 0.98660 1.22998 0.91367 1.25708 0.99840 0.95975 1.02534 1.70152 1.31900 1.13672 1.42113 0.85318 0.78811 0.76791 0.79815 1.21163 1.22272 1.19583 1.21137 0.97203 0.88664 0.91322 1.22815 0.85084 0.98890 1.01697 1.22177 1.02254 0.90651 1.05345 1.15995 0.89346 0.85984 1.01783 1.25142 0.92505 0.91881 0.93151 1.81234 1.09758 1.10665 1.08694 1.67392 1.07293 1.31204 1.15115 0.88696 0.88204 0.90144 0.82026 0.94387 0.88138 0.97534 0.91600 0.93951 0.96165 0.91346 0.87882 0.93288 0.82634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.22 10.16 71.23 0.72 -0.50 16 2 C 0.16 3.05 6.78 42.57 0.29 3.34 16 3 C -0.17 -3.43 8.86 22.55 0.20 -3.23 16 4 C 0.16 3.92 5.66 38.54 0.22 4.14 16 5 N -0.48 -14.21 4.67 -693.82 -3.24 -17.45 16 6 C 0.05 1.78 5.43 86.38 0.47 2.25 16 7 C 0.18 7.97 5.42 86.35 0.47 8.44 16 8 N -0.61 -28.80 3.04 -698.14 -2.12 -30.92 16 9 C -0.27 -13.82 9.63 84.03 0.81 -13.01 16 10 H 0.07 3.47 7.88 -2.91 -0.02 3.45 16 11 C -0.04 -2.38 4.93 84.86 0.42 -1.96 16 12 N -0.93 -52.41 11.15 21.65 0.24 -52.17 16 13 Si 0.96 42.95 29.59 68.60 2.03 44.98 16 14 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 15 H -0.30 -13.37 7.11 99.48 0.71 -12.66 16 16 H -0.27 -11.60 7.11 99.48 0.71 -10.90 16 17 C 0.14 5.39 6.69 86.35 0.58 5.97 16 18 C 0.04 1.26 4.32 86.38 0.37 1.64 16 19 C -0.18 -4.11 8.57 22.77 0.20 -3.91 16 20 C 0.21 4.96 6.58 40.44 0.27 5.23 16 21 C 0.29 7.47 15.53 88.33 1.37 8.85 16 22 N -0.43 -12.24 18.54 19.00 0.35 -11.89 16 23 N -0.50 -11.76 10.18 -177.63 -1.81 -13.57 16 24 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 25 H 0.10 0.83 8.07 -2.39 -0.02 0.81 16 26 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.16 2.76 7.21 -2.91 -0.02 2.74 16 28 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.10 2.70 6.71 -2.39 -0.02 2.68 16 30 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.07 3.30 6.11 -2.39 -0.01 3.28 16 32 H 0.25 13.72 8.31 -92.71 -0.77 12.95 16 33 H 0.02 0.80 8.14 -2.38 -0.02 0.78 16 34 H 0.07 2.47 7.96 -2.39 -0.02 2.45 16 35 H 0.10 2.45 6.92 -2.39 -0.02 2.43 16 36 H 0.05 1.45 7.85 -2.38 -0.02 1.44 16 37 H 0.16 3.23 5.96 -2.91 -0.02 3.21 16 Total: -1.00 -62.39 310.75 2.92 -59.47 By element: Atomic # 1 Polarization: 3.24 SS G_CDS: 1.09 Total: 4.33 kcal Atomic # 6 Polarization: 10.84 SS G_CDS: 6.38 Total: 17.22 kcal Atomic # 7 Polarization: -119.42 SS G_CDS: -6.58 Total: -126.00 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.98 kcal Total: -62.39 2.92 -59.47 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308281511.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 146.575 kcal (2) G-P(sol) polarization free energy of solvation -62.389 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.186 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.470 kcal (6) G-S(sol) free energy of system = (1) + (5) 87.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds