Wall clock time and date at job start Mon Mar 30 2020 05:23:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.28555 * 2 1 4 4 C 1.52980 * 109.37434 * 119.71166 * 2 1 3 5 5 N 1.47186 * 108.73132 * 170.46756 * 4 2 1 6 6 C 1.46894 * 111.00121 * 54.36331 * 5 4 2 7 7 C 1.53011 * 109.47154 * 183.56456 * 6 5 4 8 8 C 1.53000 * 109.47221 * 185.60906 * 7 6 5 9 9 S 1.80997 * 109.47050 * 180.02562 * 8 7 6 10 10 C 1.76204 * 100.00031 * 180.02562 * 9 8 7 11 11 H 1.07999 * 119.99436 * 359.97438 * 10 9 8 12 12 C 1.38790 * 120.00007 * 180.02562 * 10 9 8 13 13 N 1.31637 * 119.99996 * 179.97438 * 12 10 9 14 14 Si 1.86802 * 120.00223 * 359.97438 * 12 10 9 15 15 H 1.48497 * 109.47013 * 90.00462 * 14 12 10 16 16 H 1.48500 * 109.47168 * 210.00495 * 14 12 10 17 17 H 1.48499 * 109.47112 * 330.00152 * 14 12 10 18 18 C 1.46909 * 110.17418 * 290.99797 * 5 4 2 19 19 C 1.50242 * 110.02848 * 50.09932 * 18 5 4 20 20 O 1.21279 * 118.61262 * 162.99796 * 19 18 5 21 21 N 1.33716 * 122.76558 * 343.25130 * 19 18 5 22 22 C 1.46492 * 118.53950 * 181.45747 * 21 19 18 23 23 H 1.08992 * 109.47331 * 179.70776 * 1 2 3 24 24 H 1.09004 * 109.47026 * 299.71178 * 1 2 3 25 25 H 1.09006 * 109.46832 * 59.71007 * 1 2 3 26 26 H 1.09004 * 109.59394 * 290.23880 * 4 2 1 27 27 H 1.09002 * 109.60050 * 50.53625 * 4 2 1 28 28 H 1.08995 * 109.47289 * 303.56662 * 6 5 4 29 29 H 1.08995 * 109.47231 * 63.57030 * 6 5 4 30 30 H 1.08999 * 109.46849 * 305.61164 * 7 6 5 31 31 H 1.09004 * 109.46454 * 65.61154 * 7 6 5 32 32 H 1.08998 * 109.47002 * 300.00561 * 8 7 6 33 33 H 1.09004 * 109.46787 * 59.99848 * 8 7 6 34 34 H 0.96996 * 119.99684 * 179.97438 * 13 12 10 35 35 H 1.08994 * 109.38983 * 170.45342 * 18 5 4 36 36 H 1.09006 * 109.38136 * 290.14460 * 18 5 4 37 37 H 1.08994 * 109.47268 * 269.72969 * 22 21 19 38 38 H 1.08997 * 109.47367 * 29.73325 * 22 21 19 39 39 H 1.09008 * 109.47124 * 149.72991 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8900 1.0288 0.0000 4 6 2.0375 -0.7153 1.2534 5 7 3.4911 -0.9108 1.1302 6 6 4.1728 0.3628 0.8638 7 6 5.6669 0.1075 0.6542 8 6 6.3982 1.4443 0.5159 9 16 8.1654 1.1422 0.2673 10 6 8.7451 2.8016 0.1439 11 1 8.0496 3.6239 0.2245 12 6 10.0952 3.0518 -0.0581 13 7 10.5282 4.2915 -0.1508 14 14 11.2981 1.6295 -0.1984 15 1 11.4158 1.2193 -1.6207 16 1 12.6285 2.0547 0.3060 17 1 10.8061 0.4838 0.6082 18 6 3.7827 -1.8941 0.0784 19 6 3.0433 -1.5365 -1.1796 20 8 3.3974 -2.0402 -2.2245 21 7 2.0144 -0.6827 -1.1964 22 6 1.3393 -0.4252 -2.4707 23 1 -0.3633 -1.0276 -0.0052 24 1 -0.3633 0.5094 0.8926 25 1 -0.3633 0.5184 -0.8874 26 1 1.8236 -0.1078 2.1329 27 1 1.5431 -1.6821 1.3482 28 1 3.7530 0.8191 -0.0326 29 1 4.0344 1.0334 1.7118 30 1 6.0657 -0.4380 1.5095 31 1 5.8112 -0.4811 -0.2518 32 1 5.9993 1.9899 -0.3393 33 1 6.2537 2.0329 1.4219 34 1 11.4718 4.4663 -0.2915 35 1 4.8545 -1.9050 -0.1196 36 1 3.4676 -2.8833 0.4106 37 1 1.8160 0.4179 -2.9706 38 1 1.4088 -1.3097 -3.1040 39 1 0.2906 -0.1923 -2.2858 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337471403.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:41 Heat of formation + Delta-G solvation = -52.328445 kcal Electronic energy + Delta-G solvation = -19205.105566 eV Core-core repulsion = 16273.003663 eV Total energy + Delta-G solvation = -2932.101903 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.04220 -38.81747 -37.08537 -34.70208 -34.26928 -32.43631 -29.43586 -28.37320 -27.99625 -27.24058 -24.10935 -23.42349 -22.49621 -19.67376 -19.36083 -18.04515 -17.78147 -17.13090 -17.03997 -16.68353 -16.39885 -16.12283 -15.53837 -14.94741 -14.88665 -14.50594 -14.37349 -14.01706 -13.66310 -13.45015 -13.23273 -13.12522 -13.03577 -12.85879 -12.67504 -12.60107 -12.45449 -12.05754 -11.97479 -11.79136 -11.59674 -11.45110 -11.17729 -10.57952 -9.87028 -9.34895 -9.00818 -8.53466 -6.24771 1.10867 1.31155 1.44594 1.46760 1.71494 1.86339 2.23674 2.66483 2.81312 2.84859 3.37782 3.73679 3.83901 3.86642 3.95975 4.13966 4.16898 4.27395 4.28854 4.43184 4.49726 4.55721 4.59670 4.72501 4.77170 4.78760 4.83702 4.90174 4.98501 5.09859 5.19416 5.25375 5.35955 5.68304 5.72821 5.86104 6.08339 6.30014 6.90956 6.99100 8.59652 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.030494 B = 0.003874 C = 0.003802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 917.995910 B = 7225.311416 C = 7362.326615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.093 3.907 3 H 0.077 0.923 4 C 0.042 3.958 5 N -0.519 5.519 6 C 0.059 3.941 7 C -0.093 4.093 8 C -0.067 4.067 9 S -0.223 6.223 10 C -0.522 4.522 11 H 0.051 0.949 12 C 0.040 3.960 13 N -0.922 5.922 14 Si 0.924 3.076 15 H -0.265 1.265 16 H -0.261 1.261 17 H -0.228 1.228 18 C 0.035 3.965 19 C 0.478 3.522 20 O -0.599 6.599 21 N -0.604 5.604 22 C 0.070 3.930 23 H 0.065 0.935 24 H 0.095 0.905 25 H 0.068 0.932 26 H 0.124 0.876 27 H 0.100 0.900 28 H 0.034 0.966 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.075 0.925 34 H 0.277 0.723 35 H 0.108 0.892 36 H 0.131 0.869 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.625 -11.273 3.955 26.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.010 4.010 3 H 0.095 0.905 4 C -0.086 4.086 5 N -0.242 5.242 6 C -0.071 4.071 7 C -0.132 4.132 8 C -0.216 4.216 9 S 0.005 5.995 10 C -0.670 4.670 11 H 0.070 0.930 12 C -0.165 4.165 13 N -0.560 5.560 14 Si 0.745 3.255 15 H -0.190 1.190 16 H -0.185 1.185 17 H -0.152 1.152 18 C -0.096 4.096 19 C 0.266 3.734 20 O -0.479 6.479 21 N -0.336 5.336 22 C -0.073 4.073 23 H 0.084 0.916 24 H 0.114 0.886 25 H 0.087 0.913 26 H 0.142 0.858 27 H 0.118 0.882 28 H 0.052 0.948 29 H 0.119 0.881 30 H 0.103 0.897 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.093 0.907 34 H 0.086 0.914 35 H 0.126 0.874 36 H 0.149 0.851 37 H 0.066 0.934 38 H 0.078 0.922 39 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -22.527 -12.543 3.826 26.066 hybrid contribution 0.003 1.755 -1.295 2.182 sum -22.524 -10.788 2.530 25.102 Atomic orbital electron populations 1.22122 0.91502 1.03456 1.04271 1.22022 0.97429 0.96953 0.84632 0.90475 1.22856 0.85816 1.03066 0.96860 1.62665 1.09865 1.09282 1.42351 1.22207 0.92285 0.91312 1.01264 1.21353 0.94466 0.94651 1.02701 1.23033 0.94031 1.01159 1.03348 1.83915 1.07103 1.12788 1.95724 1.22335 0.96895 0.90733 1.57009 0.93031 1.25748 0.99358 0.98604 0.92803 1.70035 1.16759 1.20807 1.48397 0.85740 0.78980 0.80436 0.80372 1.18951 1.18493 1.15152 1.22606 1.01747 0.99297 0.85955 1.21780 0.80690 0.78462 0.92486 1.90694 1.66976 1.54955 1.35307 1.47675 1.31770 1.43509 1.10674 1.21840 0.98935 1.01293 0.85187 0.91579 0.88616 0.91279 0.85807 0.88164 0.94751 0.88098 0.89713 0.92460 0.92431 0.90650 0.91373 0.87447 0.85112 0.93450 0.92190 0.87443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 8.59 71.98 0.62 -0.46 16 2 C 0.09 1.20 2.59 45.08 0.12 1.31 16 3 H 0.08 1.08 6.80 -2.39 -0.02 1.06 16 4 C 0.04 0.48 5.35 86.24 0.46 0.94 16 5 N -0.52 -9.38 5.13 -900.92 -4.62 -14.00 16 6 C 0.06 1.28 4.51 86.31 0.39 1.67 16 7 C -0.09 -2.72 4.61 30.60 0.14 -2.57 16 8 C -0.07 -2.54 5.67 71.98 0.41 -2.14 16 9 S -0.22 -10.96 19.41 -56.49 -1.10 -12.06 16 10 C -0.52 -31.24 10.04 67.95 0.68 -30.56 16 11 H 0.05 3.34 8.03 -2.91 -0.02 3.31 16 12 C 0.04 2.36 5.50 84.85 0.47 2.83 16 13 N -0.92 -57.34 13.97 21.65 0.30 -57.04 16 14 Si 0.92 44.93 27.74 68.60 1.90 46.83 16 15 H -0.26 -12.63 7.11 99.48 0.71 -11.93 16 16 H -0.26 -11.91 7.11 99.48 0.71 -11.21 16 17 H -0.23 -10.69 6.74 99.48 0.67 -10.02 16 18 C 0.03 0.74 5.63 85.41 0.48 1.22 16 19 C 0.48 12.52 7.01 87.68 0.61 13.14 16 20 O -0.60 -21.21 16.33 -3.03 -0.05 -21.26 16 21 N -0.60 -12.09 2.93 -825.98 -2.42 -14.51 16 22 C 0.07 1.28 10.05 127.77 1.28 2.56 16 23 H 0.07 0.47 8.14 -2.39 -0.02 0.45 16 24 H 0.10 0.32 8.14 -2.39 -0.02 0.31 16 25 H 0.07 0.46 6.31 -2.38 -0.02 0.45 16 26 H 0.12 0.91 8.14 -2.39 -0.02 0.89 16 27 H 0.10 0.94 8.06 -2.39 -0.02 0.92 16 28 H 0.03 0.81 5.75 -2.39 -0.01 0.79 16 29 H 0.10 1.93 8.14 -2.39 -0.02 1.91 16 30 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 31 H 0.06 1.81 6.39 -2.39 -0.02 1.79 16 32 H 0.06 2.27 8.14 -2.40 -0.02 2.25 16 33 H 0.07 2.80 8.14 -2.39 -0.02 2.78 16 34 H 0.28 15.86 8.31 -92.71 -0.77 15.09 16 35 H 0.11 2.66 5.62 -2.39 -0.01 2.64 16 36 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 37 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 38 H 0.06 1.32 7.25 -2.39 -0.02 1.30 16 39 H 0.11 1.20 5.51 -2.38 -0.01 1.18 16 Total: -1.00 -75.26 317.33 0.67 -74.59 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: 0.99 Total: 9.51 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 5.66 Total: -12.06 kcal Atomic # 7 Polarization: -78.81 SS G_CDS: -6.74 Total: -85.55 kcal Atomic # 8 Polarization: -21.21 SS G_CDS: -0.05 Total: -21.26 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 1.90 Total: 46.83 kcal Atomic # 16 Polarization: -10.96 SS G_CDS: -1.10 Total: -12.06 kcal Total: -75.26 0.67 -74.59 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337471403.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.265 kcal (2) G-P(sol) polarization free energy of solvation -75.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds