Wall clock time and date at job start Mon Mar 30 2020 05:22:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.12455 * 2 1 4 4 N 1.45751 * 109.30076 * 119.47900 * 2 1 3 5 5 C 1.33357 * 124.10127 * 101.21928 * 4 2 1 6 6 O 1.21290 * 118.24273 * 182.26769 * 5 4 2 7 7 C 1.50167 * 123.51362 * 2.24173 * 5 4 2 8 8 C 1.53012 * 110.00674 * 342.53476 * 7 5 4 9 9 C 1.52922 * 109.30215 * 240.51993 * 2 1 3 10 10 H 1.08998 * 109.60187 * 170.51852 * 9 2 1 11 11 N 1.46903 * 109.60462 * 50.19493 * 9 2 1 12 12 C 1.46893 * 110.99924 * 155.32282 * 11 9 2 13 13 C 1.52996 * 109.47069 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47486 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.47647 * 180.02562 * 14 13 12 16 16 C 1.76194 * 100.00068 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00457 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31640 * 119.99650 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00461 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46966 * 89.99788 * 20 18 16 22 22 H 1.48500 * 109.47223 * 209.99878 * 20 18 16 23 23 H 1.48501 * 109.47335 * 329.99952 * 20 18 16 24 24 H 1.09004 * 109.47308 * 179.48017 * 1 2 3 25 25 H 1.09002 * 109.47483 * 299.48260 * 1 2 3 26 26 H 1.09002 * 109.47069 * 59.47991 * 1 2 3 27 27 H 0.96997 * 117.94749 * 281.23612 * 4 2 1 28 28 H 1.09005 * 109.40063 * 102.54423 * 7 5 4 29 29 H 1.09000 * 109.40667 * 222.38022 * 7 5 4 30 30 H 1.09003 * 109.51027 * 288.97339 * 8 7 5 31 31 H 1.08995 * 109.80044 * 168.45886 * 8 7 5 32 32 H 1.00900 * 110.99399 * 31.37380 * 11 9 2 33 33 H 1.09001 * 109.47196 * 60.00007 * 12 11 9 34 34 H 1.09000 * 109.47767 * 300.00540 * 12 11 9 35 35 H 1.09001 * 109.46997 * 60.00578 * 13 12 11 36 36 H 1.08996 * 109.47452 * 300.00152 * 13 12 11 37 37 H 1.09001 * 109.47109 * 59.99943 * 14 13 12 38 38 H 1.09004 * 109.47086 * 300.00416 * 14 13 12 39 39 H 0.97001 * 119.99781 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8871 1.0299 0.0000 4 7 2.0117 -0.6769 1.1975 5 6 2.4616 -1.9322 1.2170 6 8 2.7984 -2.4047 2.2820 7 6 2.5731 -2.7921 -0.0091 8 6 1.7223 -2.2067 -1.1382 9 6 2.0354 -0.7103 -1.2564 10 1 3.1122 -0.5681 -1.3486 11 7 1.3622 -0.1578 -2.4395 12 6 2.1768 -0.3505 -3.6466 13 6 1.4442 0.2357 -4.8551 14 6 2.2923 0.0344 -6.1126 15 16 1.4260 0.7286 -7.5422 16 6 2.5930 0.3678 -8.8119 17 1 3.5148 -0.1404 -8.5698 18 6 2.3284 0.7377 -10.1233 19 7 1.2052 1.3576 -10.4184 20 14 3.5659 0.3559 -11.4694 21 1 3.2712 -0.9794 -12.0485 22 1 3.4744 1.3880 -12.5332 23 1 4.9360 0.3556 -10.8966 24 1 -0.3634 -1.0276 -0.0093 25 1 -0.3634 0.5058 0.8946 26 1 -0.3633 0.5219 -0.8853 27 1 2.0044 -0.1836 2.0326 28 1 3.6144 -2.8340 -0.3285 29 1 2.2242 -3.7987 0.2216 30 1 0.6660 -2.3434 -0.9064 31 1 1.9603 -2.7067 -2.0770 32 1 1.1387 0.8170 -2.3059 33 1 2.3446 -1.4158 -3.8055 34 1 3.1352 0.1535 -3.5226 35 1 1.2762 1.3009 -4.6965 36 1 0.4860 -0.2688 -4.9790 37 1 2.4600 -1.0309 -6.2710 38 1 3.2507 0.5387 -5.9889 39 1 1.0201 1.6157 -11.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000309803174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:05 Heat of formation + Delta-G solvation = -58.921694 kcal Electronic energy + Delta-G solvation = -18367.832028 eV Core-core repulsion = 15435.444220 eV Total energy + Delta-G solvation = -2932.387808 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.80512 -38.09818 -35.66202 -33.39281 -32.46374 -32.22410 -30.19084 -26.80704 -25.64824 -24.60470 -23.81377 -22.02487 -21.20225 -18.89922 -17.48949 -17.41750 -16.89350 -16.00951 -15.63998 -15.19511 -14.82408 -14.58365 -14.36761 -14.27581 -13.99996 -13.62524 -13.10116 -12.86823 -12.53277 -12.23032 -12.13063 -11.98118 -11.59142 -11.36310 -11.15689 -11.12536 -11.07190 -10.83206 -10.63891 -10.46867 -10.01042 -9.57419 -9.45084 -9.07868 -8.66248 -8.33080 -6.55269 -6.24976 -3.95354 2.35370 2.90264 3.19866 3.20472 3.27499 3.50270 3.84924 4.12669 4.20618 4.31970 4.43443 4.68799 4.84523 4.94054 5.05855 5.11077 5.18005 5.20421 5.34140 5.39122 5.44418 5.49609 5.55056 5.64957 5.68969 5.80760 5.85868 6.03826 6.05430 6.27681 6.43527 6.54115 6.65438 6.83002 7.01519 7.15437 7.58423 7.90507 8.34423 9.21446 10.83204 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045266 B = 0.002745 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.421904 B =10199.432845 C =10609.050662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.134 3.866 3 H 0.084 0.916 4 N -0.713 5.713 5 C 0.521 3.479 6 O -0.562 6.562 7 C -0.137 4.137 8 C -0.115 4.115 9 C 0.077 3.923 10 H 0.053 0.947 11 N -0.676 5.676 12 C 0.063 3.937 13 C -0.095 4.095 14 C -0.113 4.113 15 S -0.132 6.132 16 C -0.517 4.517 17 H 0.072 0.928 18 C 0.071 3.929 19 N -0.870 5.870 20 Si 0.918 3.082 21 H -0.277 1.277 22 H -0.282 1.282 23 H -0.272 1.272 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.081 0.919 27 H 0.399 0.601 28 H 0.099 0.901 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.343 0.657 33 H 0.073 0.927 34 H 0.030 0.970 35 H 0.064 0.936 36 H 0.075 0.925 37 H 0.060 0.940 38 H 0.058 0.942 39 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.269 -2.934 19.965 20.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.028 3.972 3 H 0.102 0.898 4 N -0.365 5.365 5 C 0.308 3.692 6 O -0.441 6.441 7 C -0.177 4.177 8 C -0.153 4.153 9 C -0.034 4.034 10 H 0.071 0.929 11 N -0.308 5.308 12 C -0.068 4.068 13 C -0.134 4.134 14 C -0.262 4.262 15 S 0.096 5.904 16 C -0.665 4.665 17 H 0.090 0.910 18 C -0.138 4.138 19 N -0.505 5.505 20 Si 0.745 3.255 21 H -0.203 1.203 22 H -0.208 1.208 23 H -0.197 1.197 24 H 0.083 0.917 25 H 0.073 0.927 26 H 0.100 0.900 27 H 0.234 0.766 28 H 0.117 0.883 29 H 0.121 0.879 30 H 0.098 0.902 31 H 0.100 0.900 32 H 0.163 0.837 33 H 0.091 0.909 34 H 0.048 0.952 35 H 0.082 0.918 36 H 0.094 0.906 37 H 0.079 0.921 38 H 0.076 0.924 39 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -1.045 -3.257 19.960 20.251 hybrid contribution 2.648 0.129 -0.494 2.697 sum 1.603 -3.129 19.466 19.781 Atomic orbital electron populations 1.22232 0.93865 1.03337 1.02622 1.21094 0.95564 0.96006 0.84507 0.89825 1.45537 1.64924 1.14015 1.12046 1.20279 0.75828 0.81932 0.91119 1.90762 1.49956 1.71640 1.31786 1.21658 1.03161 0.99862 0.93024 1.21724 1.00790 0.94340 0.98431 1.21734 0.96826 0.95438 0.89363 0.92868 1.60551 1.45658 1.23134 1.01488 1.22112 0.94119 1.01359 0.89172 1.21239 0.99318 1.01120 0.91714 1.23222 1.01490 1.02938 0.98572 1.84630 1.30201 1.76989 0.98577 1.22689 1.05961 1.44292 0.93542 0.90988 1.25020 0.96056 0.94649 0.98095 1.70026 1.23183 1.37507 1.19818 0.86165 0.80685 0.78240 0.80432 1.20251 1.20755 1.19709 0.91740 0.92663 0.89993 0.76566 0.88271 0.87865 0.90182 0.90028 0.83734 0.90867 0.95169 0.91777 0.90618 0.92102 0.92368 0.92296 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.04 9.04 37.16 0.34 -0.70 16 2 C 0.13 0.87 3.33 -68.38 -0.23 0.65 16 3 H 0.08 0.45 8.14 -51.92 -0.42 0.02 16 4 N -0.71 -5.57 5.03 -54.85 -0.28 -5.85 16 5 C 0.52 5.35 7.72 -11.87 -0.09 5.26 16 6 O -0.56 -8.09 17.78 5.55 0.10 -7.99 16 7 C -0.14 -1.10 6.03 -28.13 -0.17 -1.27 16 8 C -0.11 -0.90 5.53 -26.55 -0.15 -1.04 16 9 C 0.08 0.60 2.25 -67.57 -0.15 0.44 16 10 H 0.05 0.44 7.79 -51.93 -0.40 0.04 16 11 N -0.68 -6.03 5.47 -106.58 -0.58 -6.62 16 12 C 0.06 0.70 5.49 -3.83 -0.02 0.68 16 13 C -0.10 -1.40 5.48 -26.73 -0.15 -1.54 16 14 C -0.11 -2.16 5.67 37.16 0.21 -1.95 16 15 S -0.13 -3.38 21.44 -107.50 -2.30 -5.69 16 16 C -0.52 -14.62 9.50 30.94 0.29 -14.33 16 17 H 0.07 1.97 7.80 -52.48 -0.41 1.56 16 18 C 0.07 1.99 5.49 -17.43 -0.10 1.90 16 19 N -0.87 -25.74 13.22 55.49 0.73 -25.01 16 20 Si 0.92 21.30 29.55 -169.99 -5.02 16.27 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 24 H 0.06 0.48 6.53 -51.93 -0.34 0.14 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.08 0.53 6.90 -51.93 -0.36 0.17 16 27 H 0.40 2.77 8.80 -40.82 -0.36 2.41 16 28 H 0.10 0.73 8.14 -51.93 -0.42 0.30 16 29 H 0.10 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.08 0.65 6.40 -51.93 -0.33 0.32 16 31 H 0.08 0.67 7.38 -51.93 -0.38 0.28 16 32 H 0.34 2.73 7.65 -39.29 -0.30 2.43 16 33 H 0.07 0.83 7.39 -51.93 -0.38 0.45 16 34 H 0.03 0.34 8.06 -51.93 -0.42 -0.08 16 35 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.06 1.16 8.14 -51.92 -0.42 0.74 16 38 H 0.06 1.11 8.14 -51.91 -0.42 0.69 16 39 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 LS Contribution 327.49 15.07 4.94 4.94 Total: -1.00 -32.69 327.49 -8.84 -41.53 By element: Atomic # 1 Polarization: 6.53 SS G_CDS: -6.21 Total: 0.32 kcal Atomic # 6 Polarization: -11.70 SS G_CDS: -0.21 Total: -11.91 kcal Atomic # 7 Polarization: -37.35 SS G_CDS: -0.12 Total: -37.47 kcal Atomic # 8 Polarization: -8.09 SS G_CDS: 0.10 Total: -7.99 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.27 kcal Atomic # 16 Polarization: -3.38 SS G_CDS: -2.30 Total: -5.69 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -32.69 -8.84 -41.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309803174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.393 kcal (2) G-P(sol) polarization free energy of solvation -32.693 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.087 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.835 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds