Wall clock time and date at job start Mon Mar 30 2020 04:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 112.52097 * 2 1 4 4 S 1.81429 * 113.14655 * 230.20077 * 2 1 3 5 5 C 1.81423 * 73.13860 * 273.34427 * 4 2 1 6 6 C 1.53041 * 113.14729 * 129.80580 * 2 1 3 7 7 H 1.08999 * 113.18850 * 197.62692 * 6 2 1 8 8 N 1.46507 * 113.14838 * 327.10607 * 6 2 1 9 9 C 1.34774 * 119.99769 * 204.88104 * 8 6 2 10 10 O 1.21592 * 120.00301 * 0.02562 * 9 8 6 11 11 N 1.34777 * 119.99902 * 180.02562 * 9 8 6 12 12 C 1.46506 * 119.99873 * 180.02562 * 11 9 8 13 13 C 1.53002 * 109.47035 * 179.97438 * 12 11 9 14 14 C 1.52996 * 109.46969 * 179.97438 * 13 12 11 15 15 C 1.50699 * 109.46861 * 179.97438 * 14 13 12 16 16 H 1.08003 * 119.99962 * 359.97438 * 15 14 13 17 17 C 1.37884 * 120.00200 * 180.02562 * 15 14 13 18 18 N 1.31513 * 120.00235 * 179.97438 * 17 15 14 19 19 Si 1.86799 * 119.99666 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.47136 * 90.00209 * 19 17 15 21 21 H 1.48499 * 109.47078 * 209.99921 * 19 17 15 22 22 H 1.48503 * 109.47230 * 330.00590 * 19 17 15 23 23 H 1.08992 * 109.47216 * 290.19643 * 1 2 3 24 24 H 1.09001 * 109.47014 * 50.20009 * 1 2 3 25 25 H 1.09004 * 109.46813 * 170.19895 * 1 2 3 26 26 H 1.08996 * 109.46846 * 189.79681 * 3 2 1 27 27 H 1.09001 * 109.46957 * 309.80467 * 3 2 1 28 28 H 1.09004 * 109.47068 * 69.80085 * 3 2 1 29 29 H 1.08998 * 113.15132 * 216.14387 * 5 4 2 30 30 H 1.08995 * 113.18783 * 86.66319 * 5 4 2 31 31 H 0.96999 * 120.00180 * 24.89087 * 8 6 2 32 32 H 0.96999 * 120.00047 * 359.97438 * 11 9 8 33 33 H 1.09004 * 109.47073 * 299.99562 * 12 11 9 34 34 H 1.09000 * 109.47212 * 59.99645 * 12 11 9 35 35 H 1.09004 * 109.46930 * 299.99770 * 13 12 11 36 36 H 1.09004 * 109.47059 * 59.99372 * 13 12 11 37 37 H 1.08992 * 109.47534 * 299.99582 * 14 13 12 38 38 H 1.08996 * 109.47134 * 60.00388 * 14 13 12 39 39 H 0.96992 * 120.00108 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1161 1.4133 0.0000 4 16 2.2432 -1.0678 -1.2817 5 6 1.9432 -2.1153 0.1689 6 6 2.1317 -0.9009 1.0810 7 1 3.1784 -0.6801 1.2901 8 7 1.3180 -0.9625 2.2978 9 6 1.8931 -1.2658 3.4784 10 8 3.0873 -1.4878 3.5337 11 7 1.1445 -1.3231 4.5977 12 6 1.7697 -1.6522 5.8810 13 6 0.7069 -1.6498 6.9817 14 6 1.3598 -1.9941 8.3218 15 6 0.3130 -1.9911 9.4059 16 1 -0.7150 -1.7657 9.1634 17 6 0.6679 -2.2751 10.7077 18 7 -0.2455 -2.2720 11.6539 19 14 2.4461 -2.6643 11.1273 20 1 3.1604 -1.4080 11.4688 21 1 2.4897 -3.5897 12.2879 22 1 3.1017 -3.3045 9.9587 23 1 -0.3633 0.3548 0.9644 24 1 -0.3633 0.6578 -0.7895 25 1 -0.3633 -1.0127 -0.1749 26 1 3.1906 1.3610 -0.1749 27 1 1.6475 2.0009 -0.7895 28 1 1.9274 1.8848 0.9645 29 1 2.7068 -2.8800 0.3106 30 1 0.9331 -2.5234 0.2021 31 1 0.3653 -0.7852 2.2538 32 1 0.1919 -1.1456 4.5536 33 1 2.2274 -2.6396 5.8196 34 1 2.5345 -0.9111 6.1133 35 1 0.2496 -0.6622 7.0430 36 1 -0.0582 -2.3907 6.7495 37 1 1.8167 -2.9817 8.2603 38 1 2.1250 -1.2535 8.5541 39 1 0.0041 -2.4722 12.5695 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000338467649.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:06 Heat of formation + Delta-G solvation = -47.558228 kcal Electronic energy + Delta-G solvation = -18518.216030 eV Core-core repulsion = 15586.320979 eV Total energy + Delta-G solvation = -2931.895051 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.31222 -39.11982 -36.90834 -35.14318 -34.29007 -33.02919 -31.31887 -28.78984 -28.57173 -25.02241 -23.94951 -22.29964 -22.05920 -21.21863 -19.48080 -18.86987 -17.62238 -16.88016 -16.81191 -16.38455 -15.97872 -15.95758 -15.63310 -15.08166 -14.96692 -14.74688 -14.55246 -13.77988 -13.69952 -13.42233 -13.32926 -13.09517 -12.74032 -12.68538 -12.63393 -12.28878 -11.90350 -11.76374 -11.72419 -11.56104 -11.40208 -11.30037 -11.05360 -10.74180 -10.41240 -9.83531 -8.90718 -8.27630 -6.31168 0.70049 0.78048 1.38708 1.40531 1.52123 1.69482 2.10367 2.38182 3.08529 3.19145 3.28620 3.63191 3.67210 3.90483 4.13891 4.16047 4.26653 4.50556 4.55141 4.60878 4.66847 4.76689 4.81655 4.83204 4.94414 4.95779 5.07748 5.15268 5.25982 5.35969 5.44599 5.55484 5.60102 5.67567 5.97963 6.29715 6.77271 7.07809 7.33820 7.55786 8.88781 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.046543 B = 0.002827 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.455602 B = 9901.799241 C =10119.346121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.020 4.020 3 C -0.136 4.136 4 S -0.313 6.313 5 C -0.094 4.094 6 C 0.172 3.828 7 H 0.113 0.887 8 N -0.715 5.715 9 C 0.702 3.298 10 O -0.634 6.634 11 N -0.729 5.729 12 C 0.146 3.854 13 C -0.099 4.099 14 C -0.013 4.013 15 C -0.529 4.529 16 H 0.039 0.961 17 C 0.004 3.996 18 N -0.951 5.951 19 Si 0.946 3.054 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.247 1.247 23 H 0.089 0.911 24 H 0.080 0.920 25 H 0.075 0.925 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.125 0.875 31 H 0.415 0.585 32 H 0.412 0.588 33 H 0.054 0.946 34 H 0.056 0.944 35 H 0.065 0.935 36 H 0.065 0.935 37 H 0.020 0.980 38 H 0.020 0.980 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.005 5.324 -26.447 26.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.131 4.131 3 C -0.194 4.194 4 S -0.086 6.086 5 C -0.244 4.244 6 C 0.063 3.937 7 H 0.131 0.869 8 N -0.373 5.373 9 C 0.401 3.599 10 O -0.515 6.515 11 N -0.385 5.385 12 C 0.021 3.979 13 C -0.137 4.137 14 C -0.051 4.051 15 C -0.567 4.567 16 H 0.057 0.943 17 C -0.193 4.193 18 N -0.592 5.592 19 Si 0.770 3.230 20 H -0.193 1.193 21 H -0.212 1.212 22 H -0.170 1.170 23 H 0.108 0.892 24 H 0.099 0.901 25 H 0.094 0.906 26 H 0.080 0.920 27 H 0.094 0.906 28 H 0.097 0.903 29 H 0.111 0.889 30 H 0.143 0.857 31 H 0.254 0.746 32 H 0.249 0.751 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.084 0.916 36 H 0.084 0.916 37 H 0.039 0.961 38 H 0.038 0.962 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.563 5.072 -27.591 28.170 hybrid contribution -0.618 -0.209 1.633 1.759 sum 1.945 4.863 -25.958 26.481 Atomic orbital electron populations 1.21950 0.88934 1.04203 1.04317 1.24098 1.00428 0.98547 0.89985 1.21856 1.01136 0.92746 1.03689 1.89227 1.82372 1.13299 1.23748 1.25002 1.06939 1.01441 0.90992 1.22363 0.96883 0.92293 0.82168 0.86937 1.44951 1.12472 1.75149 1.04692 1.16135 0.84832 0.77765 0.81134 1.90912 1.15559 1.58731 1.86324 1.45035 1.12329 1.74928 1.06175 1.21153 0.95623 1.00100 0.80982 1.21470 0.97301 1.02011 0.92908 1.19468 0.95760 0.96732 0.93139 1.21483 0.95591 1.46774 0.92858 0.94313 1.25977 1.02056 0.94818 0.96401 1.70054 1.35958 1.51446 1.01770 0.85714 0.79986 0.78876 0.78436 1.19278 1.21211 1.17041 0.89228 0.90134 0.90642 0.92039 0.90638 0.90254 0.88880 0.85667 0.74581 0.75131 0.92720 0.92608 0.91585 0.91645 0.96116 0.96211 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.00 8.21 71.98 0.59 -0.41 16 2 C -0.02 -0.25 1.31 -10.78 -0.01 -0.27 16 3 C -0.14 -1.62 9.13 71.98 0.66 -0.96 16 4 S -0.31 -5.48 23.92 -56.49 -1.35 -6.83 16 5 C -0.09 -1.45 7.39 72.00 0.53 -0.92 16 6 C 0.17 2.81 3.27 45.02 0.15 2.96 16 7 H 0.11 2.44 7.45 -2.39 -0.02 2.42 16 8 N -0.71 -11.18 5.24 -490.39 -2.57 -13.75 16 9 C 0.70 17.46 8.57 179.06 1.53 19.00 16 10 O -0.63 -21.94 15.95 -4.01 -0.06 -22.00 16 11 N -0.73 -16.80 5.56 -478.51 -2.66 -19.46 16 12 C 0.15 4.37 5.67 86.38 0.49 4.86 16 13 C -0.10 -3.38 5.27 30.59 0.16 -3.21 16 14 C -0.01 -0.57 4.04 29.85 0.12 -0.45 16 15 C -0.53 -29.47 9.66 25.60 0.25 -29.22 16 16 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 17 C 0.00 0.24 5.47 84.66 0.46 0.71 16 18 N -0.95 -58.93 13.96 21.45 0.30 -58.64 16 19 Si 0.95 43.89 27.47 68.60 1.88 45.78 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.29 -13.11 7.11 99.48 0.71 -12.40 16 22 H -0.25 -10.68 6.54 99.48 0.65 -10.03 16 23 H 0.09 0.38 6.81 -2.39 -0.02 0.36 16 24 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 25 H 0.07 0.52 6.83 -2.39 -0.02 0.50 16 26 H 0.06 0.86 8.10 -2.39 -0.02 0.84 16 27 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 28 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 29 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 30 H 0.13 1.47 7.12 -2.39 -0.02 1.45 16 31 H 0.41 3.71 6.58 -92.71 -0.61 3.10 16 32 H 0.41 6.78 8.49 -92.71 -0.79 5.99 16 33 H 0.05 1.75 8.14 -2.38 -0.02 1.73 16 34 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.07 2.18 8.14 -2.38 -0.02 2.16 16 36 H 0.06 2.17 8.14 -2.39 -0.02 2.15 16 37 H 0.02 0.91 7.20 -2.39 -0.02 0.90 16 38 H 0.02 0.86 7.57 -2.39 -0.02 0.84 16 39 H 0.27 15.39 8.31 -92.71 -0.77 14.62 16 Total: -1.00 -71.72 328.42 0.06 -71.65 By element: Atomic # 1 Polarization: 11.56 SS G_CDS: -0.40 Total: 11.16 kcal Atomic # 6 Polarization: -12.85 SS G_CDS: 4.93 Total: -7.92 kcal Atomic # 7 Polarization: -86.91 SS G_CDS: -4.93 Total: -91.84 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.06 Total: -22.00 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: -5.48 SS G_CDS: -1.35 Total: -6.83 kcal Total: -71.72 0.06 -71.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000338467649.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.093 kcal (2) G-P(sol) polarization free energy of solvation -71.715 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.064 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds