Wall clock time and date at job start Mon Mar 30 2020 04:47:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30904 * 1 3 3 Si 1.86800 * 119.99793 * 2 1 4 4 H 1.48494 * 109.47357 * 269.99847 * 3 2 1 5 5 H 1.48505 * 109.47120 * 30.00102 * 3 2 1 6 6 H 1.48501 * 109.46789 * 149.99868 * 3 2 1 7 7 C 1.39888 * 120.00131 * 179.97438 * 2 1 3 8 8 H 1.07994 * 120.00118 * 195.15510 * 7 2 1 9 9 C 1.41025 * 119.99809 * 15.16101 * 7 2 1 10 10 C 1.40673 * 120.26906 * 25.75356 * 9 7 2 11 11 C 1.38008 * 119.76567 * 180.23282 * 10 9 7 12 12 N 1.39851 * 119.83460 * 179.77153 * 11 10 9 13 13 C 1.46502 * 119.99911 * 179.44452 * 12 11 10 14 14 C 1.52998 * 109.47328 * 180.02562 * 13 12 11 15 15 C 1.50695 * 109.47438 * 180.02562 * 14 13 12 16 16 C 1.39865 * 126.04174 * 269.69525 * 15 14 13 17 17 N 1.30840 * 108.20244 * 179.81376 * 16 15 14 18 18 N 1.40081 * 108.20555 * 0.43972 * 17 16 15 19 19 H 0.96998 * 126.03400 * 179.70022 * 18 17 16 20 20 C 1.34941 * 107.92446 * 359.71418 * 18 17 16 21 21 C 1.39602 * 120.32220 * 359.48981 * 11 10 9 22 22 C 1.38047 * 120.55305 * 0.24129 * 21 11 10 23 23 C 1.38742 * 120.21969 * 0.02562 * 22 21 11 24 24 N 1.38862 * 120.16496 * 179.97438 * 23 22 21 25 25 H 0.96998 * 119.99821 * 359.97438 * 1 2 3 26 26 H 1.07995 * 120.11384 * 359.97438 * 10 9 7 27 27 H 0.96998 * 120.00518 * 359.72607 * 12 11 10 28 28 H 1.08997 * 109.47166 * 300.00310 * 13 12 11 29 29 H 1.09001 * 109.46814 * 60.00458 * 13 12 11 30 30 H 1.09005 * 109.46889 * 299.99945 * 14 13 12 31 31 H 1.08999 * 109.47037 * 59.99592 * 14 13 12 32 32 H 1.08002 * 125.89793 * 359.97438 * 16 15 14 33 33 H 1.08001 * 126.12669 * 180.02562 * 20 18 17 34 34 H 1.08003 * 119.72435 * 180.25456 * 21 11 10 35 35 H 1.07996 * 119.89695 * 180.02562 * 22 21 11 36 36 H 0.96998 * 119.99949 * 0.02562 * 24 23 22 37 37 H 0.97001 * 120.00270 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3090 0.0000 0.0000 3 14 2.2430 1.6178 0.0000 4 1 2.4905 2.0465 -1.4000 5 1 1.4404 2.6527 0.7001 6 1 3.5405 1.4402 0.7001 7 6 2.0085 -1.2114 0.0005 8 1 3.0603 -1.2276 0.2451 9 6 1.3402 -2.4116 -0.3183 10 6 0.1925 -2.3897 -1.1316 11 6 -0.4561 -3.5699 -1.4331 12 7 -1.6000 -3.5492 -2.2375 13 6 -2.2844 -4.8012 -2.5700 14 6 -3.4955 -4.5008 -3.4553 15 6 -4.1999 -5.7885 -3.7967 16 6 -3.9422 -6.5980 -4.9078 17 7 -4.7493 -7.6266 -4.8602 18 7 -5.5543 -7.4989 -3.7209 19 1 -6.2461 -8.1175 -3.4387 20 6 -5.1975 -6.3631 -3.0855 21 6 0.0273 -4.7848 -0.9440 22 6 1.1555 -4.8223 -0.1494 23 6 1.8223 -3.6489 0.1724 24 7 2.9568 -3.6879 0.9722 25 1 -0.4850 0.8400 0.0004 26 1 -0.1819 -1.4521 -1.5151 27 1 -1.9379 -2.7065 -2.5788 28 1 -1.5989 -5.4594 -3.1037 29 1 -2.6161 -5.2884 -1.6531 30 1 -4.1812 -3.8424 -2.9218 31 1 -3.1635 -4.0137 -4.3721 32 1 -3.2027 -6.4081 -5.6717 33 1 -5.6304 -5.9813 -2.1727 34 1 -0.4856 -5.7030 -1.1894 35 1 1.5205 -5.7680 0.2229 36 1 3.2852 -4.5370 1.3070 37 1 3.4209 -2.8661 1.1961 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000379746024.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:10 Heat of formation + Delta-G solvation = 92.689133 kcal Electronic energy + Delta-G solvation = -19509.366129 eV Core-core repulsion = 16480.401460 eV Total energy + Delta-G solvation = -3028.964669 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.24836 -37.91232 -35.75841 -33.44190 -33.21215 -31.51011 -30.89931 -29.35948 -28.02715 -25.72180 -24.64935 -22.75977 -22.04246 -20.93798 -19.97561 -19.60435 -17.84612 -16.98220 -16.01344 -15.42001 -14.92285 -14.83278 -14.72692 -14.54009 -14.31030 -14.09082 -13.02326 -12.89829 -12.63750 -12.27893 -11.92178 -11.83416 -11.51611 -11.34979 -11.24536 -10.98972 -10.95351 -10.66263 -10.32397 -9.83866 -9.75726 -9.63298 -9.28169 -9.03154 -8.55460 -7.70573 -7.17707 -6.57273 -5.48529 -4.03159 1.78814 2.68826 2.79501 2.94058 3.15551 3.18050 3.34827 3.53015 4.05944 4.47611 4.78356 4.81789 4.85911 5.24699 5.42142 5.45917 5.53985 5.67020 5.87372 5.88556 5.97170 6.37742 6.41507 6.44928 6.55539 6.69132 7.13201 7.16573 7.20246 7.36583 7.53254 7.53951 7.75120 7.93434 8.05594 8.17042 8.50252 8.80901 8.95203 8.99279 9.04504 9.29995 9.38492 10.41179 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.026254 B = 0.003653 C = 0.003306 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1066.234754 B = 7662.823418 C = 8467.336986 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.802 5.802 2 C 0.076 3.924 3 Si 0.903 3.097 4 H -0.271 1.271 5 H -0.281 1.281 6 H -0.266 1.266 7 C -0.463 4.463 8 H 0.070 0.930 9 C 0.094 3.906 10 C -0.201 4.201 11 C 0.177 3.823 12 N -0.765 5.765 13 C 0.146 3.854 14 C -0.052 4.052 15 C -0.225 4.225 16 C 0.058 3.942 17 N -0.301 5.301 18 N -0.481 5.481 19 H 0.437 0.563 20 C 0.060 3.940 21 C -0.254 4.254 22 C -0.153 4.153 23 C 0.084 3.916 24 N -0.889 5.889 25 H 0.274 0.726 26 H 0.120 0.880 27 H 0.387 0.613 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.071 0.929 31 H 0.073 0.927 32 H 0.183 0.817 33 H 0.176 0.824 34 H 0.084 0.916 35 H 0.083 0.917 36 H 0.374 0.626 37 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.439 -7.262 -4.794 12.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.429 5.429 2 C -0.140 4.140 3 Si 0.728 3.272 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.190 1.190 7 C -0.495 4.495 8 H 0.088 0.912 9 C 0.089 3.911 10 C -0.225 4.225 11 C 0.079 3.921 12 N -0.400 5.400 13 C 0.020 3.980 14 C -0.091 4.091 15 C -0.237 4.237 16 C -0.129 4.129 17 N -0.124 5.124 18 N -0.189 5.189 19 H 0.281 0.719 20 C -0.088 4.088 21 C -0.278 4.278 22 C -0.178 4.178 23 C -0.017 4.017 24 N -0.432 5.432 25 H 0.085 0.915 26 H 0.137 0.863 27 H 0.220 0.780 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.089 0.911 31 H 0.092 0.908 32 H 0.200 0.800 33 H 0.193 0.807 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.198 0.802 37 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges -9.098 -8.347 -5.403 13.478 hybrid contribution 0.357 1.451 0.786 1.688 sum -8.741 -6.896 -4.617 12.054 Atomic orbital electron populations 1.69880 1.07197 1.28238 1.37542 1.25742 0.94685 1.00627 0.92925 0.86419 0.80345 0.81432 0.78997 1.19638 1.20659 1.19024 1.19138 0.96541 0.91028 1.42761 0.91160 1.16975 0.92717 0.90237 0.91187 1.20541 1.00966 0.95194 1.05833 1.17514 0.87369 0.94096 0.93158 1.44337 1.30420 1.06461 1.58766 1.20962 0.92105 0.88058 0.96865 1.20059 0.96165 0.92751 1.00164 1.20048 1.03035 1.01922 0.98738 1.23877 0.98437 0.91900 0.98683 1.77301 1.07859 1.23148 1.04069 1.46268 1.31946 1.20371 1.20359 0.71923 1.22446 0.98329 0.88918 0.99070 1.19618 1.02283 0.94510 1.11406 1.19702 0.98693 0.94573 1.04791 1.17864 0.91573 0.93930 0.98322 1.41809 1.31821 1.09097 1.60487 0.91527 0.86276 0.77991 0.93685 0.93856 0.91054 0.90799 0.79984 0.80661 0.89770 0.89873 0.80152 0.78366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.80 -20.92 10.88 55.55 0.60 -20.32 16 2 C 0.08 1.92 5.19 -17.33 -0.09 1.83 16 3 Si 0.90 18.99 29.59 -169.99 -5.03 13.96 16 4 H -0.27 -5.67 7.11 56.52 0.40 -5.27 16 5 H -0.28 -5.83 7.11 56.52 0.40 -5.43 16 6 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 7 C -0.46 -12.22 8.50 -37.91 -0.32 -12.55 16 8 H 0.07 1.77 6.67 -52.49 -0.35 1.42 16 9 C 0.09 2.51 5.58 -106.65 -0.60 1.92 16 10 C -0.20 -5.24 8.50 -38.75 -0.33 -5.56 16 11 C 0.18 4.16 6.64 -83.77 -0.56 3.60 16 12 N -0.76 -14.51 5.74 -58.64 -0.34 -14.85 16 13 C 0.15 2.26 4.89 -4.04 -0.02 2.24 16 14 C -0.05 -0.62 5.81 -27.89 -0.16 -0.78 16 15 C -0.23 -2.57 5.35 -105.06 -0.56 -3.13 16 16 C 0.06 0.67 11.96 -17.37 -0.21 0.47 16 17 N -0.30 -3.71 12.70 30.62 0.39 -3.32 16 18 N -0.48 -4.60 7.36 30.45 0.22 -4.38 16 19 H 0.44 2.70 8.96 -182.61 -1.64 1.06 16 20 C 0.06 0.58 11.90 -17.22 -0.21 0.37 16 21 C -0.25 -5.88 9.31 -39.14 -0.36 -6.25 16 22 C -0.15 -3.58 9.86 -39.47 -0.39 -3.97 16 23 C 0.08 2.06 6.79 -83.22 -0.56 1.50 16 24 N -0.89 -18.48 8.98 32.75 0.29 -18.18 16 25 H 0.27 6.58 8.30 -40.82 -0.34 6.24 16 26 H 0.12 3.21 6.15 -52.49 -0.32 2.89 16 27 H 0.39 6.91 8.48 -40.82 -0.35 6.57 16 28 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 29 H 0.04 0.70 7.93 -51.93 -0.41 0.29 16 30 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.18 1.73 8.06 -52.49 -0.42 1.30 16 33 H 0.18 1.20 8.06 -52.49 -0.42 0.78 16 34 H 0.08 1.79 6.69 -52.48 -0.35 1.44 16 35 H 0.08 1.74 8.06 -52.49 -0.42 1.32 16 36 H 0.37 6.58 8.83 -40.82 -0.36 6.22 16 37 H 0.39 7.90 7.04 -40.82 -0.29 7.62 16 LS Contribution 314.30 15.07 4.74 4.74 Total: -1.00 -31.02 314.30 -9.21 -40.24 By element: Atomic # 1 Polarization: 28.17 SS G_CDS: -5.73 Total: 22.44 kcal Atomic # 6 Polarization: -15.96 SS G_CDS: -4.37 Total: -20.33 kcal Atomic # 7 Polarization: -62.22 SS G_CDS: 1.17 Total: -61.05 kcal Atomic # 14 Polarization: 18.99 SS G_CDS: -5.03 Total: 13.96 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -31.02 -9.21 -40.24 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000379746024.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.927 kcal (2) G-P(sol) polarization free energy of solvation -31.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 101.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.238 kcal (6) G-S(sol) free energy of system = (1) + (5) 92.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds