Wall clock time and date at job start Mon Mar 30 2020 05:01:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47107 * 2 1 4 4 C 1.50700 * 109.46897 * 120.00029 * 2 1 3 5 5 H 1.08004 * 119.99755 * 122.35220 * 4 2 1 6 6 C 1.37871 * 120.00183 * 302.07165 * 4 2 1 7 7 N 1.31518 * 119.99920 * 353.80887 * 6 4 2 8 8 Si 1.86803 * 120.00106 * 173.80777 * 6 4 2 9 9 H 1.48500 * 109.47348 * 94.99328 * 8 6 4 10 10 H 1.48503 * 109.47127 * 214.99257 * 8 6 4 11 11 H 1.48498 * 109.47068 * 334.99151 * 8 6 4 12 12 C 1.53001 * 109.47151 * 239.99948 * 2 1 3 13 13 N 1.46499 * 109.47247 * 60.00063 * 12 2 1 14 14 C 1.34775 * 120.00084 * 180.02562 * 13 12 2 15 15 O 1.21278 * 119.99843 * 359.97438 * 14 13 12 16 16 C 1.50704 * 119.99646 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.40542 * 319.84045 * 16 14 13 18 18 C 1.53247 * 109.40517 * 79.60544 * 16 14 13 19 19 S 1.81905 * 108.50276 * 182.11930 * 18 16 14 20 20 C 1.81896 * 101.91285 * 308.69317 * 19 18 16 21 21 C 1.53244 * 108.50666 * 51.30812 * 20 19 18 22 22 N 1.46468 * 109.40004 * 199.99971 * 16 14 13 23 23 H 1.09007 * 109.47336 * 299.99852 * 1 2 3 24 24 H 1.09003 * 109.47156 * 59.99853 * 1 2 3 25 25 H 1.09001 * 109.47011 * 179.97438 * 1 2 3 26 26 H 1.09010 * 109.46902 * 174.12592 * 3 2 1 27 27 H 1.08993 * 109.47444 * 294.12663 * 3 2 1 28 28 H 1.08994 * 109.47375 * 54.13257 * 3 2 1 29 29 H 0.97004 * 119.99729 * 179.97438 * 7 6 4 30 30 H 1.09006 * 109.47267 * 180.02562 * 12 2 1 31 31 H 1.09002 * 109.46950 * 299.99701 * 12 2 1 32 32 H 0.97002 * 119.99682 * 0.02562 * 13 12 2 33 33 H 1.09007 * 109.63125 * 301.82019 * 18 16 14 34 34 H 1.08994 * 109.63796 * 62.41623 * 18 16 14 35 35 H 1.08998 * 109.63240 * 291.59986 * 20 19 18 36 36 H 1.09005 * 109.63040 * 171.00882 * 20 19 18 37 37 H 1.09007 * 109.40701 * 177.87860 * 21 20 19 38 38 H 1.08999 * 109.41232 * 58.11441 * 21 20 19 39 39 H 1.00892 * 111.00397 * 42.11561 * 22 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0322 -0.7104 1.2305 5 1 2.6841 -1.5659 1.1318 6 6 1.6643 -0.2649 2.4822 7 7 0.9766 0.8492 2.6078 8 14 2.1424 -1.2435 3.9999 9 1 3.4024 -0.6970 4.5646 10 1 1.0617 -1.1443 5.0136 11 1 2.3431 -2.6671 3.6280 12 6 2.0400 -0.7213 -1.2492 13 7 1.5517 -0.0307 -2.4454 14 6 1.8769 -0.4915 -3.6695 15 8 2.5741 -1.4775 -3.7807 16 6 1.3750 0.2194 -4.9000 17 1 0.3428 0.5319 -4.7419 18 6 2.2441 1.4534 -5.1652 19 16 1.5795 2.3265 -6.6160 20 6 1.4599 0.9855 -7.8391 21 6 0.6988 -0.1841 -7.2058 22 7 1.4382 -0.6896 -6.0467 23 1 -0.3634 0.5138 0.8900 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 3.1250 1.4442 0.1052 27 1 1.7651 1.9251 -0.9378 28 1 1.5934 1.9857 0.8327 29 1 0.7174 1.1624 3.4886 30 1 3.1300 -0.7217 -1.2490 31 1 1.6767 -1.7490 -1.2492 32 1 0.9943 0.7582 -2.3564 33 1 2.2184 2.1127 -4.2975 34 1 3.2701 1.1432 -5.3628 35 1 2.4602 0.6598 -8.1245 36 1 0.9219 1.3390 -8.7188 37 1 0.5857 -0.9824 -7.9394 38 1 -0.2866 0.1553 -6.8868 39 1 1.1245 -1.6143 -5.7929 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000315427431.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:01:58 Heat of formation + Delta-G solvation = -59.430901 kcal Electronic energy + Delta-G solvation = -19444.654261 eV Core-core repulsion = 16512.244372 eV Total energy + Delta-G solvation = -2932.409888 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.10414 -38.49602 -37.52585 -35.05247 -33.21774 -32.30033 -29.93949 -27.59739 -27.56876 -27.02992 -24.94806 -22.87739 -21.28639 -20.60518 -19.04065 -17.86863 -17.41459 -17.26561 -16.76972 -16.30335 -16.08360 -15.76760 -15.09522 -14.87065 -14.73507 -14.45911 -14.22719 -14.00658 -13.89636 -13.32743 -13.22775 -13.08401 -12.72356 -12.66767 -12.59202 -12.42236 -12.25032 -12.13810 -11.48803 -11.30043 -11.02844 -10.74183 -10.55280 -10.38556 -9.98834 -9.68931 -8.75618 -8.03495 -6.17618 0.69183 1.33312 1.41644 1.45571 1.53911 1.66939 2.16822 2.47316 2.98511 3.20829 3.62209 3.76330 3.86341 3.98198 4.22965 4.28607 4.39901 4.42809 4.50609 4.67647 4.71632 4.73887 4.92153 4.98768 5.04847 5.09266 5.18426 5.33698 5.55693 5.66288 5.68394 5.77352 6.13658 6.14858 6.20773 6.42311 6.61066 6.86296 7.23085 7.49811 8.95963 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.040745 B = 0.003889 C = 0.003723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 687.037822 B = 7197.772622 C = 7518.021600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.050 3.950 3 C -0.118 4.118 4 C -0.530 4.530 5 H 0.044 0.956 6 C 0.030 3.970 7 N -0.898 5.898 8 Si 0.942 3.058 9 H -0.281 1.281 10 H -0.282 1.282 11 H -0.275 1.275 12 C 0.149 3.851 13 N -0.706 5.706 14 C 0.509 3.491 15 O -0.571 6.571 16 C 0.087 3.913 17 H 0.089 0.911 18 C -0.064 4.064 19 S -0.278 6.278 20 C -0.074 4.074 21 C 0.060 3.940 22 N -0.694 5.694 23 H 0.058 0.942 24 H 0.039 0.961 25 H 0.020 0.980 26 H 0.016 0.984 27 H 0.037 0.963 28 H 0.061 0.939 29 H 0.260 0.740 30 H 0.039 0.961 31 H 0.041 0.959 32 H 0.409 0.591 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.089 0.911 36 H 0.132 0.868 37 H 0.113 0.887 38 H 0.055 0.945 39 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.460 2.293 -18.273 18.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.050 3.950 3 C -0.176 4.176 4 C -0.569 4.569 5 H 0.063 0.937 6 C -0.170 4.170 7 N -0.536 5.536 8 Si 0.769 3.231 9 H -0.207 1.207 10 H -0.208 1.208 11 H -0.200 1.200 12 C 0.025 3.975 13 N -0.358 5.358 14 C 0.294 3.706 15 O -0.450 6.450 16 C -0.028 4.028 17 H 0.107 0.893 18 C -0.213 4.213 19 S -0.051 6.051 20 C -0.223 4.223 21 C -0.070 4.070 22 N -0.329 5.329 23 H 0.077 0.923 24 H 0.057 0.943 25 H 0.039 0.961 26 H 0.035 0.965 27 H 0.055 0.945 28 H 0.080 0.920 29 H 0.069 0.931 30 H 0.057 0.943 31 H 0.060 0.940 32 H 0.246 0.754 33 H 0.135 0.865 34 H 0.102 0.898 35 H 0.108 0.892 36 H 0.150 0.850 37 H 0.131 0.869 38 H 0.073 0.927 39 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -2.734 3.073 -18.542 18.993 hybrid contribution -0.273 -1.591 1.761 2.389 sum -3.007 1.483 -16.781 17.113 Atomic orbital electron populations 1.21645 0.97033 0.98745 1.00321 1.18369 0.93274 0.93044 0.90357 1.21683 0.98295 0.97916 0.99701 1.21263 1.30130 1.13900 0.91588 0.93737 1.25428 0.95173 0.95520 1.00865 1.69940 1.39140 1.20959 1.23574 0.85790 0.77764 0.79385 0.80136 1.20696 1.20787 1.20006 1.21273 0.97078 0.95134 0.84010 1.46151 1.52567 1.31844 1.05209 1.20854 0.80362 0.84367 0.85064 1.90681 1.39106 1.28078 1.87115 1.21491 0.99779 0.92835 0.88678 0.89319 1.23364 1.01505 0.97121 0.99340 1.87022 1.85590 1.20548 1.11895 1.23687 1.05151 0.94788 0.98628 1.22200 0.94477 0.97890 0.92409 1.59317 1.62255 1.05799 1.05538 0.92292 0.94258 0.96082 0.96476 0.94454 0.91986 0.93066 0.94282 0.94036 0.75399 0.86478 0.89752 0.89234 0.84979 0.86945 0.92717 0.81883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.13 8.06 71.98 0.58 -4.55 16 2 C 0.05 2.26 0.50 -52.93 -0.03 2.23 16 3 C -0.12 -5.13 8.08 71.98 0.58 -4.55 16 4 C -0.53 -27.65 8.01 25.60 0.20 -27.44 16 5 H 0.04 2.38 7.75 -2.91 -0.02 2.35 16 6 C 0.03 1.57 5.13 84.65 0.43 2.01 16 7 N -0.90 -47.36 9.46 21.45 0.20 -47.16 16 8 Si 0.94 42.22 29.54 68.60 2.03 44.25 16 9 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 10 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 11 H -0.28 -12.30 7.11 99.48 0.71 -11.59 16 12 C 0.15 6.10 4.50 86.38 0.39 6.49 16 13 N -0.71 -22.84 4.91 -463.05 -2.27 -25.11 16 14 C 0.51 16.04 6.92 87.66 0.61 16.64 16 15 O -0.57 -22.62 16.30 -3.02 -0.05 -22.67 16 16 C 0.09 2.02 2.72 44.34 0.12 2.14 16 17 H 0.09 1.79 7.91 -2.39 -0.02 1.77 16 18 C -0.06 -1.44 5.95 72.06 0.43 -1.01 16 19 S -0.28 -5.60 22.40 -56.49 -1.27 -6.86 16 20 C -0.07 -1.09 6.69 72.06 0.48 -0.60 16 21 C 0.06 0.86 6.39 86.47 0.55 1.42 16 22 N -0.69 -14.73 6.01 -496.53 -2.98 -17.71 16 23 H 0.06 2.84 6.15 -2.38 -0.01 2.82 16 24 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 25 H 0.02 0.88 8.14 -2.39 -0.02 0.87 16 26 H 0.02 0.74 8.14 -2.38 -0.02 0.72 16 27 H 0.04 1.33 6.71 -2.39 -0.02 1.31 16 28 H 0.06 3.00 6.20 -2.39 -0.01 2.99 16 29 H 0.26 13.23 8.31 -92.71 -0.77 12.46 16 30 H 0.04 1.72 8.14 -2.38 -0.02 1.70 16 31 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 32 H 0.41 11.50 6.16 -92.71 -0.57 10.93 16 33 H 0.12 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.13 1.30 8.14 -2.38 -0.02 1.28 16 37 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 38 H 0.05 0.75 7.91 -2.39 -0.02 0.73 16 39 H 0.36 7.89 8.31 -89.70 -0.75 7.14 16 Total: -1.00 -59.96 318.44 -0.25 -60.21 By element: Atomic # 1 Polarization: 22.55 SS G_CDS: -0.26 Total: 22.29 kcal Atomic # 6 Polarization: -11.59 SS G_CDS: 4.35 Total: -7.24 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -5.05 Total: -89.98 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -0.05 Total: -22.67 kcal Atomic # 14 Polarization: 42.22 SS G_CDS: 2.03 Total: 44.25 kcal Atomic # 16 Polarization: -5.60 SS G_CDS: -1.27 Total: -6.86 kcal Total: -59.96 -0.25 -60.21 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000315427431.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.783 kcal (2) G-P(sol) polarization free energy of solvation -59.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.180 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds