Wall clock time and date at job start Mon Mar 30 2020 05:32:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47274 * 2 1 4 4 N 1.46900 * 109.47227 * 239.99905 * 2 1 3 5 5 C 1.46902 * 111.00231 * 85.00093 * 4 2 1 6 6 H 1.09005 * 109.46162 * 33.79325 * 5 4 2 7 7 C 1.54015 * 109.73020 * 154.07687 * 5 4 2 8 8 C 1.55132 * 106.98467 * 167.04375 * 7 5 4 9 9 S 1.83458 * 102.20607 * 317.93741 * 8 7 5 10 10 C 1.54276 * 109.60833 * 273.54991 * 5 4 2 11 11 C 1.50702 * 109.46981 * 120.00080 * 2 1 3 12 12 O 1.21278 * 120.00131 * 120.00336 * 11 2 1 13 13 N 1.34778 * 120.00195 * 299.99909 * 11 2 1 14 14 C 1.46509 * 119.99499 * 359.97438 * 13 11 2 15 15 C 1.46498 * 120.00375 * 180.02562 * 13 11 2 16 16 C 1.50698 * 109.47092 * 90.00010 * 15 13 11 17 17 H 1.08002 * 120.00091 * 359.97438 * 16 15 13 18 18 C 1.37878 * 119.99602 * 180.02562 * 16 15 13 19 19 N 1.31522 * 119.99926 * 179.97438 * 18 16 15 20 20 Si 1.86802 * 120.00226 * 359.97438 * 18 16 15 21 21 H 1.48504 * 109.47134 * 89.99749 * 20 18 16 22 22 H 1.48499 * 109.46756 * 210.00147 * 20 18 16 23 23 H 1.48503 * 109.46958 * 329.99905 * 20 18 16 24 24 H 1.09000 * 109.46819 * 300.00141 * 1 2 3 25 25 H 1.08998 * 109.46515 * 60.00175 * 1 2 3 26 26 H 1.09000 * 109.46872 * 179.97438 * 1 2 3 27 27 H 1.00897 * 110.99807 * 321.04679 * 4 2 1 28 28 H 1.08998 * 109.88589 * 47.68283 * 7 5 4 29 29 H 1.08995 * 110.00846 * 286.47381 * 7 5 4 30 30 H 1.09004 * 110.85654 * 199.75602 * 8 7 5 31 31 H 1.09008 * 110.86096 * 76.11431 * 8 7 5 32 32 H 1.09002 * 110.40402 * 93.33036 * 10 5 4 33 33 H 1.08998 * 110.39950 * 331.02932 * 10 5 4 34 34 H 1.09009 * 109.46560 * 90.00285 * 14 13 11 35 35 H 1.09000 * 109.47051 * 209.99601 * 14 13 11 36 36 H 1.08999 * 109.47317 * 330.00335 * 14 13 11 37 37 H 1.09005 * 109.46950 * 209.99941 * 15 13 11 38 38 H 1.09000 * 109.46801 * 329.99915 * 15 13 11 39 39 H 0.96991 * 119.99686 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0197 -0.6925 -1.1994 5 6 2.0826 0.2225 -2.3469 6 1 2.3440 1.2224 -2.0003 7 6 3.1442 -0.2707 -3.3477 8 6 2.9334 0.5265 -4.6617 9 16 1.1057 0.5364 -4.8204 10 6 0.7117 0.2617 -3.0536 11 6 2.0323 -0.7104 1.2305 12 8 2.7296 -1.6965 1.1192 13 7 1.7068 -0.2500 2.4546 14 6 0.8649 0.9415 2.5890 15 6 2.1955 -0.9403 3.6508 16 6 3.5228 -0.3562 4.0607 17 1 3.9590 0.4484 3.4873 18 6 4.1809 -0.8498 5.1672 19 7 5.3396 -0.3404 5.5247 20 14 3.4268 -2.2419 6.1586 21 1 3.8868 -3.5441 5.6125 22 1 3.8480 -2.1236 7.5777 23 1 1.9463 -2.1647 6.0735 24 1 -0.3633 0.5139 0.8900 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 1.4496 -1.4979 -1.4100 28 1 3.0117 -1.3365 -3.5336 29 1 4.1432 -0.0829 -2.9545 30 1 3.3935 0.0125 -5.5056 31 1 3.3201 1.5413 -4.5663 32 1 0.1081 1.0827 -2.6667 33 1 0.1901 -0.6865 -2.9236 34 1 -0.1832 0.6439 2.6221 35 1 1.1227 1.4667 3.5086 36 1 1.0288 1.6003 1.7361 37 1 1.4775 -0.8150 4.4614 38 1 2.3169 -2.0015 3.4337 39 1 5.8023 -0.6874 6.3033 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309536043.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:32:40 Heat of formation + Delta-G solvation = -47.411156 kcal Electronic energy + Delta-G solvation = -19398.757684 eV Core-core repulsion = 16466.869010 eV Total energy + Delta-G solvation = -2931.888673 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.99380 -38.70920 -36.59172 -35.18877 -34.47370 -31.41102 -29.97409 -29.16791 -27.53209 -25.45848 -25.05796 -23.23778 -21.84407 -20.03140 -19.13217 -18.12119 -17.59999 -17.22862 -16.60055 -16.51002 -16.10953 -15.71747 -15.19972 -14.72375 -14.55890 -14.51597 -14.33537 -13.66237 -13.65087 -13.55977 -13.38596 -13.16498 -12.89895 -12.79730 -12.70385 -12.48990 -12.45141 -12.28425 -11.98658 -11.85099 -11.73818 -11.03257 -10.82942 -10.50321 -9.44943 -9.30091 -8.71784 -8.33815 -6.38782 0.83529 1.32615 1.37186 1.39735 1.45330 1.87775 2.24826 2.31315 3.00728 3.07778 3.51359 3.69161 3.83769 3.94667 4.02759 4.11974 4.14040 4.21409 4.37684 4.54442 4.55271 4.62211 4.72355 4.77149 4.78552 4.86751 4.93851 4.98081 5.00830 5.08998 5.22718 5.46997 5.63354 5.88393 6.25417 6.28655 6.62708 6.77496 7.22748 7.51548 8.83329 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.035760 B = 0.003919 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 782.814081 B = 7143.391150 C = 7482.202765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.083 3.917 3 H 0.113 0.887 4 N -0.671 5.671 5 C 0.089 3.911 6 H 0.095 0.905 7 C -0.117 4.117 8 C -0.057 4.057 9 S -0.335 6.335 10 C -0.088 4.088 11 C 0.499 3.501 12 O -0.580 6.580 13 N -0.608 5.608 14 C 0.074 3.926 15 C 0.225 3.775 16 C -0.536 4.536 17 H 0.027 0.973 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.949 3.051 21 H -0.278 1.278 22 H -0.275 1.275 23 H -0.237 1.237 24 H 0.092 0.908 25 H 0.091 0.909 26 H 0.058 0.942 27 H 0.352 0.648 28 H 0.075 0.925 29 H 0.086 0.914 30 H 0.114 0.886 31 H 0.103 0.897 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.085 0.915 35 H 0.063 0.937 36 H 0.089 0.911 37 H 0.050 0.950 38 H 0.016 0.984 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.900 4.136 -16.796 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C -0.031 4.031 3 H 0.130 0.870 4 N -0.303 5.303 5 C -0.022 4.022 6 H 0.113 0.887 7 C -0.156 4.156 8 C -0.205 4.205 9 S -0.111 6.111 10 C -0.238 4.238 11 C 0.287 3.713 12 O -0.460 6.460 13 N -0.341 5.341 14 C -0.067 4.067 15 C 0.102 3.898 16 C -0.575 4.575 17 H 0.045 0.955 18 C -0.188 4.188 19 N -0.587 5.587 20 Si 0.772 3.228 21 H -0.203 1.203 22 H -0.200 1.200 23 H -0.160 1.160 24 H 0.111 0.889 25 H 0.110 0.890 26 H 0.077 0.923 27 H 0.173 0.827 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.133 0.867 31 H 0.121 0.879 32 H 0.129 0.871 33 H 0.116 0.884 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.034 0.966 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -13.456 3.836 -17.488 22.397 hybrid contribution 0.364 -0.619 1.509 1.671 sum -13.093 3.217 -15.979 20.907 Atomic orbital electron populations 1.22788 0.92243 1.03705 1.05666 1.21454 0.96119 0.97820 0.87666 0.86963 1.59976 1.58886 1.09207 1.02221 1.22557 0.92095 0.97154 0.90365 0.88716 1.22476 1.00027 1.00739 0.92356 1.24259 0.90859 1.04529 1.00824 1.87726 1.11437 1.96340 1.15597 1.24981 1.00928 1.06337 0.91564 1.21352 0.79886 0.84775 0.85328 1.90629 1.39223 1.29194 1.86905 1.47924 1.50694 1.29737 1.05697 1.22140 0.94474 0.86463 1.03658 1.19296 0.93540 0.92740 0.84236 1.21590 1.05208 1.19182 1.11480 0.95495 1.25879 0.95041 0.99430 0.98488 1.70056 1.16651 1.44389 1.27590 0.85696 0.80730 0.78696 0.77690 1.20339 1.20005 1.15954 0.88910 0.89040 0.92274 0.82666 0.90580 0.89543 0.86718 0.87895 0.87066 0.88413 0.89704 0.91808 0.89288 0.93166 0.96573 0.92300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.11 8.57 71.98 0.62 -2.49 16 2 C 0.08 2.09 2.19 44.17 0.10 2.18 16 3 H 0.11 2.57 6.67 -2.39 -0.02 2.55 16 4 N -0.67 -16.57 5.56 -469.33 -2.61 -19.18 16 5 C 0.09 1.63 2.90 45.69 0.13 1.77 16 6 H 0.09 1.68 7.40 -2.38 -0.02 1.66 16 7 C -0.12 -2.11 6.09 31.67 0.19 -1.92 16 8 C -0.06 -0.84 7.38 72.71 0.54 -0.31 16 9 S -0.34 -6.17 23.26 -56.49 -1.31 -7.48 16 10 C -0.09 -1.34 5.48 72.41 0.40 -0.95 16 11 C 0.50 19.61 7.14 87.66 0.63 20.24 16 12 O -0.58 -29.31 16.01 -3.02 -0.05 -29.36 16 13 N -0.61 -23.85 2.86 -851.10 -2.43 -26.28 16 14 C 0.07 1.96 8.80 127.77 1.12 3.09 16 15 C 0.22 10.88 4.23 85.63 0.36 11.24 16 16 C -0.54 -31.74 9.94 25.60 0.25 -31.48 16 17 H 0.03 1.78 8.06 -2.91 -0.02 1.76 16 18 C 0.01 0.56 5.47 84.65 0.46 1.02 16 19 N -0.95 -60.30 13.96 21.45 0.30 -60.00 16 20 Si 0.95 44.61 27.47 68.60 1.88 46.49 16 21 H -0.28 -13.18 7.11 99.48 0.71 -12.48 16 22 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.24 -9.89 6.54 99.48 0.65 -9.23 16 24 H 0.09 1.38 4.53 -2.39 -0.01 1.37 16 25 H 0.09 1.05 5.64 -2.39 -0.01 1.04 16 26 H 0.06 1.08 8.13 -2.39 -0.02 1.06 16 27 H 0.35 8.26 7.87 -89.70 -0.71 7.56 16 28 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.11 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.10 1.33 8.14 -2.38 -0.02 1.31 16 32 H 0.11 1.38 7.01 -2.39 -0.02 1.36 16 33 H 0.10 1.44 7.59 -2.39 -0.02 1.42 16 34 H 0.08 1.64 6.95 -2.38 -0.02 1.62 16 35 H 0.06 1.84 8.07 -2.39 -0.02 1.83 16 36 H 0.09 1.81 6.01 -2.39 -0.01 1.80 16 37 H 0.05 2.21 7.13 -2.38 -0.02 2.20 16 38 H 0.02 0.85 6.85 -2.39 -0.02 0.83 16 39 H 0.27 15.85 8.31 -92.71 -0.77 15.08 16 Total: -1.00 -78.63 316.87 0.87 -77.76 By element: Atomic # 1 Polarization: 15.36 SS G_CDS: 0.29 Total: 15.66 kcal Atomic # 6 Polarization: -2.41 SS G_CDS: 4.80 Total: 2.40 kcal Atomic # 7 Polarization: -100.71 SS G_CDS: -4.74 Total: -105.46 kcal Atomic # 8 Polarization: -29.31 SS G_CDS: -0.05 Total: -29.36 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.88 Total: 46.49 kcal Atomic # 16 Polarization: -6.17 SS G_CDS: -1.31 Total: -7.48 kcal Total: -78.63 0.87 -77.76 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309536043.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.347 kcal (2) G-P(sol) polarization free energy of solvation -78.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.873 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.758 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds