Wall clock time and date at job start Mon Mar 30 2020 05:24:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 108.82630 * 2 1 4 4 C 1.54257 * 108.86926 * 241.60250 * 2 1 3 5 5 S 1.83961 * 102.57970 * 214.65179 * 4 2 1 6 6 C 1.83965 * 94.80565 * 34.49682 * 5 4 2 7 7 C 1.52334 * 108.86417 * 118.52607 * 2 1 3 8 8 H 1.08999 * 108.86651 * 241.63896 * 7 2 1 9 9 N 1.46902 * 108.87301 * 0.14499 * 7 2 1 10 10 C 1.46894 * 111.00023 * 191.89658 * 9 7 2 11 11 C 1.50700 * 109.47117 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00416 * 0.02562 * 13 11 10 15 15 C 1.46508 * 120.00017 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.46841 * 90.00264 * 15 13 11 17 17 H 1.07998 * 119.99868 * 0.02562 * 16 15 13 18 18 C 1.37876 * 119.99877 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99941 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47119 * 89.99841 * 20 18 16 22 22 H 1.48498 * 109.47230 * 210.00550 * 20 18 16 23 23 H 1.48505 * 109.47079 * 329.99882 * 20 18 16 24 24 H 1.08993 * 109.47129 * 308.27771 * 1 2 3 25 25 H 1.08997 * 109.47058 * 68.27659 * 1 2 3 26 26 H 1.09004 * 109.46820 * 188.27243 * 1 2 3 27 27 H 1.08994 * 110.78779 * 332.92376 * 4 2 1 28 28 H 1.09000 * 110.78636 * 96.38106 * 4 2 1 29 29 H 1.08996 * 110.78041 * 207.23242 * 6 5 4 30 30 H 1.08994 * 110.78550 * 83.77520 * 6 5 4 31 31 H 1.00898 * 110.99424 * 315.85008 * 9 7 2 32 32 H 1.09003 * 109.47452 * 299.99900 * 10 9 7 33 33 H 1.09002 * 109.47502 * 60.00405 * 10 9 7 34 34 H 1.08994 * 109.47699 * 89.99334 * 14 13 11 35 35 H 1.09000 * 109.47206 * 209.99697 * 14 13 11 36 36 H 1.09011 * 109.46729 * 329.99523 * 14 13 11 37 37 H 1.08999 * 109.47329 * 210.00422 * 15 13 11 38 38 H 1.08999 * 109.47124 * 330.00597 * 15 13 11 39 39 H 0.97001 * 119.99830 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0289 -0.6942 -1.2840 5 16 3.5561 -1.5454 -0.7118 6 6 2.9047 -1.9181 0.9678 7 6 2.0226 -0.6884 1.2665 8 1 2.6002 0.0254 1.8538 9 7 0.8608 -1.1209 2.0548 10 6 1.2652 -1.5334 3.4054 11 6 0.0497 -1.9687 4.1826 12 8 -1.0455 -1.9387 3.6624 13 7 0.1798 -2.3924 5.4554 14 6 1.5027 -2.4291 6.0836 15 6 -1.0018 -2.8161 6.2108 16 6 -1.2247 -4.2928 6.0081 17 1 -0.5530 -4.8589 5.3799 18 6 -2.2859 -4.9208 6.6248 19 7 -2.4801 -6.2095 6.4483 20 14 -3.4480 -3.9414 7.7109 21 1 -4.5632 -3.4081 6.8881 22 1 -3.9943 -4.8235 8.7732 23 1 -2.7100 -2.8138 8.3349 24 1 -0.3633 0.6366 0.8067 25 1 -0.3633 0.3804 -0.9547 26 1 -0.3633 -1.0170 0.1479 27 1 1.2955 -1.4158 -1.6436 28 1 2.2612 0.0400 -2.0554 29 1 3.7178 -1.9955 1.6895 30 1 2.3070 -2.8295 0.9573 31 1 0.1597 -0.3963 2.0927 32 1 1.9691 -2.3628 3.3366 33 1 1.7403 -0.6949 3.9145 34 1 1.6991 -1.4754 6.5733 35 1 1.5318 -3.2298 6.8227 36 1 2.2616 -2.6097 5.3222 37 1 -0.8472 -2.6141 7.2707 38 1 -1.8744 -2.2654 5.8595 39 1 -3.2269 -6.6513 6.8818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309780952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:56 Heat of formation + Delta-G solvation = -18.000293 kcal Electronic energy + Delta-G solvation = -19266.492605 eV Core-core repulsion = 16335.879282 eV Total energy + Delta-G solvation = -2930.613322 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.44214 -38.17125 -34.95483 -33.64054 -32.50679 -30.18431 -28.96482 -27.57896 -26.18948 -25.42256 -23.58446 -21.96922 -19.43003 -18.62537 -17.18048 -16.96478 -16.56485 -16.16369 -15.74946 -15.16147 -14.68113 -14.45525 -14.17431 -13.82048 -13.32784 -13.06258 -12.76414 -12.42948 -12.36407 -12.25949 -12.05571 -12.03207 -11.90200 -11.50771 -11.39459 -11.19120 -11.04131 -10.88619 -10.53621 -10.16429 -10.12228 -9.55034 -9.06038 -8.59435 -8.47595 -7.89867 -7.72723 -6.08886 -4.07810 1.70727 2.10621 3.28222 3.29757 3.34214 3.35816 3.61276 4.16081 4.24701 4.38957 4.50356 4.64326 4.91894 4.96519 5.03646 5.20617 5.24613 5.30148 5.32525 5.40849 5.45907 5.48136 5.58918 5.63998 5.80044 5.82200 5.82735 6.11914 6.26777 6.61133 6.81159 6.94057 7.26839 7.31358 7.60173 8.21805 8.46466 8.92167 8.97634 9.51118 11.04572 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.003895 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.009750 B = 7187.328206 C = 7334.768440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.093 4.093 3 H 0.081 0.919 4 C -0.055 4.055 5 S -0.307 6.307 6 C -0.057 4.057 7 C 0.089 3.911 8 H 0.051 0.949 9 N -0.666 5.666 10 C 0.038 3.962 11 C 0.506 3.494 12 O -0.528 6.528 13 N -0.599 5.599 14 C 0.083 3.917 15 C 0.217 3.783 16 C -0.529 4.529 17 H 0.074 0.926 18 C 0.072 3.928 19 N -0.897 5.897 20 Si 0.877 3.123 21 H -0.273 1.273 22 H -0.285 1.285 23 H -0.267 1.267 24 H 0.058 0.942 25 H 0.055 0.945 26 H 0.085 0.915 27 H 0.094 0.906 28 H 0.102 0.898 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.357 0.643 32 H 0.097 0.903 33 H 0.053 0.947 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.059 0.941 37 H 0.029 0.971 38 H 0.036 0.964 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.620 14.218 -9.551 20.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.113 4.113 3 H 0.099 0.901 4 C -0.203 4.203 5 S -0.081 6.081 6 C -0.205 4.205 7 C -0.022 4.022 8 H 0.069 0.931 9 N -0.303 5.303 10 C -0.095 4.095 11 C 0.292 3.708 12 O -0.404 6.404 13 N -0.332 5.332 14 C -0.061 4.061 15 C 0.096 3.904 16 C -0.567 4.567 17 H 0.092 0.908 18 C -0.130 4.130 19 N -0.536 5.536 20 Si 0.704 3.296 21 H -0.199 1.199 22 H -0.211 1.211 23 H -0.191 1.191 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.104 0.896 27 H 0.113 0.887 28 H 0.121 0.879 29 H 0.119 0.881 30 H 0.124 0.876 31 H 0.182 0.818 32 H 0.115 0.885 33 H 0.071 0.929 34 H 0.063 0.937 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 11.986 13.208 -10.546 20.721 hybrid contribution -1.342 1.275 1.649 2.479 sum 10.644 14.483 -8.897 20.055 Atomic orbital electron populations 1.21924 0.93148 1.04423 1.01262 1.21679 0.97982 0.99765 0.91911 0.90075 1.24226 0.95465 1.01086 0.99546 1.87956 1.25239 1.76721 1.18163 1.24310 1.00782 1.01646 0.93794 1.22048 0.91168 0.94154 0.94873 0.93069 1.60615 1.11132 1.45870 1.12685 1.21936 0.96993 1.00972 0.89574 1.20180 0.90175 0.78635 0.81858 1.90672 1.27643 1.54142 1.67897 1.47836 1.08918 1.63778 1.12704 1.21660 0.84377 1.01387 0.98665 1.19655 0.83669 0.96463 0.90614 1.21330 1.13280 0.91664 1.30468 0.90756 1.24862 0.97083 0.94805 0.96268 1.69899 1.30463 1.09230 1.43963 0.86844 0.81926 0.80211 0.80644 1.19900 1.21063 1.19135 0.92360 0.92587 0.89631 0.88726 0.87950 0.88090 0.87642 0.81844 0.88451 0.92908 0.93720 0.90461 0.92273 0.95281 0.94600 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.40 7.68 37.16 0.29 -1.11 16 2 C -0.09 -0.83 3.17 -90.30 -0.29 -1.12 16 3 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 4 C -0.06 -0.49 6.90 37.82 0.26 -0.23 16 5 S -0.31 -3.41 23.27 -107.50 -2.50 -5.91 16 6 C -0.06 -0.60 6.00 37.82 0.23 -0.38 16 7 C 0.09 0.91 2.97 -67.39 -0.20 0.71 16 8 H 0.05 0.48 8.03 -51.93 -0.42 0.06 16 9 N -0.67 -8.56 4.60 -107.65 -0.50 -9.06 16 10 C 0.04 0.51 4.48 -4.98 -0.02 0.49 16 11 C 0.51 9.90 7.71 -10.99 -0.08 9.81 16 12 O -0.53 -12.59 15.78 5.56 0.09 -12.50 16 13 N -0.60 -12.01 2.86 -182.95 -0.52 -12.53 16 14 C 0.08 1.22 10.24 59.85 0.61 1.83 16 15 C 0.22 5.25 4.23 -5.19 -0.02 5.23 16 16 C -0.53 -15.21 9.94 -34.44 -0.34 -15.55 16 17 H 0.07 2.35 8.06 -52.49 -0.42 1.93 16 18 C 0.07 2.11 5.47 -17.82 -0.10 2.01 16 19 N -0.90 -27.75 13.96 55.43 0.77 -26.97 16 20 Si 0.88 21.51 27.47 -169.99 -4.67 16.84 16 21 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 22 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 23 H -0.27 -6.13 6.54 56.52 0.37 -5.76 16 24 H 0.06 0.54 6.90 -51.93 -0.36 0.18 16 25 H 0.06 0.45 8.11 -51.93 -0.42 0.03 16 26 H 0.08 1.02 7.33 -51.93 -0.38 0.64 16 27 H 0.09 0.87 7.86 -51.93 -0.41 0.46 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.11 1.29 8.05 -51.93 -0.42 0.88 16 31 H 0.36 4.66 5.76 -39.29 -0.23 4.43 16 32 H 0.10 1.23 6.61 -51.93 -0.34 0.89 16 33 H 0.05 0.59 8.07 -51.93 -0.42 0.17 16 34 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.08 1.19 8.07 -51.93 -0.42 0.77 16 36 H 0.06 0.70 6.44 -51.92 -0.33 0.37 16 37 H 0.03 0.67 7.13 -51.93 -0.37 0.30 16 38 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 39 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 321.61 15.07 4.85 4.85 Total: -1.00 -33.71 321.61 -8.30 -42.01 By element: Atomic # 1 Polarization: 7.73 SS G_CDS: -6.15 Total: 1.58 kcal Atomic # 6 Polarization: 1.36 SS G_CDS: 0.33 Total: 1.70 kcal Atomic # 7 Polarization: -48.32 SS G_CDS: -0.24 Total: -48.57 kcal Atomic # 8 Polarization: -12.59 SS G_CDS: 0.09 Total: -12.50 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -4.67 Total: 16.84 kcal Atomic # 16 Polarization: -3.41 SS G_CDS: -2.50 Total: -5.91 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -33.71 -8.30 -42.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309780952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.012 kcal (2) G-P(sol) polarization free energy of solvation -33.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds