Wall clock time and date at job start Mon Mar 30 2020 05:23:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.37282 * 2 1 4 4 C 1.52988 * 109.37468 * 240.24042 * 2 1 3 5 5 N 1.47193 * 108.72763 * 189.64550 * 4 2 1 6 6 C 1.46894 * 111.00168 * 305.63107 * 5 4 2 7 7 C 1.52998 * 109.46922 * 176.43638 * 6 5 4 8 8 C 1.53007 * 109.47064 * 174.38845 * 7 6 5 9 9 S 1.81000 * 109.47036 * 180.02562 * 8 7 6 10 10 C 1.76204 * 99.99717 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00186 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99529 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00746 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47319 * 89.99616 * 14 12 10 16 16 H 1.48503 * 109.47147 * 209.99882 * 14 12 10 17 17 H 1.48498 * 109.47177 * 329.99639 * 14 12 10 18 18 C 1.46905 * 110.17097 * 69.00017 * 5 4 2 19 19 C 1.50246 * 109.97760 * 309.69686 * 18 5 4 20 20 O 1.21284 * 118.62468 * 197.20217 * 19 18 5 21 21 N 1.33711 * 122.75517 * 17.20578 * 19 18 5 22 22 C 1.46504 * 118.54085 * 178.33293 * 21 19 18 23 23 H 1.08996 * 109.47201 * 179.76356 * 1 2 3 24 24 H 1.09002 * 109.47207 * 299.75862 * 1 2 3 25 25 H 1.09001 * 109.47409 * 59.76134 * 1 2 3 26 26 H 1.09004 * 109.59126 * 69.87576 * 4 2 1 27 27 H 1.08994 * 109.71674 * 309.49242 * 4 2 1 28 28 H 1.08998 * 109.47451 * 56.43778 * 6 5 4 29 29 H 1.08997 * 109.47063 * 296.43753 * 6 5 4 30 30 H 1.09001 * 109.47430 * 54.39174 * 7 6 5 31 31 H 1.08999 * 109.47488 * 294.38967 * 7 6 5 32 32 H 1.08999 * 109.47067 * 300.00379 * 8 7 6 33 33 H 1.09001 * 109.46729 * 59.99899 * 8 7 6 34 34 H 0.96997 * 120.00433 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.38472 * 69.85851 * 18 5 4 36 36 H 1.09003 * 109.37883 * 189.54070 * 18 5 4 37 37 H 1.08998 * 109.47060 * 269.98183 * 22 21 19 38 38 H 1.09005 * 109.46617 * 29.97892 * 22 21 19 39 39 H 1.09000 * 109.47434 * 149.97471 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0375 -0.7164 -1.2529 5 7 3.4907 -0.9141 -1.1282 6 6 4.1742 0.3584 -0.8615 7 6 5.6675 0.1008 -0.6505 8 6 6.4009 1.4364 -0.5118 9 16 8.1677 1.1316 -0.2630 10 6 8.7495 2.7901 -0.1377 11 1 8.0554 3.6135 -0.2187 12 6 10.1002 3.0382 0.0638 13 7 10.9464 2.0347 0.1619 14 14 10.7170 4.7964 0.1973 15 1 10.6801 5.2275 1.6178 16 1 12.1119 4.8712 -0.3067 17 1 9.8494 5.6882 -0.6133 18 6 3.7797 -1.8977 -0.0759 19 6 3.0429 -1.5348 1.1822 20 8 3.3979 -2.0354 2.2283 21 7 2.0122 -0.6831 1.1969 22 6 1.3369 -0.4235 2.4708 23 1 -0.3633 -1.0276 -0.0042 24 1 -0.3634 0.5101 0.8921 25 1 -0.3634 0.5175 -0.8878 26 1 1.8254 -0.1086 -2.1326 27 1 1.5439 -1.6834 -1.3490 28 1 3.7543 0.8157 0.0344 29 1 4.0375 1.0291 -1.7098 30 1 6.0663 -0.4456 -1.5051 31 1 5.8102 -0.4878 0.2558 32 1 6.2583 2.0250 -1.4181 33 1 6.0021 1.9829 0.3428 34 1 11.8902 2.2082 0.3032 35 1 3.4634 -2.8864 -0.4082 36 1 4.8513 -1.9102 0.1230 37 1 0.5236 -1.1371 2.6029 38 1 2.0500 -0.5299 3.2883 39 1 0.9347 0.5896 2.4690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337471404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:44 Heat of formation + Delta-G solvation = -30.648723 kcal Electronic energy + Delta-G solvation = -19161.989355 eV Core-core repulsion = 16230.827555 eV Total energy + Delta-G solvation = -2931.161800 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -41.11128 -37.77236 -36.11989 -32.99107 -32.40627 -31.62577 -28.45121 -27.51126 -26.32746 -25.44997 -23.16769 -22.54608 -21.25812 -18.47723 -17.52869 -17.04888 -16.85622 -16.06927 -15.71743 -15.22427 -14.81826 -14.78756 -14.02991 -13.88000 -13.71034 -13.22377 -13.00809 -12.91061 -12.58966 -12.33529 -12.21768 -11.90064 -11.76576 -11.59525 -11.53254 -11.18230 -11.05860 -10.77888 -10.63847 -10.50362 -10.24724 -9.54137 -9.04472 -8.98059 -8.42113 -8.28922 -6.51057 -6.21164 -3.91454 2.49370 2.69531 3.22243 3.22953 3.29979 3.50972 3.76408 4.18708 4.23594 4.46612 4.53530 4.68032 4.91952 5.01927 5.08139 5.14654 5.17627 5.22719 5.32763 5.34563 5.38401 5.45660 5.51079 5.60841 5.63575 5.66909 5.72417 5.86321 6.03302 6.13574 6.27515 6.50735 6.64565 6.69186 6.82288 7.21302 7.61699 7.99656 8.37857 9.24943 10.87046 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.003682 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.043544 B = 7603.452024 C = 7664.677266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.100 3.900 3 H 0.079 0.921 4 C 0.042 3.958 5 N -0.523 5.523 6 C 0.048 3.952 7 C -0.101 4.101 8 C -0.111 4.111 9 S -0.130 6.130 10 C -0.517 4.517 11 H 0.072 0.928 12 C 0.071 3.929 13 N -0.869 5.869 14 Si 0.918 3.082 15 H -0.277 1.277 16 H -0.282 1.282 17 H -0.272 1.272 18 C 0.031 3.969 19 C 0.487 3.513 20 O -0.546 6.546 21 N -0.607 5.607 22 C 0.080 3.920 23 H 0.062 0.938 24 H 0.063 0.937 25 H 0.073 0.927 26 H 0.099 0.901 27 H 0.085 0.915 28 H 0.039 0.961 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.066 0.934 32 H 0.061 0.939 33 H 0.057 0.943 34 H 0.267 0.733 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.053 0.947 38 H 0.079 0.921 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.293 -4.486 -2.394 22.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.005 4.005 3 H 0.097 0.903 4 C -0.087 4.087 5 N -0.245 5.245 6 C -0.080 4.080 7 C -0.139 4.139 8 C -0.260 4.260 9 S 0.098 5.902 10 C -0.665 4.665 11 H 0.090 0.910 12 C -0.138 4.138 13 N -0.505 5.505 14 Si 0.745 3.255 15 H -0.203 1.203 16 H -0.207 1.207 17 H -0.197 1.197 18 C -0.100 4.100 19 C 0.274 3.726 20 O -0.423 6.423 21 N -0.342 5.342 22 C -0.063 4.063 23 H 0.081 0.919 24 H 0.082 0.918 25 H 0.092 0.908 26 H 0.117 0.883 27 H 0.104 0.896 28 H 0.057 0.943 29 H 0.101 0.899 30 H 0.097 0.903 31 H 0.084 0.916 32 H 0.080 0.920 33 H 0.076 0.924 34 H 0.077 0.923 35 H 0.129 0.871 36 H 0.142 0.858 37 H 0.072 0.928 38 H 0.097 0.903 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -21.119 -5.974 -2.234 22.062 hybrid contribution -0.668 2.717 0.836 2.920 sum -21.788 -3.258 -1.398 22.074 Atomic orbital electron populations 1.22126 0.93827 1.02865 1.02974 1.21794 0.95536 0.97419 0.85779 0.90286 1.22666 0.88109 1.01653 0.96223 1.62641 1.07813 1.10654 1.43439 1.22398 0.95004 0.90039 1.00584 1.21407 0.92136 0.97558 1.02846 1.23199 1.01639 0.98527 1.02678 1.84660 0.96830 1.14017 1.94675 1.22687 0.95595 0.91080 1.57163 0.90999 1.25010 0.95766 0.98327 0.94655 1.70020 1.03364 1.30736 1.46357 0.86171 0.78069 0.82805 0.78504 1.20297 1.20736 1.19699 1.22638 1.03030 0.97913 0.86369 1.21376 0.79994 0.78658 0.92604 1.90722 1.65745 1.52401 1.33417 1.47519 1.32618 1.44827 1.09243 1.21633 0.97695 1.00584 0.86383 0.91907 0.91826 0.90839 0.88288 0.89638 0.94290 0.89912 0.90268 0.91559 0.91980 0.92447 0.92295 0.87129 0.85751 0.92814 0.90271 0.91377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.91 8.81 37.15 0.33 -0.58 16 2 C 0.10 0.82 2.54 -68.21 -0.17 0.65 16 3 H 0.08 0.69 6.80 -51.93 -0.35 0.34 16 4 C 0.04 0.34 5.35 -3.67 -0.02 0.32 16 5 N -0.52 -5.75 5.13 -236.11 -1.21 -6.97 16 6 C 0.05 0.62 4.50 -3.83 -0.02 0.60 16 7 C -0.10 -1.64 4.61 -26.73 -0.12 -1.76 16 8 C -0.11 -2.25 5.67 37.16 0.21 -2.04 16 9 S -0.13 -3.45 21.44 -107.50 -2.30 -5.75 16 10 C -0.52 -14.98 9.50 30.94 0.29 -14.69 16 11 H 0.07 2.01 7.80 -52.49 -0.41 1.60 16 12 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 13 N -0.87 -26.26 13.22 55.49 0.73 -25.52 16 14 Si 0.92 21.70 29.55 -169.99 -5.02 16.67 16 15 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 18 C 0.03 0.37 5.63 -5.19 -0.03 0.34 16 19 C 0.49 6.74 7.00 -11.68 -0.08 6.66 16 20 O -0.55 -9.71 16.30 5.55 0.09 -9.62 16 21 N -0.61 -6.73 2.93 -174.81 -0.51 -7.24 16 22 C 0.08 0.78 9.11 59.85 0.55 1.33 16 23 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.06 0.35 6.75 -51.93 -0.35 0.00 16 25 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 26 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.09 0.62 8.06 -51.93 -0.42 0.20 16 28 H 0.04 0.51 5.75 -51.93 -0.30 0.22 16 29 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.08 1.30 8.14 -51.93 -0.42 0.88 16 31 H 0.07 1.14 6.39 -51.93 -0.33 0.81 16 32 H 0.06 1.22 8.14 -51.92 -0.42 0.80 16 33 H 0.06 1.17 8.14 -51.92 -0.42 0.75 16 34 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 35 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 36 H 0.12 1.67 5.62 -51.93 -0.29 1.38 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.95 7.21 -51.93 -0.37 0.57 16 39 H 0.07 0.52 7.23 -51.93 -0.38 0.14 16 LS Contribution 321.31 15.07 4.84 4.84 Total: -1.00 -33.93 321.31 -8.69 -42.62 By element: Atomic # 1 Polarization: 4.33 SS G_CDS: -6.14 Total: -1.81 kcal Atomic # 6 Polarization: -8.06 SS G_CDS: 0.84 Total: -7.22 kcal Atomic # 7 Polarization: -38.74 SS G_CDS: -0.99 Total: -39.73 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.09 Total: -9.62 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.67 kcal Atomic # 16 Polarization: -3.45 SS G_CDS: -2.30 Total: -5.75 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -33.93 -8.69 -42.62 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337471404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.971 kcal (2) G-P(sol) polarization free energy of solvation -33.928 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.957 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds