Wall clock time and date at job start Mon Mar 30 2020 05:53:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46895 * 1 3 3 C 1.46892 * 111.00174 * 2 1 4 4 C 1.46909 * 111.00178 * 123.95199 * 2 1 3 5 5 C 1.52990 * 109.47305 * 170.26680 * 4 2 1 6 6 H 1.09007 * 109.87614 * 52.57962 * 5 4 2 7 7 C 1.54320 * 110.01286 * 291.48156 * 5 4 2 8 8 C 1.55157 * 102.94295 * 218.31426 * 7 5 4 9 9 C 1.54689 * 101.67496 * 35.33991 * 8 7 5 10 10 N 1.47024 * 109.88363 * 173.59600 * 5 4 2 11 11 C 1.34773 * 125.64823 * 298.48016 * 10 5 4 12 12 O 1.21286 * 120.00142 * 354.96670 * 11 10 5 13 13 C 1.50701 * 119.99987 * 174.96330 * 11 10 5 14 14 S 1.81004 * 109.46994 * 179.97438 * 13 11 10 15 15 C 1.76203 * 99.99988 * 180.02562 * 14 13 11 16 16 H 1.07998 * 119.99584 * 359.72820 * 15 14 13 17 17 C 1.38797 * 119.99984 * 180.02562 * 15 14 13 18 18 N 1.31624 * 119.99951 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99869 * 180.02562 * 17 15 14 20 20 H 1.48493 * 109.47419 * 59.99648 * 19 17 15 21 21 H 1.48496 * 109.47154 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46656 * 299.99550 * 19 17 15 23 23 H 1.08990 * 109.47183 * 296.04733 * 1 2 3 24 24 H 1.09005 * 109.47003 * 56.05141 * 1 2 3 25 25 H 1.09006 * 109.46805 * 176.04663 * 1 2 3 26 26 H 1.09001 * 109.47470 * 180.51667 * 3 2 1 27 27 H 1.09005 * 109.47063 * 300.51360 * 3 2 1 28 28 H 1.08996 * 109.47821 * 60.51377 * 3 2 1 29 29 H 1.09002 * 109.46458 * 50.26601 * 4 2 1 30 30 H 1.09001 * 109.46566 * 290.27341 * 4 2 1 31 31 H 1.08997 * 110.72385 * 336.68054 * 7 5 4 32 32 H 1.09003 * 110.72001 * 99.77936 * 7 5 4 33 33 H 1.09007 * 111.00097 * 153.57334 * 8 7 5 34 34 H 1.08998 * 111.00780 * 277.38908 * 8 7 5 35 35 H 1.09002 * 110.39346 * 204.36176 * 9 8 7 36 36 H 1.09003 * 110.23744 * 82.10791 * 9 8 7 37 37 H 1.09002 * 109.46876 * 60.00583 * 13 11 10 38 38 H 1.08996 * 109.47470 * 300.00192 * 13 11 10 39 39 H 0.97000 * 120.00200 * 180.02562 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9955 -0.7660 1.1377 5 6 3.5054 -0.9496 0.9738 6 1 3.9803 0.0171 0.8061 7 6 3.7972 -1.8907 -0.2140 8 6 5.0005 -2.7284 0.2938 9 6 4.6707 -2.8698 1.7985 10 7 4.0661 -1.5799 2.1780 11 6 4.0372 -1.0616 3.4217 12 8 3.5977 0.0541 3.6037 13 6 4.5510 -1.8683 4.5863 14 16 4.3792 -0.9057 6.1096 15 6 5.0365 -2.0542 7.2730 16 1 5.3856 -3.0204 6.9398 17 6 5.1000 -1.7195 8.6185 18 7 4.6697 -0.5440 9.0253 19 14 5.7976 -2.9369 9.8519 20 1 7.2036 -3.2533 9.4941 21 1 5.7540 -2.3431 11.2123 22 1 4.9889 -4.1821 9.8297 23 1 -0.3633 0.4512 0.9232 24 1 -0.3633 0.5739 -0.8525 25 1 -0.3633 -1.0253 -0.0709 26 1 3.0850 1.3423 -0.0093 27 1 1.6385 1.8976 -0.8854 28 1 1.6535 1.8919 0.8945 29 1 1.5123 -1.7425 1.1728 30 1 1.7932 -0.2270 2.0632 31 1 2.9396 -2.5318 -0.4178 32 1 4.0690 -1.3189 -1.1013 33 1 5.0319 -3.7026 -0.1943 34 1 5.9383 -2.1916 0.1509 35 1 5.5809 -3.0453 2.3719 36 1 3.9606 -3.6820 1.9542 37 1 5.6018 -2.1093 4.4259 38 1 3.9757 -2.7901 4.6718 39 1 4.7144 -0.3100 9.9656 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000362511222.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:53:13 Heat of formation + Delta-G solvation = -52.575085 kcal Electronic energy + Delta-G solvation = -19119.465449 eV Core-core repulsion = 16187.352851 eV Total energy + Delta-G solvation = -2932.112598 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.29906 -38.90998 -37.61845 -34.60804 -33.04527 -31.58354 -30.09512 -28.56556 -27.68433 -26.93845 -24.26424 -22.80528 -21.75201 -20.33675 -19.49017 -18.22686 -17.51782 -16.89983 -16.57242 -16.35814 -16.12585 -15.79854 -15.67994 -15.08156 -14.73877 -14.41325 -14.04929 -13.92459 -13.64581 -13.44048 -13.22490 -13.11124 -12.88168 -12.74203 -12.70478 -12.61590 -12.40093 -12.07655 -11.77165 -11.74292 -11.52378 -11.14486 -10.96098 -10.31441 -9.74522 -9.42167 -8.70777 -8.36287 -6.15679 1.21747 1.43191 1.43293 1.52566 1.54414 2.04133 2.25901 2.97838 2.99115 3.24420 3.56315 3.65745 3.83632 3.96902 4.16168 4.21653 4.23076 4.27514 4.40462 4.43103 4.43898 4.56573 4.67041 4.70438 4.79029 4.87081 4.93853 4.95993 5.02874 5.08225 5.17956 5.37408 5.39272 5.44616 5.90526 5.97562 6.17611 6.40488 7.04500 7.10203 8.72913 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.028103 B = 0.004157 C = 0.003783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.102511 B = 6734.380580 C = 7399.283111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 N -0.535 5.535 3 C 0.021 3.979 4 C 0.050 3.950 5 C 0.136 3.864 6 H 0.059 0.941 7 C -0.100 4.100 8 C -0.123 4.123 9 C 0.087 3.913 10 N -0.615 5.615 11 C 0.545 3.455 12 O -0.565 6.565 13 C -0.119 4.119 14 S -0.152 6.152 15 C -0.548 4.548 16 H 0.083 0.917 17 C 0.015 3.985 18 N -0.912 5.912 19 Si 1.000 3.000 20 H -0.261 1.261 21 H -0.278 1.278 22 H -0.261 1.261 23 H 0.011 0.989 24 H 0.088 0.912 25 H 0.079 0.921 26 H 0.066 0.934 27 H 0.091 0.909 28 H 0.006 0.994 29 H 0.082 0.918 30 H 0.007 0.993 31 H 0.088 0.912 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.076 0.924 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.106 0.894 38 H 0.105 0.895 39 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.275 -6.725 -22.197 23.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.259 5.259 3 C -0.127 4.127 4 C -0.079 4.079 5 C 0.032 3.968 6 H 0.077 0.923 7 C -0.137 4.137 8 C -0.161 4.161 9 C -0.034 4.034 10 N -0.350 5.350 11 C 0.333 3.667 12 O -0.443 6.443 13 C -0.270 4.270 14 S 0.075 5.925 15 C -0.695 4.695 16 H 0.101 0.899 17 C -0.190 4.190 18 N -0.548 5.548 19 Si 0.821 3.179 20 H -0.185 1.185 21 H -0.203 1.203 22 H -0.186 1.186 23 H 0.029 0.971 24 H 0.107 0.893 25 H 0.097 0.903 26 H 0.085 0.915 27 H 0.110 0.890 28 H 0.025 0.975 29 H 0.100 0.900 30 H 0.025 0.975 31 H 0.107 0.893 32 H 0.113 0.887 33 H 0.133 0.867 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.102 0.898 37 H 0.124 0.876 38 H 0.123 0.877 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -2.800 -5.167 -22.158 22.924 hybrid contribution 0.383 -0.858 1.881 2.102 sum -2.417 -6.025 -20.278 21.291 Atomic orbital electron populations 1.22467 0.86216 1.03163 1.00677 1.62065 1.08795 1.13820 1.41210 1.22478 1.00883 0.88708 1.00673 1.22375 0.95643 0.98567 0.91363 1.21680 0.92255 0.97745 0.85085 0.92292 1.22525 0.98986 0.96997 0.95241 1.22793 0.98361 1.02491 0.92463 1.22653 0.98636 0.84371 0.97779 1.48582 1.57760 1.22809 1.05823 1.19805 0.77873 0.85839 0.83193 1.90675 1.47918 1.21086 1.84668 1.23310 1.05073 1.02614 0.96011 1.85581 1.83233 1.25666 0.97992 1.23163 1.48202 1.03534 0.94650 0.89895 1.26143 0.95110 0.97950 0.99814 1.70179 1.45209 1.22348 1.17104 0.84989 0.79082 0.77698 0.76143 1.18525 1.20333 1.18582 0.97060 0.89299 0.90273 0.91510 0.89006 0.97504 0.89985 0.97494 0.89316 0.88655 0.86683 0.90503 0.90027 0.89819 0.87599 0.87703 0.91947 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.43 9.57 127.69 1.22 1.65 16 2 N -0.53 -11.83 4.86 -948.87 -4.61 -16.43 16 3 C 0.02 0.46 9.40 127.69 1.20 1.66 16 4 C 0.05 1.33 4.38 86.30 0.38 1.71 16 5 C 0.14 3.39 2.82 45.34 0.13 3.52 16 6 H 0.06 1.67 6.20 -2.38 -0.01 1.66 16 7 C -0.10 -1.54 6.33 31.78 0.20 -1.34 16 8 C -0.12 -1.61 7.07 31.91 0.23 -1.38 16 9 C 0.09 1.69 6.64 86.78 0.58 2.26 16 10 N -0.61 -17.87 3.07 -788.50 -2.42 -20.29 16 11 C 0.54 21.88 7.58 87.66 0.66 22.54 16 12 O -0.56 -27.83 15.02 -3.05 -0.05 -27.88 16 13 C -0.12 -4.99 5.25 71.24 0.37 -4.62 16 14 S -0.15 -8.68 20.57 -56.49 -1.16 -9.84 16 15 C -0.55 -31.76 9.50 67.95 0.65 -31.11 16 16 H 0.08 4.44 7.80 -2.91 -0.02 4.42 16 17 C 0.01 0.84 5.49 84.86 0.47 1.30 16 18 N -0.91 -56.69 13.22 21.65 0.29 -56.40 16 19 Si 1.00 43.78 29.55 68.60 2.03 45.81 16 20 H -0.26 -10.79 7.11 99.48 0.71 -10.09 16 21 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 22 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 23 H 0.01 0.24 8.14 -2.39 -0.02 0.22 16 24 H 0.09 1.29 8.14 -2.38 -0.02 1.27 16 25 H 0.08 1.29 8.12 -2.38 -0.02 1.27 16 26 H 0.07 1.52 6.18 -2.39 -0.01 1.50 16 27 H 0.09 1.55 8.14 -2.38 -0.02 1.53 16 28 H 0.01 0.17 8.14 -2.39 -0.02 0.15 16 29 H 0.08 2.01 7.92 -2.39 -0.02 1.99 16 30 H 0.01 0.24 6.83 -2.39 -0.02 0.23 16 31 H 0.09 1.23 7.75 -2.39 -0.02 1.21 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.11 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 35 H 0.08 1.55 7.51 -2.39 -0.02 1.53 16 36 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 37 H 0.11 4.03 7.76 -2.39 -0.02 4.01 16 38 H 0.10 4.02 8.14 -2.40 -0.02 4.00 16 39 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -76.99 329.32 1.17 -75.82 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.01 Total: 13.02 kcal Atomic # 6 Polarization: -9.88 SS G_CDS: 6.08 Total: -3.80 kcal Atomic # 7 Polarization: -86.39 SS G_CDS: -6.74 Total: -93.13 kcal Atomic # 8 Polarization: -27.83 SS G_CDS: -0.05 Total: -27.88 kcal Atomic # 14 Polarization: 43.78 SS G_CDS: 2.03 Total: 45.81 kcal Atomic # 16 Polarization: -8.68 SS G_CDS: -1.16 Total: -9.84 kcal Total: -76.99 1.17 -75.82 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000362511222.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.245 kcal (2) G-P(sol) polarization free energy of solvation -76.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds