Wall clock time and date at job start Mon Mar 30 2020 05:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09008 * 109.12455 * 2 1 4 4 N 1.45751 * 109.30076 * 119.47900 * 2 1 3 5 5 C 1.33357 * 124.10127 * 101.21928 * 4 2 1 6 6 O 1.21290 * 118.24273 * 182.26769 * 5 4 2 7 7 C 1.50167 * 123.51362 * 2.24173 * 5 4 2 8 8 C 1.53012 * 110.00674 * 342.53476 * 7 5 4 9 9 C 1.52922 * 109.30215 * 240.51993 * 2 1 3 10 10 H 1.08998 * 109.60187 * 170.51852 * 9 2 1 11 11 N 1.46903 * 109.60462 * 50.19493 * 9 2 1 12 12 C 1.46893 * 110.99924 * 155.32282 * 11 9 2 13 13 C 1.52996 * 109.47069 * 179.97438 * 12 11 9 14 14 C 1.53001 * 109.47486 * 180.02562 * 13 12 11 15 15 S 1.81000 * 109.47647 * 180.02562 * 14 13 12 16 16 C 1.76194 * 100.00068 * 180.02562 * 15 14 13 17 17 H 1.08006 * 120.00457 * 359.97438 * 16 15 14 18 18 C 1.38801 * 120.00163 * 180.02562 * 16 15 14 19 19 N 1.31640 * 119.99650 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 120.00461 * 179.97438 * 18 16 15 21 21 H 1.48505 * 109.46966 * 89.99788 * 20 18 16 22 22 H 1.48500 * 109.47223 * 209.99878 * 20 18 16 23 23 H 1.48501 * 109.47335 * 329.99952 * 20 18 16 24 24 H 1.09004 * 109.47308 * 179.48017 * 1 2 3 25 25 H 1.09002 * 109.47483 * 299.48260 * 1 2 3 26 26 H 1.09002 * 109.47069 * 59.47991 * 1 2 3 27 27 H 0.96997 * 117.94749 * 281.23612 * 4 2 1 28 28 H 1.09005 * 109.40063 * 102.54423 * 7 5 4 29 29 H 1.09000 * 109.40667 * 222.38022 * 7 5 4 30 30 H 1.09003 * 109.51027 * 288.97339 * 8 7 5 31 31 H 1.08995 * 109.80044 * 168.45886 * 8 7 5 32 32 H 1.00900 * 110.99399 * 31.37380 * 11 9 2 33 33 H 1.09001 * 109.47196 * 60.00007 * 12 11 9 34 34 H 1.09000 * 109.47767 * 300.00540 * 12 11 9 35 35 H 1.09001 * 109.46997 * 60.00578 * 13 12 11 36 36 H 1.08996 * 109.47452 * 300.00152 * 13 12 11 37 37 H 1.09001 * 109.47109 * 59.99943 * 14 13 12 38 38 H 1.09004 * 109.47086 * 300.00416 * 14 13 12 39 39 H 0.97001 * 119.99781 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8871 1.0299 0.0000 4 7 2.0117 -0.6769 1.1975 5 6 2.4616 -1.9322 1.2170 6 8 2.7984 -2.4047 2.2820 7 6 2.5731 -2.7921 -0.0091 8 6 1.7223 -2.2067 -1.1382 9 6 2.0354 -0.7103 -1.2564 10 1 3.1122 -0.5681 -1.3486 11 7 1.3622 -0.1578 -2.4395 12 6 2.1768 -0.3505 -3.6466 13 6 1.4442 0.2357 -4.8551 14 6 2.2923 0.0344 -6.1126 15 16 1.4260 0.7286 -7.5422 16 6 2.5930 0.3678 -8.8119 17 1 3.5148 -0.1404 -8.5698 18 6 2.3284 0.7377 -10.1233 19 7 1.2052 1.3576 -10.4184 20 14 3.5659 0.3559 -11.4694 21 1 3.2712 -0.9794 -12.0485 22 1 3.4744 1.3880 -12.5332 23 1 4.9360 0.3556 -10.8966 24 1 -0.3634 -1.0276 -0.0093 25 1 -0.3634 0.5058 0.8946 26 1 -0.3633 0.5219 -0.8853 27 1 2.0044 -0.1836 2.0326 28 1 3.6144 -2.8340 -0.3285 29 1 2.2242 -3.7987 0.2216 30 1 0.6660 -2.3434 -0.9064 31 1 1.9603 -2.7067 -2.0770 32 1 1.1387 0.8170 -2.3059 33 1 2.3446 -1.4158 -3.8055 34 1 3.1352 0.1535 -3.5226 35 1 1.2762 1.3009 -4.6965 36 1 0.4860 -0.2688 -4.9790 37 1 2.4600 -1.0309 -6.2710 38 1 3.2507 0.5387 -5.9889 39 1 1.0201 1.6157 -11.3349 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000309803174.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:22:04 Heat of formation + Delta-G solvation = -82.187357 kcal Electronic energy + Delta-G solvation = -18368.840903 eV Core-core repulsion = 15435.444220 eV Total energy + Delta-G solvation = -2933.396682 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.52661 -38.90569 -36.58624 -34.59943 -34.20279 -33.11514 -30.97584 -27.94372 -27.40700 -25.60771 -24.49808 -22.80648 -22.32603 -19.69964 -19.38609 -18.15766 -17.64888 -16.88342 -16.79163 -16.56203 -16.26969 -15.67892 -15.56828 -15.05888 -14.76300 -14.74060 -14.46440 -13.87540 -13.55890 -13.27734 -13.12816 -12.97977 -12.87764 -12.72826 -12.57643 -12.43834 -12.21087 -11.91061 -11.78173 -11.57656 -11.31735 -11.12978 -10.80286 -10.28852 -10.16069 -9.40107 -8.64063 -8.36352 -6.11781 1.32678 1.40000 1.49476 1.57166 1.77402 2.24938 2.30561 2.97980 3.04335 3.35213 3.52410 3.67700 3.81830 4.05633 4.09964 4.22108 4.31495 4.36261 4.40897 4.49371 4.55606 4.66605 4.81693 4.82964 4.87783 4.95423 4.98634 5.07502 5.22753 5.28838 5.37848 5.41043 5.49829 5.79671 5.99615 6.19215 6.30777 6.46804 7.06266 7.16628 8.72933 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.045266 B = 0.002745 C = 0.002639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 618.421904 B =10199.432845 C =10609.050662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.137 3.863 3 H 0.105 0.895 4 N -0.703 5.703 5 C 0.517 3.483 6 O -0.610 6.610 7 C -0.132 4.132 8 C -0.110 4.110 9 C 0.079 3.921 10 H 0.055 0.945 11 N -0.675 5.675 12 C 0.076 3.924 13 C -0.084 4.084 14 C -0.089 4.089 15 S -0.199 6.199 16 C -0.538 4.538 17 H 0.072 0.928 18 C 0.015 3.985 19 N -0.908 5.908 20 Si 0.993 3.007 21 H -0.268 1.268 22 H -0.275 1.275 23 H -0.263 1.263 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.084 0.916 27 H 0.404 0.596 28 H 0.109 0.891 29 H 0.107 0.893 30 H 0.077 0.923 31 H 0.081 0.919 32 H 0.352 0.648 33 H 0.074 0.926 34 H 0.037 0.963 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.060 0.940 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.177 -2.966 20.303 20.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.032 3.968 3 H 0.123 0.877 4 N -0.353 5.353 5 C 0.306 3.694 6 O -0.493 6.493 7 C -0.172 4.172 8 C -0.149 4.149 9 C -0.032 4.032 10 H 0.073 0.927 11 N -0.307 5.307 12 C -0.055 4.055 13 C -0.123 4.123 14 C -0.238 4.238 15 S 0.030 5.970 16 C -0.686 4.686 17 H 0.090 0.910 18 C -0.190 4.190 19 N -0.544 5.544 20 Si 0.815 3.185 21 H -0.193 1.193 22 H -0.200 1.200 23 H -0.187 1.187 24 H 0.072 0.928 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.240 0.760 28 H 0.127 0.873 29 H 0.125 0.875 30 H 0.096 0.904 31 H 0.099 0.901 32 H 0.172 0.828 33 H 0.093 0.907 34 H 0.055 0.945 35 H 0.084 0.916 36 H 0.086 0.914 37 H 0.080 0.920 38 H 0.079 0.921 39 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -0.158 -3.259 20.297 20.557 hybrid contribution 2.323 0.159 -0.520 2.385 sum 2.165 -3.100 19.777 20.135 Atomic orbital electron populations 1.22198 0.93547 1.02790 1.03176 1.21177 0.95675 0.96617 0.83323 0.87724 1.45521 1.63636 1.13370 1.12823 1.20655 0.75218 0.82539 0.91036 1.90742 1.52359 1.72750 1.33487 1.21641 1.03819 0.99653 0.92077 1.21680 1.00555 0.94447 0.98176 1.21724 0.96832 0.95373 0.89245 0.92705 1.60455 1.45236 1.23937 1.01121 1.21864 0.93968 1.01146 0.88524 1.21122 0.98496 1.01534 0.91105 1.23172 1.01404 1.02186 0.97058 1.84625 1.32280 1.78267 1.01852 1.23048 1.06326 1.44469 0.94715 0.90965 1.26058 0.98087 0.94188 1.00697 1.70157 1.25167 1.38519 1.20570 0.85034 0.78150 0.78335 0.77015 1.19344 1.19996 1.18705 0.92825 0.91816 0.89753 0.75992 0.87328 0.87505 0.90441 0.90073 0.82796 0.90723 0.94503 0.91564 0.91409 0.92012 0.92076 0.92001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.68 9.04 71.98 0.65 -1.03 16 2 C 0.14 1.44 3.33 45.11 0.15 1.59 16 3 H 0.10 0.75 8.14 -2.38 -0.02 0.73 16 4 N -0.70 -9.76 5.03 -446.64 -2.25 -12.01 16 5 C 0.52 10.09 7.72 87.71 0.68 10.77 16 6 O -0.61 -17.49 17.78 -3.06 -0.05 -17.55 16 7 C -0.13 -1.93 6.03 29.68 0.18 -1.75 16 8 C -0.11 -1.51 5.53 30.71 0.17 -1.34 16 9 C 0.08 1.02 2.25 45.00 0.10 1.12 16 10 H 0.06 0.74 7.79 -2.39 -0.02 0.73 16 11 N -0.67 -10.28 5.47 -491.12 -2.68 -12.96 16 12 C 0.08 1.51 5.49 86.30 0.47 1.99 16 13 C -0.08 -2.33 5.48 30.59 0.17 -2.16 16 14 C -0.09 -3.32 5.67 71.98 0.41 -2.92 16 15 S -0.20 -10.30 21.44 -56.49 -1.21 -11.51 16 16 C -0.54 -30.59 9.50 67.95 0.65 -29.95 16 17 H 0.07 3.95 7.80 -2.91 -0.02 3.93 16 18 C 0.01 0.82 5.49 84.86 0.47 1.29 16 19 N -0.91 -54.29 13.22 21.65 0.29 -54.00 16 20 Si 0.99 43.35 29.55 68.60 2.03 45.38 16 21 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 H -0.26 -10.96 7.11 99.48 0.71 -10.25 16 24 H 0.05 0.70 6.53 -2.38 -0.02 0.69 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.08 0.88 6.90 -2.39 -0.02 0.87 16 27 H 0.40 4.97 8.80 -92.71 -0.82 4.16 16 28 H 0.11 1.40 8.14 -2.38 -0.02 1.38 16 29 H 0.11 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.08 1.12 6.40 -2.39 -0.02 1.11 16 31 H 0.08 1.15 7.38 -2.39 -0.02 1.14 16 32 H 0.35 4.55 7.65 -89.69 -0.69 3.87 16 33 H 0.07 1.51 7.39 -2.39 -0.02 1.49 16 34 H 0.04 0.71 8.06 -2.39 -0.02 0.69 16 35 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 36 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 37 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 39 H 0.27 15.04 8.31 -92.71 -0.77 14.27 16 Total: -1.00 -71.12 327.49 -0.25 -71.36 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -0.45 Total: 13.69 kcal Atomic # 6 Polarization: -26.49 SS G_CDS: 4.09 Total: -22.40 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -4.65 Total: -78.98 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -0.05 Total: -17.55 kcal Atomic # 14 Polarization: 43.35 SS G_CDS: 2.03 Total: 45.38 kcal Atomic # 16 Polarization: -10.30 SS G_CDS: -1.21 Total: -11.51 kcal Total: -71.12 -0.25 -71.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000309803174.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.825 kcal (2) G-P(sol) polarization free energy of solvation -71.116 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds