Wall clock time and date at job start Mon Mar 30 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.28555 * 2 1 4 4 C 1.52980 * 109.37434 * 119.71166 * 2 1 3 5 5 N 1.47186 * 108.73132 * 170.46756 * 4 2 1 6 6 C 1.46894 * 111.00121 * 54.36331 * 5 4 2 7 7 C 1.53011 * 109.47154 * 183.56456 * 6 5 4 8 8 C 1.53000 * 109.47221 * 185.60906 * 7 6 5 9 9 S 1.80997 * 109.47050 * 180.02562 * 8 7 6 10 10 C 1.76204 * 100.00031 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99436 * 359.97438 * 10 9 8 12 12 C 1.38790 * 120.00007 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99996 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00223 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47013 * 90.00462 * 14 12 10 16 16 H 1.48500 * 109.47168 * 210.00495 * 14 12 10 17 17 H 1.48499 * 109.47112 * 330.00152 * 14 12 10 18 18 C 1.46909 * 110.17418 * 290.99797 * 5 4 2 19 19 C 1.50242 * 110.02848 * 50.09932 * 18 5 4 20 20 O 1.21279 * 118.61262 * 162.99796 * 19 18 5 21 21 N 1.33716 * 122.76558 * 343.25130 * 19 18 5 22 22 C 1.46492 * 118.53950 * 181.45747 * 21 19 18 23 23 H 1.08992 * 109.47331 * 179.70776 * 1 2 3 24 24 H 1.09004 * 109.47026 * 299.71178 * 1 2 3 25 25 H 1.09006 * 109.46832 * 59.71007 * 1 2 3 26 26 H 1.09004 * 109.59394 * 290.23880 * 4 2 1 27 27 H 1.09002 * 109.60050 * 50.53625 * 4 2 1 28 28 H 1.08995 * 109.47289 * 303.56662 * 6 5 4 29 29 H 1.08995 * 109.47231 * 63.57030 * 6 5 4 30 30 H 1.08999 * 109.46849 * 305.61164 * 7 6 5 31 31 H 1.09004 * 109.46454 * 65.61154 * 7 6 5 32 32 H 1.08998 * 109.47002 * 300.00561 * 8 7 6 33 33 H 1.09004 * 109.46787 * 59.99848 * 8 7 6 34 34 H 0.96996 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.38983 * 170.45342 * 18 5 4 36 36 H 1.09006 * 109.38136 * 290.14460 * 18 5 4 37 37 H 1.08994 * 109.47268 * 269.72969 * 22 21 19 38 38 H 1.08997 * 109.47367 * 29.73325 * 22 21 19 39 39 H 1.09008 * 109.47124 * 149.72991 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8900 1.0288 0.0000 4 6 2.0375 -0.7153 1.2534 5 7 3.4911 -0.9108 1.1302 6 6 4.1728 0.3628 0.8638 7 6 5.6669 0.1075 0.6542 8 6 6.3982 1.4443 0.5159 9 16 8.1654 1.1422 0.2673 10 6 8.7451 2.8016 0.1439 11 1 8.0496 3.6239 0.2245 12 6 10.0952 3.0518 -0.0581 13 7 10.5282 4.2915 -0.1508 14 14 11.2981 1.6295 -0.1984 15 1 11.4158 1.2193 -1.6207 16 1 12.6285 2.0547 0.3060 17 1 10.8061 0.4838 0.6082 18 6 3.7827 -1.8941 0.0784 19 6 3.0433 -1.5365 -1.1796 20 8 3.3974 -2.0402 -2.2245 21 7 2.0144 -0.6827 -1.1964 22 6 1.3393 -0.4252 -2.4707 23 1 -0.3633 -1.0276 -0.0052 24 1 -0.3633 0.5094 0.8926 25 1 -0.3633 0.5184 -0.8874 26 1 1.8236 -0.1078 2.1329 27 1 1.5431 -1.6821 1.3482 28 1 3.7530 0.8191 -0.0326 29 1 4.0344 1.0334 1.7118 30 1 6.0657 -0.4380 1.5095 31 1 5.8112 -0.4811 -0.2518 32 1 5.9993 1.9899 -0.3393 33 1 6.2537 2.0329 1.4219 34 1 11.4718 4.4663 -0.2915 35 1 4.8545 -1.9050 -0.1196 36 1 3.4676 -2.8833 0.4106 37 1 1.8160 0.4179 -2.9706 38 1 1.4088 -1.3097 -3.1040 39 1 0.2906 -0.1923 -2.2858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337471403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:41 Heat of formation + Delta-G solvation = -27.735836 kcal Electronic energy + Delta-G solvation = -19204.039150 eV Core-core repulsion = 16273.003663 eV Total energy + Delta-G solvation = -2931.035487 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.16457 -37.82726 -36.19956 -33.09320 -32.42761 -31.67574 -28.49547 -27.63983 -26.37485 -25.59420 -23.21476 -22.60479 -21.35236 -18.51500 -17.55739 -17.12725 -16.90836 -16.11501 -15.76399 -15.30153 -14.96488 -14.89351 -14.06978 -14.03292 -13.72544 -13.39194 -13.03932 -12.84485 -12.59716 -12.35455 -12.25597 -12.11315 -11.82020 -11.69832 -11.62847 -11.33783 -11.04768 -10.96556 -10.60596 -10.33952 -10.16692 -9.77268 -9.00339 -8.99449 -8.55875 -8.48475 -6.93339 -6.27626 -3.99903 2.44559 2.65448 3.00483 3.32175 3.47120 3.51767 3.71034 4.12199 4.32962 4.42663 4.48856 4.63356 4.78668 4.90884 4.92017 5.04352 5.10983 5.12827 5.26324 5.27652 5.30966 5.38055 5.42139 5.50377 5.55158 5.62303 5.69720 5.76835 5.90799 6.08454 6.16146 6.39214 6.54427 6.61114 6.73431 7.17082 7.95043 7.96157 8.44514 9.18445 10.81881 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003874 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.995910 B = 7225.311416 C = 7362.326615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.099 3.901 3 H 0.080 0.920 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.048 3.952 7 C -0.104 4.104 8 C -0.081 4.081 9 S -0.213 6.213 10 C -0.503 4.503 11 H 0.087 0.913 12 C 0.092 3.908 13 N -0.882 5.882 14 Si 0.861 3.139 15 H -0.269 1.269 16 H -0.276 1.276 17 H -0.237 1.237 18 C 0.031 3.969 19 C 0.486 3.514 20 O -0.547 6.547 21 N -0.606 5.606 22 C 0.072 3.928 23 H 0.063 0.937 24 H 0.074 0.926 25 H 0.065 0.935 26 H 0.100 0.900 27 H 0.086 0.914 28 H 0.041 0.959 29 H 0.084 0.916 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.270 0.730 35 H 0.124 0.876 36 H 0.111 0.889 37 H 0.055 0.945 38 H 0.077 0.923 39 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.940 -10.086 2.576 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.006 4.006 3 H 0.098 0.902 4 C -0.086 4.086 5 N -0.245 5.245 6 C -0.081 4.081 7 C -0.143 4.143 8 C -0.230 4.230 9 S 0.015 5.985 10 C -0.650 4.650 11 H 0.106 0.894 12 C -0.116 4.116 13 N -0.519 5.519 14 Si 0.686 3.314 15 H -0.194 1.194 16 H -0.201 1.201 17 H -0.161 1.161 18 C -0.099 4.099 19 C 0.273 3.727 20 O -0.423 6.423 21 N -0.341 5.341 22 C -0.070 4.070 23 H 0.082 0.918 24 H 0.093 0.907 25 H 0.084 0.916 26 H 0.118 0.882 27 H 0.104 0.896 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.098 0.902 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.080 0.920 35 H 0.141 0.859 36 H 0.128 0.872 37 H 0.073 0.927 38 H 0.096 0.904 39 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -20.801 -11.385 2.415 23.835 hybrid contribution -0.362 1.304 -0.882 1.615 sum -21.163 -10.081 1.534 23.491 Atomic orbital electron populations 1.22156 0.93924 1.02910 1.03057 1.21782 0.95519 0.97547 0.85767 0.90206 1.22661 0.87986 1.01714 0.96266 1.62640 1.07906 1.10548 1.43417 1.22380 0.94717 0.90148 1.00819 1.21466 0.92466 0.97409 1.02957 1.22978 0.97840 0.98679 1.03483 1.84182 1.02635 1.16102 1.95586 1.22121 0.96909 0.88959 1.57020 0.89449 1.24788 0.97534 0.95913 0.93367 1.69941 1.15852 1.18634 1.47499 0.86674 0.80978 0.83619 0.80113 1.19364 1.20083 1.16111 1.22630 1.02886 0.97978 0.86443 1.21353 0.80299 0.78467 0.92554 1.90723 1.65317 1.52720 1.33576 1.47495 1.32700 1.44600 1.09307 1.21758 0.97155 1.02453 0.85646 0.91841 0.90705 0.91574 0.88209 0.89605 0.94119 0.89719 0.90151 0.91473 0.91719 0.91199 0.91981 0.85854 0.87153 0.92661 0.90435 0.90763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 8.59 37.16 0.32 -0.54 16 2 C 0.10 0.78 2.59 -68.20 -0.18 0.60 16 3 H 0.08 0.67 6.80 -51.93 -0.35 0.32 16 4 C 0.04 0.32 5.35 -3.68 -0.02 0.30 16 5 N -0.52 -5.42 5.13 -236.11 -1.21 -6.64 16 6 C 0.05 0.58 4.51 -3.82 -0.02 0.56 16 7 C -0.10 -1.59 4.61 -26.73 -0.12 -1.71 16 8 C -0.08 -1.56 5.67 37.16 0.21 -1.35 16 9 S -0.21 -5.25 19.41 -107.50 -2.09 -7.34 16 10 C -0.50 -14.72 10.04 30.94 0.31 -14.41 16 11 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 12 C 0.09 2.72 5.50 -17.43 -0.10 2.63 16 13 N -0.88 -26.98 13.97 55.49 0.78 -26.21 16 14 Si 0.86 21.82 27.74 -169.99 -4.71 17.10 16 15 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 16 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 17 H -0.24 -5.88 6.74 56.52 0.38 -5.50 16 18 C 0.03 0.36 5.63 -5.19 -0.03 0.33 16 19 C 0.49 6.49 7.01 -11.68 -0.08 6.41 16 20 O -0.55 -9.45 16.33 5.56 0.09 -9.36 16 21 N -0.61 -6.49 2.93 -174.82 -0.51 -7.01 16 22 C 0.07 0.69 10.05 59.84 0.60 1.29 16 23 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 24 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 25 H 0.07 0.34 6.31 -51.93 -0.33 0.01 16 26 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.09 0.58 8.06 -51.93 -0.42 0.16 16 28 H 0.04 0.51 5.75 -51.93 -0.30 0.21 16 29 H 0.08 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.08 6.39 -51.93 -0.33 0.75 16 32 H 0.06 1.27 8.14 -51.92 -0.42 0.85 16 33 H 0.07 1.33 8.14 -51.91 -0.42 0.90 16 34 H 0.27 7.66 8.31 -40.82 -0.34 7.33 16 35 H 0.12 1.55 5.62 -51.93 -0.29 1.26 16 36 H 0.11 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.84 7.25 -51.93 -0.38 0.47 16 39 H 0.07 0.50 5.51 -51.92 -0.29 0.21 16 LS Contribution 317.33 15.07 4.78 4.78 Total: -1.00 -33.88 317.33 -8.05 -41.93 By element: Atomic # 1 Polarization: 4.70 SS G_CDS: -6.07 Total: -1.37 kcal Atomic # 6 Polarization: -6.80 SS G_CDS: 0.90 Total: -5.90 kcal Atomic # 7 Polarization: -38.90 SS G_CDS: -0.95 Total: -39.85 kcal Atomic # 8 Polarization: -9.45 SS G_CDS: 0.09 Total: -9.36 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -4.71 Total: 17.10 kcal Atomic # 16 Polarization: -5.25 SS G_CDS: -2.09 Total: -7.34 kcal Total LS contribution 4.78 Total: 4.78 kcal Total: -33.88 -8.05 -41.93 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337471403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.193 kcal (2) G-P(sol) polarization free energy of solvation -33.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.929 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds