Wall clock time and date at job start Mon Mar 30 2020 05:32:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47274 * 2 1 4 4 N 1.46900 * 109.47227 * 239.99905 * 2 1 3 5 5 C 1.46902 * 111.00231 * 85.00093 * 4 2 1 6 6 H 1.09005 * 109.46162 * 33.79325 * 5 4 2 7 7 C 1.54015 * 109.73020 * 154.07687 * 5 4 2 8 8 C 1.55132 * 106.98467 * 167.04375 * 7 5 4 9 9 S 1.83458 * 102.20607 * 317.93741 * 8 7 5 10 10 C 1.54276 * 109.60833 * 273.54991 * 5 4 2 11 11 C 1.50702 * 109.46981 * 120.00080 * 2 1 3 12 12 O 1.21278 * 120.00131 * 120.00336 * 11 2 1 13 13 N 1.34778 * 120.00195 * 299.99909 * 11 2 1 14 14 C 1.46509 * 119.99499 * 359.97438 * 13 11 2 15 15 C 1.46498 * 120.00375 * 180.02562 * 13 11 2 16 16 C 1.50698 * 109.47092 * 90.00010 * 15 13 11 17 17 H 1.08002 * 120.00091 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99602 * 180.02562 * 16 15 13 19 19 N 1.31522 * 119.99926 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00226 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47134 * 89.99749 * 20 18 16 22 22 H 1.48499 * 109.46756 * 210.00147 * 20 18 16 23 23 H 1.48503 * 109.46958 * 329.99905 * 20 18 16 24 24 H 1.09000 * 109.46819 * 300.00141 * 1 2 3 25 25 H 1.08998 * 109.46515 * 60.00175 * 1 2 3 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.00897 * 110.99807 * 321.04679 * 4 2 1 28 28 H 1.08998 * 109.88589 * 47.68283 * 7 5 4 29 29 H 1.08995 * 110.00846 * 286.47381 * 7 5 4 30 30 H 1.09004 * 110.85654 * 199.75602 * 8 7 5 31 31 H 1.09008 * 110.86096 * 76.11431 * 8 7 5 32 32 H 1.09002 * 110.40402 * 93.33036 * 10 5 4 33 33 H 1.08998 * 110.39950 * 331.02932 * 10 5 4 34 34 H 1.09009 * 109.46560 * 90.00285 * 14 13 11 35 35 H 1.09000 * 109.47051 * 209.99601 * 14 13 11 36 36 H 1.08999 * 109.47317 * 330.00335 * 14 13 11 37 37 H 1.09005 * 109.46950 * 209.99941 * 15 13 11 38 38 H 1.09000 * 109.46801 * 329.99915 * 15 13 11 39 39 H 0.96991 * 119.99686 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 1 2.3440 1.2224 -2.0003 7 6 3.1442 -0.2707 -3.3477 8 6 2.9334 0.5265 -4.6617 9 16 1.1057 0.5364 -4.8204 10 6 0.7117 0.2617 -3.0536 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7068 -0.2500 2.4546 14 6 0.8649 0.9415 2.5890 15 6 2.1955 -0.9403 3.6508 16 6 3.5228 -0.3562 4.0607 17 1 3.9590 0.4484 3.4873 18 6 4.1809 -0.8498 5.1672 19 7 5.3396 -0.3404 5.5247 20 14 3.4268 -2.2419 6.1586 21 1 3.8868 -3.5441 5.6125 22 1 3.8480 -2.1236 7.5777 23 1 1.9463 -2.1647 6.0735 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4496 -1.4979 -1.4100 28 1 3.0117 -1.3365 -3.5336 29 1 4.1432 -0.0829 -2.9545 30 1 3.3935 0.0125 -5.5056 31 1 3.3201 1.5413 -4.5663 32 1 0.1081 1.0827 -2.6667 33 1 0.1901 -0.6865 -2.9236 34 1 -0.1832 0.6439 2.6221 35 1 1.1227 1.4667 3.5086 36 1 1.0288 1.6003 1.7361 37 1 1.4775 -0.8150 4.4614 38 1 2.3169 -2.0015 3.4337 39 1 5.8023 -0.6874 6.3033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309536043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:41 Heat of formation + Delta-G solvation = -22.258887 kcal Electronic energy + Delta-G solvation = -19397.666999 eV Core-core repulsion = 16466.869010 eV Total energy + Delta-G solvation = -2930.797989 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -39.62557 -37.65093 -34.92993 -34.06864 -32.48913 -30.25816 -28.70225 -27.98716 -26.18029 -24.40281 -23.78958 -21.66552 -21.02105 -18.59540 -17.12702 -16.92199 -16.46220 -16.09082 -15.39692 -15.21799 -14.64987 -14.43576 -13.88176 -13.67139 -13.52354 -13.30370 -12.77982 -12.56679 -12.44305 -12.34993 -12.21046 -12.03412 -11.81956 -11.62190 -11.48229 -11.28143 -11.07877 -10.87656 -10.52052 -10.26294 -10.14341 -9.53930 -9.03246 -8.58653 -8.39987 -7.95054 -7.68530 -6.08466 -4.07153 1.55342 2.11369 3.28980 3.34741 3.36652 3.36908 3.54243 4.11265 4.30277 4.39702 4.61319 4.68666 4.79055 4.88159 4.91861 5.02204 5.08244 5.23174 5.24451 5.31785 5.43460 5.45168 5.59441 5.64848 5.77701 5.79238 5.87121 5.91471 6.16794 6.62700 6.80807 6.96629 7.21825 7.35082 7.61473 8.26421 8.47603 8.94112 9.03558 9.51916 11.05039 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.003919 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.814081 B = 7143.391150 C = 7482.202765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.068 3.932 3 H 0.100 0.900 4 N -0.650 5.650 5 C 0.085 3.915 6 H 0.091 0.909 7 C -0.117 4.117 8 C -0.070 4.070 9 S -0.301 6.301 10 C -0.102 4.102 11 C 0.512 3.488 12 O -0.520 6.520 13 N -0.600 5.600 14 C 0.082 3.918 15 C 0.217 3.783 16 C -0.528 4.528 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.898 5.898 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.266 1.266 24 H 0.082 0.918 25 H 0.062 0.938 26 H 0.062 0.938 27 H 0.350 0.650 28 H 0.083 0.917 29 H 0.094 0.906 30 H 0.104 0.896 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.047 0.953 35 H 0.075 0.925 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.295 3.751 -16.276 20.163 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.045 4.045 3 H 0.118 0.882 4 N -0.281 5.281 5 C -0.027 4.027 6 H 0.109 0.891 7 C -0.156 4.156 8 C -0.218 4.218 9 S -0.077 6.077 10 C -0.252 4.252 11 C 0.297 3.703 12 O -0.394 6.394 13 N -0.333 5.333 14 C -0.062 4.062 15 C 0.096 3.904 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.101 0.899 25 H 0.081 0.919 26 H 0.081 0.919 27 H 0.171 0.829 28 H 0.102 0.898 29 H 0.112 0.888 30 H 0.122 0.878 31 H 0.110 0.890 32 H 0.114 0.886 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.802 3.398 -16.945 20.380 hybrid contribution -0.537 -0.563 1.416 1.616 sum -11.339 2.835 -15.529 19.436 Atomic orbital electron populations 1.22849 0.95499 1.03292 1.03795 1.21577 0.93839 0.98635 0.90463 0.88201 1.60085 1.58153 1.08319 1.01492 1.22570 0.91168 0.97710 0.91229 0.89092 1.22503 1.00466 1.00911 0.91705 1.24255 0.92302 1.03985 1.01258 1.87577 1.09648 1.96248 1.14182 1.25061 1.01683 1.05505 0.92943 1.20121 0.81075 0.85302 0.83816 1.90670 1.36510 1.26352 1.85897 1.47808 1.50354 1.28458 1.06701 1.21794 0.93505 0.88056 1.02830 1.19639 0.95251 0.93694 0.81772 1.21338 1.03133 1.20269 1.11948 0.90813 1.24866 0.94634 0.96467 0.97080 1.69901 1.14789 1.42365 1.26586 0.86842 0.79978 0.83312 0.79488 1.19890 1.21086 1.19110 0.89924 0.91883 0.91898 0.82891 0.89838 0.88803 0.87801 0.89007 0.88580 0.88838 0.93463 0.90641 0.92226 0.95314 0.94611 0.92576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.00 8.57 37.16 0.32 -1.68 16 2 C 0.07 0.93 2.19 -68.86 -0.15 0.78 16 3 H 0.10 1.27 6.67 -51.93 -0.35 0.93 16 4 N -0.65 -8.40 5.56 -99.70 -0.55 -8.95 16 5 C 0.09 0.86 2.90 -66.51 -0.19 0.66 16 6 H 0.09 0.92 7.40 -51.93 -0.38 0.53 16 7 C -0.12 -1.12 6.09 -25.07 -0.15 -1.27 16 8 C -0.07 -0.58 7.38 38.29 0.28 -0.30 16 9 S -0.30 -3.06 23.26 -107.50 -2.50 -5.56 16 10 C -0.10 -0.91 5.48 37.83 0.21 -0.70 16 11 C 0.51 10.13 7.14 -10.98 -0.08 10.05 16 12 O -0.52 -12.76 16.01 5.56 0.09 -12.67 16 13 N -0.60 -12.00 2.86 -182.94 -0.52 -12.52 16 14 C 0.08 1.19 8.80 59.85 0.53 1.72 16 15 C 0.22 5.28 4.23 -5.20 -0.02 5.26 16 16 C -0.53 -15.20 9.94 -34.44 -0.34 -15.55 16 17 H 0.07 2.33 8.06 -52.49 -0.42 1.91 16 18 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 19 N -0.90 -27.77 13.96 55.43 0.77 -26.99 16 20 Si 0.88 21.58 27.47 -169.99 -4.67 16.91 16 21 H -0.27 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 23 H -0.27 -6.15 6.54 56.52 0.37 -5.78 16 24 H 0.08 0.81 4.53 -51.93 -0.24 0.57 16 25 H 0.06 0.51 5.64 -51.93 -0.29 0.22 16 26 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 27 H 0.35 4.29 7.87 -39.29 -0.31 3.98 16 28 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 30 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.09 0.69 8.14 -51.92 -0.42 0.27 16 32 H 0.10 0.78 7.01 -51.93 -0.36 0.42 16 33 H 0.09 0.82 7.59 -51.93 -0.39 0.42 16 34 H 0.05 0.56 6.95 -51.92 -0.36 0.20 16 35 H 0.07 1.16 8.07 -51.93 -0.42 0.74 16 36 H 0.06 0.71 6.01 -51.93 -0.31 0.40 16 37 H 0.03 0.66 7.13 -51.93 -0.37 0.29 16 38 H 0.04 0.93 6.85 -51.93 -0.36 0.58 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 316.87 15.07 4.78 4.78 Total: -1.00 -34.26 316.87 -8.16 -42.42 By element: Atomic # 1 Polarization: 7.46 SS G_CDS: -5.85 Total: 1.62 kcal Atomic # 6 Polarization: 0.67 SS G_CDS: 0.30 Total: 0.97 kcal Atomic # 7 Polarization: -48.16 SS G_CDS: -0.30 Total: -48.47 kcal Atomic # 8 Polarization: -12.76 SS G_CDS: 0.09 Total: -12.67 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.67 Total: 16.91 kcal Atomic # 16 Polarization: -3.06 SS G_CDS: -2.50 Total: -5.56 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -34.26 -8.16 -42.42 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.160 kcal (2) G-P(sol) polarization free energy of solvation -34.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.419 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds