Wall clock time and date at job start Mon Mar 30 2020 04:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.34134 * 125.98972 * 2 1 4 4 C 1.30494 * 109.26004 * 180.02562 * 3 2 1 5 5 N 1.35052 * 108.69794 * 359.76604 * 4 3 2 6 6 H 0.96996 * 126.39592 * 180.26939 * 5 4 3 7 7 C 1.34667 * 125.99243 * 179.97438 * 2 1 3 8 8 C 1.50702 * 126.59039 * 359.96670 * 7 2 1 9 9 N 1.46496 * 109.47022 * 79.99966 * 8 7 2 10 10 C 1.39853 * 119.99949 * 180.02562 * 9 8 7 11 11 C 1.39609 * 119.83829 * 359.97438 * 10 9 8 12 12 C 1.38053 * 120.54581 * 180.30206 * 11 10 9 13 13 C 1.38733 * 120.22468 * 359.44619 * 12 11 10 14 14 N 1.38864 * 120.16759 * 180.29941 * 13 12 11 15 15 C 1.41567 * 119.67261 * 0.55003 * 13 12 11 16 16 C 1.41023 * 120.26645 * 179.70364 * 15 13 12 17 17 H 1.07997 * 120.00236 * 25.57142 * 16 15 13 18 18 C 1.39891 * 119.99629 * 205.56943 * 16 15 13 19 19 N 1.30897 * 120.00368 * 15.35441 * 18 16 15 20 20 Si 1.86798 * 119.99689 * 195.35812 * 18 16 15 21 21 H 1.48500 * 109.47523 * 0.02562 * 20 18 16 22 22 H 1.48508 * 109.47109 * 119.99964 * 20 18 16 23 23 H 1.48499 * 109.47401 * 239.99959 * 20 18 16 24 24 C 1.38003 * 119.84112 * 180.02562 * 10 9 8 25 25 H 1.09002 * 109.46848 * 269.99807 * 1 2 3 26 26 H 1.09001 * 109.47161 * 30.00131 * 1 2 3 27 27 H 1.09004 * 109.46755 * 150.00284 * 1 2 3 28 28 H 1.07994 * 125.65406 * 180.02562 * 4 3 2 29 29 H 1.08999 * 109.46977 * 319.99735 * 8 7 2 30 30 H 1.09006 * 109.46936 * 199.99703 * 8 7 2 31 31 H 0.96998 * 120.00276 * 0.02562 * 9 8 7 32 32 H 1.07998 * 119.72364 * 0.02741 * 11 10 9 33 33 H 1.08008 * 119.88475 * 179.72400 * 12 11 10 34 34 H 0.96998 * 120.00692 * 180.25026 * 14 13 12 35 35 H 0.97007 * 119.99720 * 0.25429 * 14 13 12 36 36 H 0.96997 * 120.00163 * 179.97438 * 19 18 16 37 37 H 1.07998 * 120.11324 * 359.94920 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 7 3.5913 -0.6400 0.0043 6 1 4.3914 -1.1884 0.0087 7 6 2.2984 -1.0896 0.0005 8 6 1.8473 -2.5275 0.0018 9 7 1.4717 -2.9227 -1.3579 10 6 1.0171 -4.2214 -1.6082 11 6 0.9232 -5.1386 -0.5599 12 6 0.4823 -6.4262 -0.7916 13 6 0.1161 -6.8194 -2.0707 14 7 -0.3332 -8.1130 -2.3012 15 6 0.2076 -5.8970 -3.1406 16 6 -0.1554 -6.2852 -4.4468 17 1 -0.8637 -7.0870 -4.5947 18 6 0.4019 -5.6318 -5.5511 19 7 1.4643 -4.8821 -5.4004 20 14 -0.3701 -5.8290 -7.2406 21 1 -1.5531 -6.7212 -7.1432 22 1 -0.7938 -4.4997 -7.7495 23 1 0.6226 -6.4222 -8.1723 24 6 0.6646 -4.5903 -2.8905 25 1 -0.3633 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8901 -0.5138 28 1 4.4004 1.3688 -0.0003 29 1 0.9878 -2.6380 0.6629 30 1 2.6602 -3.1630 0.3534 31 1 1.5382 -2.2837 -2.0846 32 1 1.2020 -4.8397 0.4397 33 1 0.4180 -7.1284 0.0265 34 1 -0.5852 -8.3865 -3.1971 35 1 -0.3950 -8.7431 -1.5663 36 1 1.8510 -4.4293 -6.1661 37 1 0.7386 -3.8781 -3.6989 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000380016005.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:58:23 Heat of formation + Delta-G solvation = 56.965199 kcal Electronic energy + Delta-G solvation = -19990.886528 eV Core-core repulsion = 16960.372753 eV Total energy + Delta-G solvation = -3030.513775 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -43.04817 -39.70158 -37.04252 -35.32305 -34.05945 -33.95301 -31.83335 -31.27578 -29.25842 -27.56602 -26.56483 -25.45823 -23.07222 -22.49679 -21.46551 -20.58097 -18.92006 -18.86480 -17.65173 -17.22368 -16.76423 -16.35797 -16.18241 -15.87380 -15.45763 -14.68739 -14.50614 -14.19763 -13.86528 -13.74583 -13.66036 -13.56258 -13.43018 -13.10598 -13.01022 -12.83554 -12.69986 -12.09476 -11.78045 -11.48876 -11.17534 -10.94503 -10.93611 -10.83634 -9.41811 -9.27987 -9.12485 -8.48907 -7.29896 -5.99252 0.96242 1.12874 1.41591 1.51783 1.54696 1.66241 2.09632 2.23593 2.27461 2.93105 3.12373 3.66770 3.79550 3.92545 3.97595 4.15181 4.41316 4.49275 4.61865 4.65660 4.84201 4.87369 5.04629 5.07959 5.24996 5.27338 5.35257 5.44601 5.67199 5.75696 5.89321 6.08261 6.18307 6.28558 6.54607 6.58454 6.97609 7.06489 7.09441 7.14701 7.21093 7.48435 7.68870 8.51321 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.019076 B = 0.004737 C = 0.004095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.434775 B = 5908.902625 C = 6835.540882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.001 3.999 3 N -0.535 5.535 4 C 0.201 3.799 5 N -0.554 5.554 6 H 0.434 0.566 7 C -0.045 4.045 8 C 0.222 3.778 9 N -0.752 5.752 10 C 0.175 3.825 11 C -0.255 4.255 12 C -0.157 4.157 13 C 0.071 3.929 14 N -0.880 5.880 15 C 0.060 3.940 16 C -0.491 4.491 17 H 0.074 0.926 18 C 0.033 3.967 19 N -0.834 5.834 20 Si 0.972 3.028 21 H -0.258 1.258 22 H -0.273 1.273 23 H -0.272 1.272 24 C -0.224 4.224 25 H 0.078 0.922 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.250 0.750 29 H 0.073 0.927 30 H 0.060 0.940 31 H 0.386 0.614 32 H 0.111 0.889 33 H 0.112 0.888 34 H 0.389 0.611 35 H 0.390 0.610 36 H 0.278 0.722 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.724 5.690 8.458 10.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.128 4.128 3 N -0.256 5.256 4 C -0.083 4.083 5 N -0.158 5.158 6 H 0.274 0.726 7 C -0.161 4.161 8 C 0.096 3.904 9 N -0.387 5.387 10 C 0.076 3.924 11 C -0.278 4.278 12 C -0.182 4.182 13 C -0.032 4.032 14 N -0.424 5.424 15 C 0.054 3.946 16 C -0.522 4.522 17 H 0.092 0.908 18 C -0.179 4.179 19 N -0.462 5.462 20 Si 0.795 3.205 21 H -0.181 1.181 22 H -0.199 1.199 23 H -0.197 1.197 24 C -0.249 4.249 25 H 0.097 0.903 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.266 0.734 29 H 0.091 0.909 30 H 0.078 0.922 31 H 0.219 0.781 32 H 0.129 0.871 33 H 0.130 0.870 34 H 0.217 0.783 35 H 0.218 0.782 36 H 0.088 0.912 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 3.638 6.693 8.551 11.452 hybrid contribution 0.520 -1.119 -1.270 1.770 sum 4.158 5.574 7.281 10.069 Atomic orbital electron populations 1.20065 0.87336 1.02517 1.02711 1.20835 0.97215 0.88276 1.06512 1.70186 1.02057 1.31324 1.22000 1.25770 0.97605 0.82370 1.02581 1.43225 1.07980 1.08902 1.55699 0.72582 1.20972 0.84894 0.96428 1.13757 1.19237 0.99016 0.86789 0.85320 1.44396 1.76049 1.10303 1.07950 1.17553 0.96713 0.84951 0.93225 1.19930 1.16852 0.94301 0.96763 1.20060 1.07208 0.96701 0.94197 1.18047 1.04536 0.86682 0.93886 1.41702 1.78605 1.10312 1.11734 1.17352 0.94037 0.90831 0.92340 1.19427 1.23963 1.17770 0.91036 0.90823 1.26536 0.93651 0.93389 1.04337 1.69962 1.17278 1.25624 1.33349 0.85303 0.79178 0.78785 0.77233 1.18125 1.19859 1.19733 1.20481 1.13564 0.96816 0.94040 0.90340 0.91423 0.91628 0.73389 0.90868 0.92239 0.78119 0.87087 0.87009 0.78266 0.78183 0.91223 0.88587 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.82 10.22 71.24 0.73 -1.09 16 2 C 0.00 0.04 7.09 41.39 0.29 0.33 16 3 N -0.53 -15.11 11.25 -188.32 -2.12 -17.23 16 4 C 0.20 4.06 13.04 180.26 2.35 6.41 16 5 N -0.55 -11.27 6.15 -186.49 -1.15 -12.42 16 6 H 0.43 6.22 8.96 -92.71 -0.83 5.39 16 7 C -0.04 -1.19 6.61 40.95 0.27 -0.92 16 8 C 0.22 6.48 4.98 85.63 0.43 6.90 16 9 N -0.75 -28.01 5.73 -343.14 -1.97 -29.98 16 10 C 0.18 7.96 6.64 38.14 0.25 8.21 16 11 C -0.25 -10.82 9.31 22.56 0.21 -10.61 16 12 C -0.16 -6.82 9.86 22.34 0.22 -6.60 16 13 C 0.07 3.35 6.79 38.97 0.26 3.62 16 14 N -0.88 -34.89 8.98 -50.31 -0.45 -35.34 16 15 C 0.06 3.19 5.58 -21.18 -0.12 3.07 16 16 C -0.49 -26.17 8.50 23.35 0.20 -25.97 16 17 H 0.07 3.73 6.67 -2.91 -0.02 3.71 16 18 C 0.03 1.70 5.18 85.23 0.44 2.14 16 19 N -0.83 -44.74 10.88 21.82 0.24 -44.50 16 20 Si 0.97 39.37 29.59 68.60 2.03 41.40 16 21 H -0.26 -10.08 7.11 99.48 0.71 -9.37 16 22 H -0.27 -10.89 7.11 99.48 0.71 -10.18 16 23 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 24 C -0.22 -11.83 8.50 22.81 0.19 -11.63 16 25 H 0.08 1.83 8.14 -2.39 -0.02 1.81 16 26 H 0.07 1.75 8.14 -2.39 -0.02 1.74 16 27 H 0.06 1.86 7.89 -2.39 -0.02 1.84 16 28 H 0.25 2.44 8.06 -2.91 -0.02 2.42 16 29 H 0.07 2.11 7.94 -2.39 -0.02 2.09 16 30 H 0.06 1.65 7.94 -2.38 -0.02 1.63 16 31 H 0.39 14.89 8.47 -92.71 -0.79 14.11 16 32 H 0.11 4.06 6.69 -2.91 -0.02 4.04 16 33 H 0.11 4.15 8.06 -2.91 -0.02 4.13 16 34 H 0.39 15.37 7.04 -92.71 -0.65 14.72 16 35 H 0.39 12.68 8.83 -92.70 -0.82 11.86 16 36 H 0.28 13.70 8.30 -92.71 -0.77 12.93 16 37 H 0.10 5.42 6.14 -2.91 -0.02 5.40 16 Total: -1.00 -66.29 313.48 0.38 -65.91 By element: Atomic # 1 Polarization: 60.24 SS G_CDS: -1.94 Total: 58.30 kcal Atomic # 6 Polarization: -31.88 SS G_CDS: 5.73 Total: -26.14 kcal Atomic # 7 Polarization: -134.02 SS G_CDS: -5.45 Total: -139.47 kcal Atomic # 14 Polarization: 39.37 SS G_CDS: 2.03 Total: 41.40 kcal Total: -66.29 0.38 -65.91 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000380016005.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.871 kcal (2) G-P(sol) polarization free energy of solvation -66.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.906 kcal (6) G-S(sol) free energy of system = (1) + (5) 56.965 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds