Wall clock time and date at job start Mon Mar 30 2020 04:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 112.52097 * 2 1 4 4 S 1.81429 * 113.14655 * 230.20077 * 2 1 3 5 5 C 1.81423 * 73.13860 * 273.34427 * 4 2 1 6 6 C 1.53041 * 113.14729 * 129.80580 * 2 1 3 7 7 H 1.08999 * 113.18850 * 197.62692 * 6 2 1 8 8 N 1.46507 * 113.14838 * 327.10607 * 6 2 1 9 9 C 1.34774 * 119.99769 * 204.88104 * 8 6 2 10 10 O 1.21592 * 120.00301 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99902 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00235 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99666 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47136 * 90.00209 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99921 * 19 17 15 22 22 H 1.48503 * 109.47230 * 330.00590 * 19 17 15 23 23 H 1.08992 * 109.47216 * 290.19643 * 1 2 3 24 24 H 1.09001 * 109.47014 * 50.20009 * 1 2 3 25 25 H 1.09004 * 109.46813 * 170.19895 * 1 2 3 26 26 H 1.08996 * 109.46846 * 189.79681 * 3 2 1 27 27 H 1.09001 * 109.46957 * 309.80467 * 3 2 1 28 28 H 1.09004 * 109.47068 * 69.80085 * 3 2 1 29 29 H 1.08998 * 113.15132 * 216.14387 * 5 4 2 30 30 H 1.08995 * 113.18783 * 86.66319 * 5 4 2 31 31 H 0.96999 * 120.00180 * 24.89087 * 8 6 2 32 32 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 34 34 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 35 35 H 1.09004 * 109.46930 * 299.99770 * 13 12 11 36 36 H 1.09004 * 109.47059 * 59.99372 * 13 12 11 37 37 H 1.08992 * 109.47534 * 299.99582 * 14 13 12 38 38 H 1.08996 * 109.47134 * 60.00388 * 14 13 12 39 39 H 0.96992 * 120.00108 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9432 -2.1153 0.1689 6 6 2.1317 -0.9009 1.0810 7 1 3.1784 -0.6801 1.2901 8 7 1.3180 -0.9625 2.2978 9 6 1.8931 -1.2658 3.4784 10 8 3.0873 -1.4878 3.5337 11 7 1.1445 -1.3231 4.5977 12 6 1.7697 -1.6522 5.8810 13 6 0.7069 -1.6498 6.9817 14 6 1.3598 -1.9941 8.3218 15 6 0.3130 -1.9911 9.4059 16 1 -0.7150 -1.7657 9.1634 17 6 0.6679 -2.2751 10.7077 18 7 -0.2455 -2.2720 11.6539 19 14 2.4461 -2.6643 11.1273 20 1 3.1604 -1.4080 11.4688 21 1 2.4897 -3.5897 12.2879 22 1 3.1017 -3.3045 9.9587 23 1 -0.3633 0.3548 0.9644 24 1 -0.3633 0.6578 -0.7895 25 1 -0.3633 -1.0127 -0.1749 26 1 3.1906 1.3610 -0.1749 27 1 1.6475 2.0009 -0.7895 28 1 1.9274 1.8848 0.9645 29 1 2.7068 -2.8800 0.3106 30 1 0.9331 -2.5234 0.2021 31 1 0.3653 -0.7852 2.2538 32 1 0.1919 -1.1456 4.5536 33 1 2.2274 -2.6396 5.8196 34 1 2.5345 -0.9111 6.1133 35 1 0.2496 -0.6622 7.0430 36 1 -0.0582 -2.3907 6.7495 37 1 1.8167 -2.9817 8.2603 38 1 2.1250 -1.2535 8.5541 39 1 0.0041 -2.4722 12.5695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000338467649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:07 Heat of formation + Delta-G solvation = -24.845972 kcal Electronic energy + Delta-G solvation = -18517.231153 eV Core-core repulsion = 15586.320979 eV Total energy + Delta-G solvation = -2930.910173 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.35287 -38.28225 -35.51375 -33.61247 -33.06525 -31.45446 -30.51795 -28.10860 -27.11393 -23.81490 -22.80607 -21.27180 -20.61540 -20.29173 -18.39592 -16.95984 -16.66416 -16.09991 -15.69295 -15.26966 -15.10728 -14.56213 -14.30050 -14.15028 -13.87109 -13.77607 -12.91671 -12.79215 -12.70542 -12.55409 -12.16923 -11.96663 -11.90389 -11.73418 -11.09632 -11.06548 -10.90557 -10.57471 -10.32743 -10.03572 -9.84785 -9.70153 -9.43592 -9.24587 -8.80028 -8.56955 -8.18396 -6.07863 -4.06706 1.32897 1.48808 2.64056 3.13806 3.30541 3.38276 3.42511 3.87050 4.16820 4.23968 4.36399 4.43277 4.45758 4.79082 5.04388 5.14610 5.25196 5.26380 5.29521 5.32251 5.38220 5.51744 5.62225 5.65724 5.74568 6.00024 6.17455 6.32569 6.43691 6.62517 6.78134 6.88093 7.21379 7.34759 7.74063 7.96915 8.48226 8.57317 8.95839 9.54427 11.05383 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.002827 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.455602 B = 9901.799241 C =10119.346121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.039 4.039 3 C -0.135 4.135 4 S -0.273 6.273 5 C -0.104 4.104 6 C 0.176 3.824 7 H 0.135 0.865 8 N -0.737 5.737 9 C 0.702 3.298 10 O -0.589 6.589 11 N -0.739 5.739 12 C 0.132 3.868 13 C -0.113 4.113 14 C -0.011 4.011 15 C -0.522 4.522 16 H 0.072 0.928 17 C 0.066 3.934 18 N -0.903 5.903 19 Si 0.880 3.120 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.264 1.264 23 H 0.071 0.929 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.071 0.929 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.102 0.898 30 H 0.107 0.893 31 H 0.398 0.602 32 H 0.396 0.604 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.060 0.940 36 H 0.060 0.940 37 H 0.019 0.981 38 H 0.015 0.985 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.950 4.981 -25.210 25.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.150 4.150 3 C -0.193 4.193 4 S -0.046 6.046 5 C -0.254 4.254 6 C 0.067 3.933 7 H 0.153 0.847 8 N -0.394 5.394 9 C 0.401 3.599 10 O -0.467 6.467 11 N -0.393 5.393 12 C 0.009 3.991 13 C -0.151 4.151 14 C -0.049 4.049 15 C -0.560 4.560 16 H 0.090 0.910 17 C -0.135 4.135 18 N -0.542 5.542 19 Si 0.707 3.293 20 H -0.202 1.202 21 H -0.214 1.214 22 H -0.188 1.188 23 H 0.090 0.910 24 H 0.091 0.909 25 H 0.088 0.912 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.091 0.909 29 H 0.120 0.880 30 H 0.125 0.875 31 H 0.234 0.766 32 H 0.229 0.771 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.079 0.921 37 H 0.037 0.963 38 H 0.033 0.967 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.564 4.709 -26.301 26.842 hybrid contribution -0.517 -0.136 1.291 1.398 sum 2.046 4.573 -25.010 25.507 Atomic orbital electron populations 1.21886 0.90938 1.03486 1.03028 1.24105 0.99178 0.99219 0.92513 1.21836 1.01634 0.92870 1.02993 1.89025 1.81560 1.11348 1.22622 1.25020 1.06201 1.02088 0.92067 1.22405 0.97736 0.91116 0.82036 0.84711 1.45212 1.11682 1.76474 1.06053 1.16035 0.85463 0.78062 0.80294 1.90932 1.13430 1.56763 1.85580 1.45351 1.11552 1.75127 1.07289 1.21549 0.96611 1.00687 0.80279 1.21709 0.97070 1.01662 0.94648 1.19497 0.96799 0.96478 0.92117 1.21095 0.95744 1.47885 0.91319 0.91028 1.25030 0.97355 0.94715 0.96380 1.69908 1.33473 1.49634 1.01204 0.86775 0.85596 0.78697 0.78230 1.20231 1.21384 1.18850 0.90987 0.90857 0.91161 0.91007 0.91701 0.90864 0.87971 0.87508 0.76645 0.77100 0.91863 0.91865 0.92136 0.92119 0.96266 0.96705 0.92682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.71 8.21 37.16 0.31 -0.41 16 2 C -0.04 -0.28 1.31 -90.60 -0.12 -0.40 16 3 C -0.14 -0.92 9.13 37.16 0.34 -0.58 16 4 S -0.27 -2.50 23.92 -107.50 -2.57 -5.07 16 5 C -0.10 -0.87 7.39 37.18 0.27 -0.59 16 6 C 0.18 1.56 3.27 -67.88 -0.22 1.34 16 7 H 0.14 1.47 7.45 -51.93 -0.39 1.08 16 8 N -0.74 -6.64 5.24 -68.97 -0.36 -7.00 16 9 C 0.70 9.38 8.57 -86.92 -0.74 8.63 16 10 O -0.59 -10.43 15.95 5.28 0.08 -10.34 16 11 N -0.74 -9.38 5.56 -65.22 -0.36 -9.74 16 12 C 0.13 2.10 5.67 -4.04 -0.02 2.08 16 13 C -0.11 -2.02 5.27 -26.73 -0.14 -2.16 16 14 C -0.01 -0.25 4.04 -27.89 -0.11 -0.36 16 15 C -0.52 -14.51 9.66 -34.44 -0.33 -14.84 16 16 H 0.07 2.12 7.99 -52.48 -0.42 1.70 16 17 C 0.07 1.91 5.47 -17.82 -0.10 1.82 16 18 N -0.90 -27.54 13.96 55.43 0.77 -26.77 16 19 Si 0.88 21.54 27.47 -169.99 -4.67 16.87 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.26 -6.22 6.54 56.52 0.37 -5.85 16 23 H 0.07 0.30 6.81 -51.93 -0.35 -0.06 16 24 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 25 H 0.07 0.36 6.83 -51.93 -0.35 0.01 16 26 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.10 0.92 8.14 -51.93 -0.42 0.50 16 30 H 0.11 0.76 7.12 -51.93 -0.37 0.39 16 31 H 0.40 2.48 6.58 -40.82 -0.27 2.21 16 32 H 0.40 3.87 8.49 -40.82 -0.35 3.52 16 33 H 0.06 1.07 8.14 -51.93 -0.42 0.64 16 34 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 35 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.02 0.44 7.20 -51.93 -0.37 0.07 16 38 H 0.01 0.34 7.57 -51.93 -0.39 -0.06 16 39 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 328.42 15.07 4.95 4.95 Total: -1.00 -32.86 328.42 -9.27 -42.13 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: -6.24 Total: 0.46 kcal Atomic # 6 Polarization: -4.61 SS G_CDS: -0.87 Total: -5.48 kcal Atomic # 7 Polarization: -43.56 SS G_CDS: 0.05 Total: -43.51 kcal Atomic # 8 Polarization: -10.43 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.67 Total: 16.87 kcal Atomic # 16 Polarization: -2.50 SS G_CDS: -2.57 Total: -5.07 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.86 -9.27 -42.13 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338467649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.279 kcal (2) G-P(sol) polarization free energy of solvation -32.860 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.581 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.846 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds