Wall clock time and date at job start Mon Mar 30 2020 04:58:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34134 * 125.98972 * 2 1 4 4 C 1.30494 * 109.26004 * 180.02562 * 3 2 1 5 5 N 1.35052 * 108.69794 * 359.76604 * 4 3 2 6 6 H 0.96996 * 126.39592 * 180.26939 * 5 4 3 7 7 C 1.34667 * 125.99243 * 179.97438 * 2 1 3 8 8 C 1.50702 * 126.59039 * 359.96670 * 7 2 1 9 9 N 1.46496 * 109.47022 * 79.99966 * 8 7 2 10 10 C 1.39853 * 119.99949 * 180.02562 * 9 8 7 11 11 C 1.39609 * 119.83829 * 359.97438 * 10 9 8 12 12 C 1.38053 * 120.54581 * 180.30206 * 11 10 9 13 13 C 1.38733 * 120.22468 * 359.44619 * 12 11 10 14 14 N 1.38864 * 120.16759 * 180.29941 * 13 12 11 15 15 C 1.41567 * 119.67261 * 0.55003 * 13 12 11 16 16 C 1.41023 * 120.26645 * 179.70364 * 15 13 12 17 17 H 1.07997 * 120.00236 * 25.57142 * 16 15 13 18 18 C 1.39891 * 119.99629 * 205.56943 * 16 15 13 19 19 N 1.30897 * 120.00368 * 15.35441 * 18 16 15 20 20 Si 1.86798 * 119.99689 * 195.35812 * 18 16 15 21 21 H 1.48500 * 109.47523 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47109 * 119.99964 * 20 18 16 23 23 H 1.48499 * 109.47401 * 239.99959 * 20 18 16 24 24 C 1.38003 * 119.84112 * 180.02562 * 10 9 8 25 25 H 1.09002 * 109.46848 * 269.99807 * 1 2 3 26 26 H 1.09001 * 109.47161 * 30.00131 * 1 2 3 27 27 H 1.09004 * 109.46755 * 150.00284 * 1 2 3 28 28 H 1.07994 * 125.65406 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46977 * 319.99735 * 8 7 2 30 30 H 1.09006 * 109.46936 * 199.99703 * 8 7 2 31 31 H 0.96998 * 120.00276 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.72364 * 0.02741 * 11 10 9 33 33 H 1.08008 * 119.88475 * 179.72400 * 12 11 10 34 34 H 0.96998 * 120.00692 * 180.25026 * 14 13 12 35 35 H 0.97007 * 119.99720 * 0.25429 * 14 13 12 36 36 H 0.96997 * 120.00163 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11324 * 359.94920 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 7 3.5913 -0.6400 0.0043 6 1 4.3914 -1.1884 0.0087 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5275 0.0018 9 7 1.4717 -2.9227 -1.3579 10 6 1.0171 -4.2214 -1.6082 11 6 0.9232 -5.1386 -0.5599 12 6 0.4823 -6.4262 -0.7916 13 6 0.1161 -6.8194 -2.0707 14 7 -0.3332 -8.1130 -2.3012 15 6 0.2076 -5.8970 -3.1406 16 6 -0.1554 -6.2852 -4.4468 17 1 -0.8637 -7.0870 -4.5947 18 6 0.4019 -5.6318 -5.5511 19 7 1.4643 -4.8821 -5.4004 20 14 -0.3701 -5.8290 -7.2406 21 1 -1.5531 -6.7212 -7.1432 22 1 -0.7938 -4.4997 -7.7495 23 1 0.6226 -6.4222 -8.1723 24 6 0.6646 -4.5903 -2.8905 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 4.4004 1.3688 -0.0003 29 1 0.9878 -2.6380 0.6629 30 1 2.6602 -3.1630 0.3534 31 1 1.5382 -2.2837 -2.0846 32 1 1.2020 -4.8397 0.4397 33 1 0.4180 -7.1284 0.0265 34 1 -0.5852 -8.3865 -3.1971 35 1 -0.3950 -8.7431 -1.5663 36 1 1.8510 -4.4293 -6.1661 37 1 0.7386 -3.8781 -3.6989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000380016005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:24 Heat of formation + Delta-G solvation = 76.580952 kcal Electronic energy + Delta-G solvation = -19990.035925 eV Core-core repulsion = 16960.372753 eV Total energy + Delta-G solvation = -3029.663172 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.04655 -37.95551 -35.48949 -33.48012 -33.05643 -32.46639 -30.52597 -29.42745 -27.90006 -26.13488 -24.80471 -24.12999 -21.69154 -21.09045 -19.75489 -19.47376 -17.78949 -17.12146 -16.02106 -15.51744 -15.31038 -14.85594 -14.83486 -14.63855 -14.05087 -13.25688 -13.10996 -12.72258 -12.64592 -12.46269 -12.24342 -11.97497 -11.86258 -11.75301 -11.37250 -11.12939 -11.00092 -10.39010 -10.07546 -9.89572 -9.81676 -9.74122 -9.36251 -9.08205 -8.22773 -7.81341 -7.24710 -6.62851 -5.57881 -4.08762 1.99589 2.88335 3.11115 3.13372 3.14841 3.17396 3.28731 3.45027 4.02264 4.53923 4.61835 4.79957 4.97283 5.18704 5.37368 5.40851 5.54953 5.86127 5.87101 5.90094 6.08136 6.15008 6.32854 6.36346 6.58698 6.80960 7.07432 7.12217 7.30091 7.38623 7.45895 7.66161 7.85039 7.97334 8.07922 8.10459 8.43526 8.70773 8.85882 8.91239 8.97957 9.23824 9.31653 10.35463 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004737 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.434775 B = 5908.902625 C = 6835.540882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.018 3.982 3 N -0.496 5.496 4 C 0.183 3.817 5 N -0.562 5.562 6 H 0.420 0.580 7 C -0.031 4.031 8 C 0.216 3.784 9 N -0.758 5.758 10 C 0.176 3.824 11 C -0.256 4.256 12 C -0.153 4.153 13 C 0.086 3.914 14 N -0.889 5.889 15 C 0.095 3.905 16 C -0.462 4.462 17 H 0.072 0.928 18 C 0.076 3.924 19 N -0.801 5.801 20 Si 0.902 3.098 21 H -0.263 1.263 22 H -0.275 1.275 23 H -0.278 1.278 24 C -0.199 4.199 25 H 0.065 0.935 26 H 0.067 0.933 27 H 0.076 0.924 28 H 0.206 0.794 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.390 0.610 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.389 0.611 35 H 0.374 0.626 36 H 0.274 0.726 37 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.031 5.552 7.498 9.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.112 4.112 3 N -0.216 5.216 4 C -0.102 4.102 5 N -0.166 5.166 6 H 0.257 0.743 7 C -0.146 4.146 8 C 0.090 3.910 9 N -0.394 5.394 10 C 0.078 3.922 11 C -0.280 4.280 12 C -0.177 4.177 13 C -0.015 4.015 14 N -0.431 5.431 15 C 0.090 3.910 16 C -0.494 4.494 17 H 0.090 0.910 18 C -0.140 4.140 19 N -0.427 5.427 20 Si 0.727 3.273 21 H -0.187 1.187 22 H -0.200 1.200 23 H -0.204 1.204 24 C -0.224 4.224 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.095 0.905 28 H 0.223 0.777 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.223 0.777 32 H 0.102 0.898 33 H 0.102 0.898 34 H 0.217 0.783 35 H 0.199 0.801 36 H 0.085 0.915 37 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 2.931 6.579 7.553 10.437 hybrid contribution 0.664 -1.153 -1.111 1.734 sum 3.595 5.426 6.442 9.158 Atomic orbital electron populations 1.20090 0.87540 1.03162 1.02087 1.20579 0.96578 0.87734 1.06331 1.70179 1.00570 1.30868 1.19962 1.24887 0.97339 0.82065 1.05859 1.43249 1.08316 1.08604 1.56403 0.74261 1.21247 0.83725 0.97384 1.12264 1.19223 0.98657 0.85727 0.87415 1.44346 1.76803 1.11773 1.06464 1.17491 0.97403 0.83289 0.93980 1.19590 1.17994 0.94589 0.95841 1.19691 1.08132 0.95933 0.93957 1.17866 1.04167 0.85678 0.93760 1.41820 1.79206 1.11128 1.10996 1.16979 0.92864 0.89917 0.91280 1.19177 1.23143 1.16805 0.90226 0.91035 1.25750 0.93533 0.93879 1.00817 1.69877 1.16085 1.24583 1.32201 0.86377 0.80036 0.78920 0.81967 1.18692 1.19997 1.20351 1.20524 1.11645 0.96900 0.93295 0.91606 0.91380 0.90470 0.77718 0.91175 0.93146 0.77681 0.89779 0.89764 0.78327 0.80096 0.91524 0.86281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.95 10.22 36.01 0.37 -0.58 16 2 C 0.02 0.26 7.09 -82.85 -0.59 -0.32 16 3 N -0.50 -7.39 11.25 -10.87 -0.12 -7.51 16 4 C 0.18 2.09 13.04 -90.37 -1.18 0.91 16 5 N -0.56 -6.39 6.15 -10.30 -0.06 -6.45 16 6 H 0.42 3.57 8.96 -40.82 -0.37 3.21 16 7 C -0.03 -0.43 6.61 -81.60 -0.54 -0.97 16 8 C 0.22 3.31 4.98 -5.19 -0.03 3.28 16 9 N -0.76 -14.18 5.73 -59.81 -0.34 -14.52 16 10 C 0.18 3.99 6.64 -83.77 -0.56 3.44 16 11 C -0.26 -5.64 9.31 -39.14 -0.36 -6.00 16 12 C -0.15 -3.43 9.86 -39.47 -0.39 -3.82 16 13 C 0.09 2.06 6.79 -83.22 -0.56 1.49 16 14 N -0.89 -17.95 8.98 32.75 0.29 -17.66 16 15 C 0.09 2.48 5.58 -106.66 -0.60 1.89 16 16 C -0.46 -12.04 8.50 -37.91 -0.32 -12.36 16 17 H 0.07 1.78 6.67 -52.49 -0.35 1.43 16 18 C 0.08 1.91 5.18 -17.33 -0.09 1.82 16 19 N -0.80 -20.83 10.88 55.55 0.60 -20.22 16 20 Si 0.90 18.88 29.59 -169.99 -5.03 13.85 16 21 H -0.26 -5.43 7.11 56.52 0.40 -5.03 16 22 H -0.27 -5.73 7.11 56.52 0.40 -5.32 16 23 H -0.28 -5.77 7.11 56.52 0.40 -5.36 16 24 C -0.20 -5.10 8.50 -38.75 -0.33 -5.43 16 25 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 26 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.08 1.08 7.89 -51.93 -0.41 0.67 16 28 H 0.21 1.44 8.06 -52.49 -0.42 1.01 16 29 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 30 H 0.05 0.76 7.94 -51.93 -0.41 0.34 16 31 H 0.39 7.40 8.47 -40.82 -0.35 7.05 16 32 H 0.08 1.65 6.69 -52.49 -0.35 1.30 16 33 H 0.08 1.69 8.06 -52.48 -0.42 1.26 16 34 H 0.39 7.72 7.04 -40.82 -0.29 7.43 16 35 H 0.37 6.37 8.83 -40.82 -0.36 6.01 16 36 H 0.27 6.57 8.30 -40.82 -0.34 6.23 16 37 H 0.12 3.20 6.14 -52.49 -0.32 2.88 16 LS Contribution 313.48 15.07 4.72 4.72 Total: -1.00 -30.29 313.48 -9.55 -39.84 By element: Atomic # 1 Polarization: 29.04 SS G_CDS: -4.44 Total: 24.60 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: -5.18 Total: -16.65 kcal Atomic # 7 Polarization: -66.74 SS G_CDS: 0.37 Total: -66.37 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -30.29 -9.55 -39.84 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380016005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.426 kcal (2) G-P(sol) polarization free energy of solvation -30.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 86.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.845 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds