Wall clock time and date at job start Mon Mar 30 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08999 * 108.82630 * 2 1 4 4 C 1.54257 * 108.86926 * 241.60250 * 2 1 3 5 5 S 1.83961 * 102.57970 * 214.65179 * 4 2 1 6 6 C 1.83965 * 94.80565 * 34.49682 * 5 4 2 7 7 C 1.52334 * 108.86417 * 118.52607 * 2 1 3 8 8 H 1.08999 * 108.86651 * 241.63896 * 7 2 1 9 9 N 1.46902 * 108.87301 * 0.14499 * 7 2 1 10 10 C 1.46894 * 111.00023 * 191.89658 * 9 7 2 11 11 C 1.50700 * 109.47117 * 179.97438 * 10 9 7 12 12 O 1.21280 * 119.99683 * 0.02562 * 11 10 9 13 13 N 1.34770 * 120.00100 * 179.97438 * 11 10 9 14 14 C 1.46497 * 120.00416 * 0.02562 * 13 11 10 15 15 C 1.46508 * 120.00017 * 180.02562 * 13 11 10 16 16 C 1.50707 * 109.46841 * 90.00264 * 15 13 11 17 17 H 1.07998 * 119.99868 * 0.02562 * 16 15 13 18 18 C 1.37876 * 119.99877 * 180.02562 * 16 15 13 19 19 N 1.31513 * 119.99941 * 180.02562 * 18 16 15 20 20 Si 1.86799 * 120.00108 * 0.02562 * 18 16 15 21 21 H 1.48498 * 109.47119 * 89.99841 * 20 18 16 22 22 H 1.48498 * 109.47230 * 210.00550 * 20 18 16 23 23 H 1.48505 * 109.47079 * 329.99882 * 20 18 16 24 24 H 1.08993 * 109.47129 * 308.27771 * 1 2 3 25 25 H 1.08997 * 109.47058 * 68.27659 * 1 2 3 26 26 H 1.09004 * 109.46820 * 188.27243 * 1 2 3 27 27 H 1.08994 * 110.78779 * 332.92376 * 4 2 1 28 28 H 1.09000 * 110.78636 * 96.38106 * 4 2 1 29 29 H 1.08996 * 110.78041 * 207.23242 * 6 5 4 30 30 H 1.08994 * 110.78550 * 83.77520 * 6 5 4 31 31 H 1.00898 * 110.99424 * 315.85008 * 9 7 2 32 32 H 1.09003 * 109.47452 * 299.99900 * 10 9 7 33 33 H 1.09002 * 109.47502 * 60.00405 * 10 9 7 34 34 H 1.08994 * 109.47699 * 89.99334 * 14 13 11 35 35 H 1.09000 * 109.47206 * 209.99697 * 14 13 11 36 36 H 1.09011 * 109.46729 * 329.99523 * 14 13 11 37 37 H 1.08999 * 109.47329 * 210.00422 * 15 13 11 38 38 H 1.08999 * 109.47124 * 330.00597 * 15 13 11 39 39 H 0.97001 * 119.99830 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8818 1.0317 0.0000 4 6 2.0289 -0.6942 -1.2840 5 16 3.5561 -1.5454 -0.7118 6 6 2.9047 -1.9181 0.9678 7 6 2.0226 -0.6884 1.2665 8 1 2.6002 0.0254 1.8538 9 7 0.8608 -1.1209 2.0548 10 6 1.2652 -1.5334 3.4054 11 6 0.0497 -1.9687 4.1826 12 8 -1.0455 -1.9387 3.6624 13 7 0.1798 -2.3924 5.4554 14 6 1.5027 -2.4291 6.0836 15 6 -1.0018 -2.8161 6.2108 16 6 -1.2247 -4.2928 6.0081 17 1 -0.5530 -4.8589 5.3799 18 6 -2.2859 -4.9208 6.6248 19 7 -2.4801 -6.2095 6.4483 20 14 -3.4480 -3.9414 7.7109 21 1 -4.5632 -3.4081 6.8881 22 1 -3.9943 -4.8235 8.7732 23 1 -2.7100 -2.8138 8.3349 24 1 -0.3633 0.6366 0.8067 25 1 -0.3633 0.3804 -0.9547 26 1 -0.3633 -1.0170 0.1479 27 1 1.2955 -1.4158 -1.6436 28 1 2.2612 0.0400 -2.0554 29 1 3.7178 -1.9955 1.6895 30 1 2.3070 -2.8295 0.9573 31 1 0.1597 -0.3963 2.0927 32 1 1.9691 -2.3628 3.3366 33 1 1.7403 -0.6949 3.9145 34 1 1.6991 -1.4754 6.5733 35 1 1.5318 -3.2298 6.8227 36 1 2.2616 -2.6097 5.3222 37 1 -0.8472 -2.6141 7.2707 38 1 -1.8744 -2.2654 5.8595 39 1 -3.2269 -6.6513 6.8818 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309780952.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:24:55 Heat of formation + Delta-G solvation = -41.730354 kcal Electronic energy + Delta-G solvation = -19267.521617 eV Core-core repulsion = 16335.879282 eV Total energy + Delta-G solvation = -2931.642335 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.79879 -39.19409 -36.59702 -34.82203 -34.43569 -31.20033 -30.57343 -28.60635 -27.38683 -26.70538 -24.65288 -23.62082 -20.31960 -19.99932 -19.14737 -18.22530 -17.56720 -17.38187 -17.01072 -16.61284 -15.93702 -15.78563 -15.44276 -14.87911 -14.58228 -14.22635 -14.13541 -14.00790 -13.63195 -13.51664 -13.23584 -13.12167 -12.99244 -12.79422 -12.70223 -12.42097 -12.23973 -12.02260 -11.94001 -11.76709 -11.74250 -10.94167 -10.83183 -10.61744 -9.44697 -9.33440 -8.76315 -8.33830 -6.39149 0.90918 1.31856 1.32784 1.37138 1.45442 1.81583 2.26887 2.31295 3.00679 3.17823 3.43915 3.75043 3.78798 3.88748 4.14375 4.21675 4.29609 4.35241 4.49730 4.51259 4.64372 4.67138 4.69681 4.73431 4.76784 4.83005 4.95461 4.98270 5.06295 5.10649 5.46222 5.48292 5.60856 5.90047 6.24623 6.30820 6.62615 6.73722 7.22039 7.45691 8.83376 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.031069 B = 0.003895 C = 0.003817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 901.009750 B = 7187.328206 C = 7334.768440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.089 4.089 3 H 0.103 0.897 4 C -0.047 4.047 5 S -0.340 6.340 6 C -0.052 4.052 7 C 0.093 3.907 8 H 0.072 0.928 9 N -0.683 5.683 10 C 0.053 3.947 11 C 0.494 3.506 12 O -0.582 6.582 13 N -0.610 5.610 14 C 0.076 3.924 15 C 0.224 3.776 16 C -0.537 4.537 17 H 0.026 0.974 18 C 0.009 3.991 19 N -0.947 5.947 20 Si 0.950 3.050 21 H -0.276 1.276 22 H -0.276 1.276 23 H -0.236 1.236 24 H 0.059 0.941 25 H 0.070 0.930 26 H 0.055 0.945 27 H 0.087 0.913 28 H 0.123 0.877 29 H 0.116 0.884 30 H 0.082 0.918 31 H 0.356 0.644 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.081 0.919 35 H 0.064 0.936 36 H 0.088 0.912 37 H 0.050 0.950 38 H 0.019 0.981 39 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.866 16.998 -8.900 23.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 H 0.121 0.879 4 C -0.194 4.194 5 S -0.114 6.114 6 C -0.201 4.201 7 C -0.018 4.018 8 H 0.090 0.910 9 N -0.321 5.321 10 C -0.079 4.079 11 C 0.283 3.717 12 O -0.462 6.462 13 N -0.342 5.342 14 C -0.066 4.066 15 C 0.102 3.898 16 C -0.575 4.575 17 H 0.044 0.956 18 C -0.189 4.189 19 N -0.587 5.587 20 Si 0.773 3.227 21 H -0.202 1.202 22 H -0.201 1.201 23 H -0.160 1.160 24 H 0.077 0.923 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.134 0.866 30 H 0.101 0.899 31 H 0.180 0.820 32 H 0.127 0.873 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.082 0.918 36 H 0.107 0.893 37 H 0.068 0.932 38 H 0.037 0.963 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 13.302 16.003 -9.890 23.040 hybrid contribution -1.679 0.337 1.349 2.180 sum 11.624 16.340 -8.541 21.796 Atomic orbital electron populations 1.21835 0.93689 1.02585 1.02108 1.21698 0.97326 1.00690 0.91230 0.87900 1.24307 0.93882 1.01095 1.00157 1.88076 1.26855 1.77324 1.19111 1.24290 1.01000 1.00994 0.93816 1.22131 0.90213 0.94194 0.95258 0.91048 1.60581 1.12403 1.46561 1.12573 1.21846 0.93918 1.02579 0.89528 1.21284 0.91389 0.77431 0.81634 1.90637 1.30241 1.56374 1.68975 1.47964 1.09695 1.63351 1.13157 1.21974 0.82282 1.02959 0.99344 1.19311 0.85358 0.92986 0.92176 1.21587 1.12537 0.94001 1.29420 0.95559 1.25889 0.99065 0.95873 0.98036 1.70060 1.31598 1.11394 1.45666 0.85680 0.79115 0.79379 0.78536 1.20207 1.20071 1.15951 0.92255 0.91116 0.92641 0.89397 0.85855 0.86583 0.89883 0.82008 0.87284 0.89112 0.90049 0.91755 0.89302 0.93186 0.96331 0.92295 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.51 7.68 71.98 0.55 -1.96 16 2 C -0.09 -1.38 3.17 -10.59 -0.03 -1.41 16 3 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 4 C -0.05 -0.74 6.90 72.41 0.50 -0.25 16 5 S -0.34 -7.07 23.27 -56.49 -1.31 -8.39 16 6 C -0.05 -1.03 6.00 72.41 0.43 -0.60 16 7 C 0.09 1.66 2.97 45.12 0.13 1.80 16 8 H 0.07 1.04 8.03 -2.39 -0.02 1.02 16 9 N -0.68 -16.63 4.60 -494.51 -2.28 -18.90 16 10 C 0.05 1.33 4.48 85.56 0.38 1.71 16 11 C 0.49 19.07 7.71 87.66 0.68 19.74 16 12 O -0.58 -28.44 15.78 -3.03 -0.05 -28.49 16 13 N -0.61 -23.83 2.86 -851.11 -2.43 -26.26 16 14 C 0.08 2.03 10.24 127.77 1.31 3.34 16 15 C 0.22 10.81 4.23 85.63 0.36 11.17 16 16 C -0.54 -31.78 9.94 25.60 0.25 -31.52 16 17 H 0.03 1.75 8.06 -2.91 -0.02 1.72 16 18 C 0.01 0.54 5.47 84.65 0.46 1.01 16 19 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 20 Si 0.95 44.44 27.47 68.60 1.88 46.33 16 21 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 22 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 23 H -0.24 -9.82 6.54 99.48 0.65 -9.17 16 24 H 0.06 1.03 6.90 -2.39 -0.02 1.01 16 25 H 0.07 1.01 8.11 -2.39 -0.02 0.99 16 26 H 0.05 1.33 7.33 -2.39 -0.02 1.31 16 27 H 0.09 1.53 7.86 -2.39 -0.02 1.51 16 28 H 0.12 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.12 1.90 8.14 -2.39 -0.02 1.88 16 30 H 0.08 2.02 8.05 -2.39 -0.02 2.00 16 31 H 0.36 8.89 5.76 -89.70 -0.52 8.37 16 32 H 0.11 2.49 6.61 -2.39 -0.02 2.47 16 33 H 0.09 1.62 8.07 -2.39 -0.02 1.60 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.06 1.88 8.07 -2.39 -0.02 1.86 16 36 H 0.09 1.82 6.44 -2.38 -0.02 1.80 16 37 H 0.05 2.20 7.13 -2.39 -0.02 2.18 16 38 H 0.02 0.96 6.85 -2.39 -0.02 0.95 16 39 H 0.27 15.88 8.31 -92.71 -0.77 15.11 16 Total: -1.00 -77.56 321.61 1.61 -75.95 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: 0.46 Total: 16.87 kcal Atomic # 6 Polarization: -2.00 SS G_CDS: 5.04 Total: 3.03 kcal Atomic # 7 Polarization: -100.89 SS G_CDS: -4.41 Total: -105.30 kcal Atomic # 8 Polarization: -28.44 SS G_CDS: -0.05 Total: -28.49 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 1.88 Total: 46.33 kcal Atomic # 16 Polarization: -7.07 SS G_CDS: -1.31 Total: -8.39 kcal Total: -77.56 1.61 -75.95 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309780952.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.222 kcal (2) G-P(sol) polarization free energy of solvation -77.565 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.343 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.612 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.953 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds