Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00029 * 2 1 3 5 5 H 1.08004 * 119.99755 * 122.35220 * 4 2 1 6 6 C 1.37871 * 120.00183 * 302.07165 * 4 2 1 7 7 N 1.31518 * 119.99920 * 353.80887 * 6 4 2 8 8 Si 1.86803 * 120.00106 * 173.80777 * 6 4 2 9 9 H 1.48500 * 109.47348 * 94.99328 * 8 6 4 10 10 H 1.48503 * 109.47127 * 214.99257 * 8 6 4 11 11 H 1.48498 * 109.47068 * 334.99151 * 8 6 4 12 12 C 1.53001 * 109.47151 * 239.99948 * 2 1 3 13 13 N 1.46499 * 109.47247 * 60.00063 * 12 2 1 14 14 C 1.34775 * 120.00084 * 180.02562 * 13 12 2 15 15 O 1.21278 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99646 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.40542 * 319.84045 * 16 14 13 18 18 C 1.53247 * 109.40517 * 79.60544 * 16 14 13 19 19 S 1.81905 * 108.50276 * 182.11930 * 18 16 14 20 20 C 1.81896 * 101.91285 * 308.69317 * 19 18 16 21 21 C 1.53244 * 108.50666 * 51.30812 * 20 19 18 22 22 N 1.46468 * 109.40004 * 199.99971 * 16 14 13 23 23 H 1.09007 * 109.47336 * 299.99852 * 1 2 3 24 24 H 1.09003 * 109.47156 * 59.99853 * 1 2 3 25 25 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46902 * 174.12592 * 3 2 1 27 27 H 1.08993 * 109.47444 * 294.12663 * 3 2 1 28 28 H 1.08994 * 109.47375 * 54.13257 * 3 2 1 29 29 H 0.97004 * 119.99729 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47267 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.46950 * 299.99701 * 12 2 1 32 32 H 0.97002 * 119.99682 * 0.02562 * 13 12 2 33 33 H 1.09007 * 109.63125 * 301.82019 * 18 16 14 34 34 H 1.08994 * 109.63796 * 62.41623 * 18 16 14 35 35 H 1.08998 * 109.63240 * 291.59986 * 20 19 18 36 36 H 1.09005 * 109.63040 * 171.00882 * 20 19 18 37 37 H 1.09007 * 109.40701 * 177.87860 * 21 20 19 38 38 H 1.08999 * 109.41232 * 58.11441 * 21 20 19 39 39 H 1.00892 * 111.00397 * 42.11561 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6841 -1.5659 1.1318 6 6 1.6643 -0.2649 2.4822 7 7 0.9766 0.8492 2.6078 8 14 2.1424 -1.2435 3.9999 9 1 3.4024 -0.6970 4.5646 10 1 1.0617 -1.1443 5.0136 11 1 2.3431 -2.6671 3.6280 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5741 -1.4775 -3.7807 16 6 1.3750 0.2194 -4.9000 17 1 0.3428 0.5319 -4.7419 18 6 2.2441 1.4534 -5.1652 19 16 1.5795 2.3265 -6.6160 20 6 1.4599 0.9855 -7.8391 21 6 0.6988 -0.1841 -7.2058 22 7 1.4382 -0.6896 -6.0467 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1250 1.4442 0.1052 27 1 1.7651 1.9251 -0.9378 28 1 1.5934 1.9857 0.8327 29 1 0.7174 1.1624 3.4886 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 0.9943 0.7582 -2.3564 33 1 2.2184 2.1127 -4.2975 34 1 3.2701 1.1432 -5.3628 35 1 2.4602 0.6598 -8.1245 36 1 0.9219 1.3390 -8.7188 37 1 0.5857 -0.9824 -7.9394 38 1 -0.2866 0.1553 -6.8868 39 1 1.1245 -1.6143 -5.7929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000315427431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = -40.889600 kcal Electronic energy + Delta-G solvation = -19443.850250 eV Core-core repulsion = 16512.244372 eV Total energy + Delta-G solvation = -2931.605877 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -39.78430 -37.17202 -36.15373 -33.41278 -32.02720 -30.74636 -29.08757 -25.97182 -25.77873 -25.21909 -23.82068 -21.94400 -20.02869 -18.85898 -17.86946 -16.43006 -16.36003 -15.75611 -15.46530 -14.91680 -14.66678 -14.50463 -13.97144 -13.65053 -13.47135 -13.12559 -12.93573 -12.60552 -12.52573 -12.23533 -11.84125 -11.53689 -11.45338 -11.22462 -10.90194 -10.71173 -10.43437 -10.25376 -10.12978 -9.68042 -9.54892 -9.25241 -8.85015 -8.83221 -8.52232 -8.36231 -7.88832 -6.06130 -4.14904 1.54706 2.21853 2.90741 3.25866 3.33516 3.35625 3.41125 3.94520 4.37732 4.58167 4.61901 4.86077 4.96630 4.97154 5.04066 5.21223 5.21675 5.35654 5.55374 5.67687 6.14774 6.26144 6.44680 6.60972 6.70376 6.76588 6.87373 6.93290 6.96531 7.02261 7.30298 7.50873 7.66268 7.94130 7.94937 8.09515 8.33489 8.56455 8.85227 9.50749 10.95886 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040745 B = 0.003889 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.037822 B = 7197.772622 C = 7518.021600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.055 3.945 3 C -0.129 4.129 4 C -0.509 4.509 5 H 0.058 0.942 6 C 0.068 3.932 7 N -0.884 5.884 8 Si 0.892 3.108 9 H -0.282 1.282 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.132 3.868 13 N -0.713 5.713 14 C 0.506 3.494 15 O -0.533 6.533 16 C 0.074 3.926 17 H 0.072 0.928 18 C -0.065 4.065 19 S -0.264 6.264 20 C -0.080 4.080 21 C 0.059 3.941 22 N -0.681 5.681 23 H 0.083 0.917 24 H 0.007 0.993 25 H 0.027 0.973 26 H 0.029 0.971 27 H 0.004 0.996 28 H 0.084 0.916 29 H 0.260 0.740 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.398 0.602 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.107 0.893 37 H 0.088 0.912 38 H 0.047 0.953 39 H 0.361 0.639 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.581 1.896 -16.635 16.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.055 3.945 3 C -0.186 4.186 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.720 3.280 9 H -0.208 1.208 10 H -0.212 1.212 11 H -0.198 1.198 12 C 0.010 3.990 13 N -0.364 5.364 14 C 0.288 3.712 15 O -0.410 6.410 16 C -0.041 4.041 17 H 0.090 0.910 18 C -0.214 4.214 19 S -0.036 6.036 20 C -0.229 4.229 21 C -0.071 4.071 22 N -0.316 5.316 23 H 0.101 0.899 24 H 0.026 0.974 25 H 0.046 0.954 26 H 0.048 0.952 27 H 0.023 0.977 28 H 0.103 0.897 29 H 0.070 0.930 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.234 0.766 33 H 0.131 0.869 34 H 0.117 0.883 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.107 0.893 38 H 0.066 0.934 39 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges -1.839 2.651 -16.886 17.192 hybrid contribution -0.560 -1.458 1.330 2.052 sum -2.399 1.192 -15.556 15.785 Atomic orbital electron populations 1.21807 0.97804 0.99143 1.00008 1.18367 0.92720 0.92856 0.90579 1.21851 0.99446 0.98379 0.98967 1.20963 1.30008 1.13868 0.89864 0.92413 1.24871 0.94949 0.94740 0.98819 1.69838 1.38776 1.20389 1.23249 0.86578 0.78080 0.80657 0.82703 1.20790 1.21186 1.19831 1.21745 0.98270 0.95780 0.83226 1.46349 1.52423 1.31718 1.05886 1.20220 0.81488 0.85016 0.84445 1.90697 1.37463 1.26263 1.86562 1.21601 0.99199 0.93093 0.90253 0.91011 1.23443 1.02372 0.97231 0.98385 1.86949 1.85869 1.19188 1.11640 1.23561 1.04831 0.95767 0.98720 1.22083 0.94713 0.97233 0.93118 1.59284 1.61135 1.05930 1.05244 0.89868 0.97428 0.95386 0.95194 0.97706 0.89691 0.93006 0.92561 0.92601 0.76628 0.86871 0.88320 0.88882 0.87496 0.89328 0.93437 0.81688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.84 8.06 37.16 0.30 -2.54 16 2 C 0.06 1.25 0.50 -155.66 -0.08 1.17 16 3 C -0.13 -2.83 8.08 37.16 0.30 -2.53 16 4 C -0.51 -13.10 8.01 -34.44 -0.28 -13.37 16 5 H 0.06 1.51 7.75 -52.48 -0.41 1.10 16 6 C 0.07 1.76 5.13 -17.82 -0.09 1.67 16 7 N -0.88 -23.25 9.46 55.43 0.52 -22.73 16 8 Si 0.89 20.49 29.54 -169.99 -5.02 15.46 16 9 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 12 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 13 N -0.71 -11.97 4.91 -60.29 -0.30 -12.26 16 14 C 0.51 8.24 6.92 -10.98 -0.08 8.16 16 15 O -0.53 -10.62 16.30 5.56 0.09 -10.53 16 16 C 0.07 0.93 2.72 -68.97 -0.19 0.74 16 17 H 0.07 0.83 7.91 -51.93 -0.41 0.42 16 18 C -0.07 -0.79 5.95 37.29 0.22 -0.56 16 19 S -0.26 -2.96 22.40 -107.50 -2.41 -5.36 16 20 C -0.08 -0.71 6.69 37.28 0.25 -0.46 16 21 C 0.06 0.52 6.39 -3.93 -0.03 0.50 16 22 N -0.68 -7.93 6.01 -108.29 -0.65 -8.58 16 23 H 0.08 2.02 6.15 -51.93 -0.32 1.70 16 24 H 0.01 0.13 6.86 -51.93 -0.36 -0.23 16 25 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 26 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 27 H 0.00 0.08 6.71 -51.93 -0.35 -0.27 16 28 H 0.08 2.07 6.20 -51.93 -0.32 1.75 16 29 H 0.26 6.61 8.31 -40.82 -0.34 6.27 16 30 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.40 6.07 6.16 -40.82 -0.25 5.82 16 33 H 0.11 1.30 8.14 -51.92 -0.42 0.88 16 34 H 0.10 1.29 8.14 -51.93 -0.42 0.87 16 35 H 0.09 0.86 8.14 -51.93 -0.42 0.43 16 36 H 0.11 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 38 H 0.05 0.41 7.91 -51.93 -0.41 0.00 16 39 H 0.36 4.27 8.31 -39.30 -0.33 3.94 16 LS Contribution 318.44 15.07 4.80 4.80 Total: -1.00 -27.94 318.44 -8.74 -36.67 By element: Atomic # 1 Polarization: 13.16 SS G_CDS: -6.09 Total: 7.06 kcal Atomic # 6 Polarization: -4.86 SS G_CDS: 0.32 Total: -4.54 kcal Atomic # 7 Polarization: -43.15 SS G_CDS: -0.42 Total: -43.57 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.09 Total: -10.53 kcal Atomic # 14 Polarization: 20.49 SS G_CDS: -5.02 Total: 15.46 kcal Atomic # 16 Polarization: -2.96 SS G_CDS: -2.41 Total: -5.36 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -27.94 -8.74 -36.67 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315427431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.217 kcal (2) G-P(sol) polarization free energy of solvation -27.936 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.672 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds