Wall clock time and date at job start Mon Mar 30 2020 05:23:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.37282 * 2 1 4 4 C 1.52988 * 109.37468 * 240.24042 * 2 1 3 5 5 N 1.47193 * 108.72763 * 189.64550 * 4 2 1 6 6 C 1.46894 * 111.00168 * 305.63107 * 5 4 2 7 7 C 1.52998 * 109.46922 * 176.43638 * 6 5 4 8 8 C 1.53007 * 109.47064 * 174.38845 * 7 6 5 9 9 S 1.81000 * 109.47036 * 180.02562 * 8 7 6 10 10 C 1.76204 * 99.99717 * 180.02562 * 9 8 7 11 11 H 1.07997 * 120.00186 * 359.97438 * 10 9 8 12 12 C 1.38800 * 119.99529 * 180.02562 * 10 9 8 13 13 N 1.31628 * 120.00746 * 359.97438 * 12 10 9 14 14 Si 1.86803 * 119.99584 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.47319 * 89.99616 * 14 12 10 16 16 H 1.48503 * 109.47147 * 209.99882 * 14 12 10 17 17 H 1.48498 * 109.47177 * 329.99639 * 14 12 10 18 18 C 1.46905 * 110.17097 * 69.00017 * 5 4 2 19 19 C 1.50246 * 109.97760 * 309.69686 * 18 5 4 20 20 O 1.21284 * 118.62468 * 197.20217 * 19 18 5 21 21 N 1.33711 * 122.75517 * 17.20578 * 19 18 5 22 22 C 1.46504 * 118.54085 * 178.33293 * 21 19 18 23 23 H 1.08996 * 109.47201 * 179.76356 * 1 2 3 24 24 H 1.09002 * 109.47207 * 299.75862 * 1 2 3 25 25 H 1.09001 * 109.47409 * 59.76134 * 1 2 3 26 26 H 1.09004 * 109.59126 * 69.87576 * 4 2 1 27 27 H 1.08994 * 109.71674 * 309.49242 * 4 2 1 28 28 H 1.08998 * 109.47451 * 56.43778 * 6 5 4 29 29 H 1.08997 * 109.47063 * 296.43753 * 6 5 4 30 30 H 1.09001 * 109.47430 * 54.39174 * 7 6 5 31 31 H 1.08999 * 109.47488 * 294.38967 * 7 6 5 32 32 H 1.08999 * 109.47067 * 300.00379 * 8 7 6 33 33 H 1.09001 * 109.46729 * 59.99899 * 8 7 6 34 34 H 0.96997 * 120.00433 * 180.02562 * 13 12 10 35 35 H 1.08994 * 109.38472 * 69.85851 * 18 5 4 36 36 H 1.09003 * 109.37883 * 189.54070 * 18 5 4 37 37 H 1.08998 * 109.47060 * 269.98183 * 22 21 19 38 38 H 1.09005 * 109.46617 * 29.97892 * 22 21 19 39 39 H 1.09000 * 109.47434 * 149.97471 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8915 1.0283 0.0000 4 6 2.0375 -0.7164 -1.2529 5 7 3.4907 -0.9141 -1.1282 6 6 4.1742 0.3584 -0.8615 7 6 5.6675 0.1008 -0.6505 8 6 6.4009 1.4364 -0.5118 9 16 8.1677 1.1316 -0.2630 10 6 8.7495 2.7901 -0.1377 11 1 8.0554 3.6135 -0.2187 12 6 10.1002 3.0382 0.0638 13 7 10.9464 2.0347 0.1619 14 14 10.7170 4.7964 0.1973 15 1 10.6801 5.2275 1.6178 16 1 12.1119 4.8712 -0.3067 17 1 9.8494 5.6882 -0.6133 18 6 3.7797 -1.8977 -0.0759 19 6 3.0429 -1.5348 1.1822 20 8 3.3979 -2.0354 2.2283 21 7 2.0122 -0.6831 1.1969 22 6 1.3369 -0.4235 2.4708 23 1 -0.3633 -1.0276 -0.0042 24 1 -0.3634 0.5101 0.8921 25 1 -0.3634 0.5175 -0.8878 26 1 1.8254 -0.1086 -2.1326 27 1 1.5439 -1.6834 -1.3490 28 1 3.7543 0.8157 0.0344 29 1 4.0375 1.0291 -1.7098 30 1 6.0663 -0.4456 -1.5051 31 1 5.8102 -0.4878 0.2558 32 1 6.2583 2.0250 -1.4181 33 1 6.0021 1.9829 0.3428 34 1 11.8902 2.2082 0.3032 35 1 3.4634 -2.8864 -0.4082 36 1 4.8513 -1.9102 0.1230 37 1 0.5236 -1.1371 2.6029 38 1 2.0500 -0.5299 3.2883 39 1 0.9347 0.5896 2.4690 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337471404.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:23:43 Heat of formation + Delta-G solvation = -54.868965 kcal Electronic energy + Delta-G solvation = -19163.039623 eV Core-core repulsion = 16230.827555 eV Total energy + Delta-G solvation = -2932.212068 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.03562 -38.81260 -37.05158 -34.62965 -34.20459 -32.42928 -29.43728 -28.29623 -27.87409 -27.13882 -24.09672 -23.42047 -22.47688 -19.61522 -19.36267 -18.02192 -17.75667 -17.00543 -16.90369 -16.73333 -16.38609 -16.07673 -15.61731 -14.86348 -14.80162 -14.38259 -14.13565 -14.00442 -13.53938 -13.30120 -13.15004 -12.98931 -12.95585 -12.85415 -12.70617 -12.62972 -12.50532 -12.32111 -12.01443 -11.74437 -11.42650 -11.38301 -11.14867 -10.32829 -9.87094 -9.33360 -8.67961 -8.37772 -6.14663 1.30691 1.39161 1.44608 1.48511 1.72148 1.86497 2.27652 2.80883 2.96535 3.31011 3.38675 3.74565 3.85776 3.89026 3.97936 4.18199 4.18424 4.28349 4.32044 4.45392 4.51647 4.56803 4.60994 4.74213 4.78865 4.80101 4.85803 4.90071 4.98587 5.12075 5.22738 5.25567 5.36996 5.38706 5.73217 5.87789 6.17326 6.30038 6.99318 7.04153 8.71805 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.029559 B = 0.003682 C = 0.003652 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 947.043544 B = 7603.452024 C = 7664.677266 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.095 3.905 3 H 0.080 0.920 4 C 0.041 3.959 5 N -0.521 5.521 6 C 0.061 3.939 7 C -0.090 4.090 8 C -0.085 4.085 9 S -0.202 6.202 10 C -0.539 4.539 11 H 0.074 0.926 12 C 0.015 3.985 13 N -0.908 5.908 14 Si 0.995 3.005 15 H -0.269 1.269 16 H -0.274 1.274 17 H -0.260 1.260 18 C 0.034 3.966 19 C 0.478 3.522 20 O -0.599 6.599 21 N -0.604 5.604 22 C 0.077 3.923 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.094 0.906 26 H 0.125 0.875 27 H 0.099 0.901 28 H 0.035 0.965 29 H 0.101 0.899 30 H 0.077 0.923 31 H 0.050 0.950 32 H 0.071 0.929 33 H 0.055 0.945 34 H 0.271 0.729 35 H 0.131 0.869 36 H 0.104 0.896 37 H 0.067 0.933 38 H 0.050 0.950 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.598 -2.943 -3.703 25.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.009 4.009 3 H 0.098 0.902 4 C -0.086 4.086 5 N -0.244 5.244 6 C -0.068 4.068 7 C -0.129 4.129 8 C -0.234 4.234 9 S 0.027 5.973 10 C -0.686 4.686 11 H 0.092 0.908 12 C -0.190 4.190 13 N -0.545 5.545 14 Si 0.817 3.183 15 H -0.195 1.195 16 H -0.198 1.198 17 H -0.184 1.184 18 C -0.096 4.096 19 C 0.266 3.734 20 O -0.480 6.480 21 N -0.337 5.337 22 C -0.065 4.065 23 H 0.082 0.918 24 H 0.085 0.915 25 H 0.113 0.887 26 H 0.143 0.857 27 H 0.117 0.883 28 H 0.054 0.946 29 H 0.119 0.881 30 H 0.095 0.905 31 H 0.069 0.931 32 H 0.090 0.910 33 H 0.073 0.927 34 H 0.080 0.920 35 H 0.148 0.852 36 H 0.122 0.878 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -23.472 -4.414 -3.572 24.149 hybrid contribution -0.062 2.201 1.224 2.519 sum -23.534 -2.213 -2.348 23.754 Atomic orbital electron populations 1.22087 0.91381 1.03330 1.04245 1.22039 0.97439 0.96917 0.84509 0.90250 1.22868 0.85741 1.03030 0.96990 1.62658 1.09947 1.09394 1.42361 1.22201 0.92166 0.91221 1.01224 1.21290 0.94543 0.94989 1.02082 1.23112 0.96673 1.00786 1.02831 1.84716 1.02960 1.14624 1.95016 1.23044 0.96358 0.91648 1.57578 0.90792 1.26093 0.95822 1.03318 0.93786 1.70161 1.03827 1.33377 1.47112 0.85000 0.77705 0.76713 0.78890 1.19459 1.19849 1.18433 1.22589 1.01669 0.99286 0.86101 1.21740 0.80501 0.78730 0.92398 1.90694 1.67452 1.54696 1.35124 1.47699 1.31612 1.43614 1.10734 1.21724 0.97172 1.02525 0.85111 0.91843 0.91473 0.88678 0.85743 0.88295 0.94638 0.88052 0.90471 0.93090 0.91006 0.92661 0.91961 0.85154 0.87831 0.91442 0.93097 0.88816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.81 71.98 0.63 -0.52 16 2 C 0.09 1.27 2.54 45.08 0.11 1.38 16 3 H 0.08 1.12 6.80 -2.39 -0.02 1.10 16 4 C 0.04 0.52 5.35 86.24 0.46 0.98 16 5 N -0.52 -10.32 5.13 -900.92 -4.62 -14.94 16 6 C 0.06 1.43 4.50 86.30 0.39 1.82 16 7 C -0.09 -2.92 4.61 30.60 0.14 -2.78 16 8 C -0.08 -3.41 5.67 71.98 0.41 -3.00 16 9 S -0.20 -11.00 21.44 -56.49 -1.21 -12.21 16 10 C -0.54 -31.57 9.50 67.95 0.65 -30.92 16 11 H 0.07 4.15 7.80 -2.91 -0.02 4.12 16 12 C 0.01 0.84 5.49 84.86 0.47 1.31 16 13 N -0.91 -55.81 13.22 21.65 0.29 -55.52 16 14 Si 1.00 44.33 29.55 68.60 2.03 46.35 16 15 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 16 H -0.27 -11.71 7.11 99.48 0.71 -11.01 16 17 H -0.26 -10.98 7.11 99.48 0.71 -10.27 16 18 C 0.03 0.81 5.63 85.41 0.48 1.29 16 19 C 0.48 13.24 7.00 87.68 0.61 13.86 16 20 O -0.60 -22.18 16.30 -3.04 -0.05 -22.23 16 21 N -0.60 -12.56 2.93 -825.95 -2.42 -14.99 16 22 C 0.08 1.43 9.11 127.77 1.16 2.60 16 23 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 24 H 0.07 0.49 6.75 -2.39 -0.02 0.48 16 25 H 0.09 0.37 8.14 -2.39 -0.02 0.35 16 26 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 27 H 0.10 1.05 8.06 -2.39 -0.02 1.03 16 28 H 0.04 0.87 5.75 -2.39 -0.01 0.86 16 29 H 0.10 2.05 8.14 -2.39 -0.02 2.04 16 30 H 0.08 2.53 8.14 -2.39 -0.02 2.51 16 31 H 0.05 1.81 6.39 -2.39 -0.02 1.80 16 32 H 0.07 2.75 8.14 -2.40 -0.02 2.73 16 33 H 0.05 2.24 8.14 -2.39 -0.02 2.22 16 34 H 0.27 15.45 8.31 -92.71 -0.77 14.68 16 35 H 0.13 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.10 2.88 5.62 -2.39 -0.01 2.87 16 37 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.05 1.25 7.21 -2.38 -0.02 1.23 16 39 H 0.09 1.23 7.23 -2.39 -0.02 1.21 16 Total: -1.00 -76.00 321.31 0.55 -75.45 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: 1.02 Total: 12.07 kcal Atomic # 6 Polarization: -19.50 SS G_CDS: 5.52 Total: -13.98 kcal Atomic # 7 Polarization: -78.69 SS G_CDS: -6.76 Total: -85.45 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.05 Total: -22.23 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: -11.00 SS G_CDS: -1.21 Total: -12.21 kcal Total: -76.00 0.55 -75.45 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337471404.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.579 kcal (2) G-P(sol) polarization free energy of solvation -75.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds