Wall clock time and date at job start Mon Mar 30 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47270 * 239.99791 * 3 2 1 5 5 H 1.48497 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47025 * 119.99558 * 3 2 1 7 7 C 1.37869 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00480 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99999 * 90.00206 * 10 9 7 12 12 C 1.52999 * 109.46951 * 269.99962 * 11 10 9 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 C 1.39674 * 120.00388 * 270.00028 * 10 9 7 19 19 C 1.38912 * 120.07683 * 179.72536 * 18 10 9 20 20 C 1.38105 * 119.92355 * 179.77434 * 19 18 10 21 21 C 1.38287 * 120.07620 * 0.49781 * 20 19 18 22 22 C 1.38289 * 120.14503 * 359.75437 * 21 20 19 23 23 C 1.38099 * 120.07772 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46983 * 59.99357 * 9 7 2 26 26 H 1.09005 * 109.47309 * 300.00110 * 9 7 2 27 27 H 1.09002 * 109.47315 * 149.99757 * 11 10 9 28 28 H 1.08996 * 109.46995 * 29.99608 * 11 10 9 29 29 H 1.09002 * 109.47279 * 59.99772 * 12 11 10 30 30 H 1.08995 * 109.47424 * 299.99951 * 12 11 10 31 31 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 32 32 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.03605 * 359.97438 * 19 18 10 34 34 H 1.08002 * 119.96324 * 180.25113 * 20 19 18 35 35 H 1.07993 * 119.92575 * 179.72490 * 21 20 19 36 36 H 1.08005 * 119.95741 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.03422 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 2.6791 -4.1693 1.2693 12 6 3.9412 -3.4258 1.7110 13 7 4.4169 -3.9821 2.9800 14 6 5.6438 -4.4675 3.2374 15 7 5.6688 -4.8684 4.4826 16 6 4.4821 -4.6557 5.0498 17 7 3.6801 -4.1193 4.1678 18 6 2.6570 -4.1434 -1.2090 19 6 3.5641 -5.1955 -1.2108 20 6 4.0072 -5.7210 -2.4086 21 6 3.5569 -5.1944 -3.6053 22 6 2.6579 -4.1436 -3.6071 23 6 2.2064 -3.6170 -2.4130 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.9075 -5.2272 1.1390 28 1 1.9058 -4.0555 2.0289 29 1 3.7129 -2.3679 1.8413 30 1 4.7146 -3.5395 0.9514 31 1 6.4652 -4.5185 2.5381 32 1 4.2232 -4.8928 6.0711 33 1 3.9199 -5.6041 -0.2765 34 1 4.7094 -6.5417 -2.4107 35 1 3.9084 -5.6043 -4.5406 36 1 2.3085 -3.7343 -4.5435 37 1 1.5046 -2.7961 -2.4151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381182318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:18 Heat of formation + Delta-G solvation = 126.416967 kcal Electronic energy + Delta-G solvation = -20329.670026 eV Core-core repulsion = 17302.167906 eV Total energy + Delta-G solvation = -3027.502120 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.90499 -39.06933 -36.27428 -33.96973 -32.72160 -31.08683 -30.57173 -29.65696 -28.61671 -26.42592 -23.88131 -22.93271 -21.85654 -21.69315 -21.09319 -19.83703 -17.37218 -17.09800 -16.44142 -15.63949 -15.19034 -14.94921 -14.74546 -14.34821 -14.23637 -13.98009 -13.36999 -13.30264 -12.92308 -12.76797 -12.29399 -12.15532 -11.80001 -11.37557 -11.28028 -10.94867 -10.83883 -10.77235 -10.39245 -10.17351 -9.96510 -9.88000 -9.68086 -9.47442 -9.05439 -8.59381 -8.41161 -6.69272 -6.15000 -4.27907 1.77072 1.95398 2.15303 2.45317 3.06064 3.20769 3.26494 3.28116 3.91225 4.30335 4.39198 4.42943 4.68018 4.99888 5.12374 5.19593 5.30715 5.37339 5.44030 5.54788 5.66810 5.90966 5.95182 6.11205 6.19657 6.23812 6.37893 6.49610 6.54737 6.81426 6.92518 6.94038 7.05211 7.13867 7.24640 7.46787 7.68964 8.01902 8.07889 8.18129 8.29147 8.78311 9.39339 10.86192 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.007566 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.010495 B = 3699.981186 C = 5767.857476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.065 3.935 3 Si 0.894 3.106 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.277 1.277 7 C -0.536 4.536 8 H 0.059 0.941 9 C 0.250 3.750 10 N -0.609 5.609 11 C 0.127 3.873 12 C 0.105 3.895 13 N -0.365 5.365 14 C 0.247 3.753 15 N -0.555 5.555 16 C 0.186 3.814 17 N -0.312 5.312 18 C 0.233 3.767 19 C -0.220 4.220 20 C -0.079 4.079 21 C -0.199 4.199 22 C -0.077 4.077 23 C -0.181 4.181 24 H 0.266 0.734 25 H 0.038 0.962 26 H 0.032 0.968 27 H 0.066 0.934 28 H 0.085 0.915 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.215 0.785 32 H 0.213 0.787 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.107 0.893 36 H 0.113 0.887 37 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.879 -9.170 0.162 12.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.138 4.138 3 Si 0.721 3.279 4 H -0.201 1.201 5 H -0.211 1.211 6 H -0.203 1.203 7 C -0.575 4.575 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.316 5.316 11 C 0.001 3.999 12 C -0.018 4.018 13 N -0.156 5.156 14 C -0.050 4.050 15 N -0.283 5.283 16 C -0.116 4.116 17 N -0.140 5.140 18 C 0.128 3.872 19 C -0.243 4.243 20 C -0.097 4.097 21 C -0.219 4.219 22 C -0.096 4.096 23 C -0.203 4.203 24 H 0.075 0.925 25 H 0.056 0.944 26 H 0.050 0.950 27 H 0.084 0.916 28 H 0.103 0.897 29 H 0.127 0.873 30 H 0.117 0.883 31 H 0.232 0.768 32 H 0.230 0.770 33 H 0.128 0.872 34 H 0.127 0.873 35 H 0.125 0.875 36 H 0.131 0.869 37 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 7.096 -8.847 0.573 11.356 hybrid contribution 0.647 1.146 -0.197 1.331 sum 7.743 -7.701 0.376 10.927 Atomic orbital electron populations 1.69908 1.05995 1.27400 1.49621 1.24936 0.94830 0.99199 0.94817 0.86623 0.79642 0.82894 0.78716 1.20065 1.21095 1.20264 1.21476 0.93367 0.90622 1.52028 0.92309 1.19349 0.87139 0.82145 0.98333 1.47079 1.47327 1.36630 1.00564 1.21328 0.95036 0.96047 0.87467 1.22723 0.99084 1.01003 0.79020 1.50672 1.09274 1.44905 1.10714 1.26018 0.89832 0.94388 0.94770 1.70504 1.24606 1.26677 1.06522 1.25960 0.87409 0.97691 1.00586 1.78100 1.20235 1.23577 0.92124 1.17937 0.91487 0.91041 0.86687 1.20573 1.04512 1.01283 0.97969 1.20691 0.98400 0.98403 0.92246 1.20710 1.03202 1.00803 0.97214 1.20864 0.96110 0.95440 0.97195 1.20940 1.05136 1.03521 0.90693 0.92452 0.94389 0.94984 0.91566 0.89712 0.87255 0.88332 0.76837 0.77015 0.87168 0.87287 0.87492 0.86936 0.84876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -24.64 13.29 55.43 0.74 -23.91 16 2 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 3 Si 0.89 20.52 29.54 -169.99 -5.02 15.50 16 4 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 5 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 6 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 7 C -0.54 -13.52 8.92 -34.45 -0.31 -13.82 16 8 H 0.06 1.47 7.42 -52.48 -0.39 1.08 16 9 C 0.25 5.81 4.96 -5.20 -0.03 5.79 16 10 N -0.61 -11.72 2.59 -173.12 -0.45 -12.17 16 11 C 0.13 2.11 5.40 -4.04 -0.02 2.08 16 12 C 0.10 1.60 6.87 -4.04 -0.03 1.57 16 13 N -0.36 -5.37 3.69 -62.63 -0.23 -5.60 16 14 C 0.25 3.13 12.63 -90.65 -1.14 1.98 16 15 N -0.56 -7.84 11.19 -15.83 -0.18 -8.02 16 16 C 0.19 2.57 13.03 -91.81 -1.20 1.37 16 17 N -0.31 -5.01 12.56 29.29 0.37 -4.64 16 18 C 0.23 4.29 6.55 -83.79 -0.55 3.74 16 19 C -0.22 -3.48 9.20 -39.38 -0.36 -3.84 16 20 C -0.08 -1.13 10.04 -39.61 -0.40 -1.53 16 21 C -0.20 -2.92 10.04 -39.54 -0.40 -3.31 16 22 C -0.08 -1.24 10.04 -39.61 -0.40 -1.64 16 23 C -0.18 -3.39 9.21 -39.38 -0.36 -3.75 16 24 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.04 0.94 6.20 -51.93 -0.32 0.62 16 26 H 0.03 0.80 7.89 -51.93 -0.41 0.39 16 27 H 0.07 1.00 6.21 -51.93 -0.32 0.68 16 28 H 0.08 1.52 7.89 -51.93 -0.41 1.11 16 29 H 0.11 1.97 7.26 -51.93 -0.38 1.60 16 30 H 0.10 1.32 8.09 -51.93 -0.42 0.90 16 31 H 0.22 1.77 8.06 -52.49 -0.42 1.35 16 32 H 0.21 2.09 8.06 -52.49 -0.42 1.67 16 33 H 0.11 1.56 6.15 -52.48 -0.32 1.24 16 34 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 35 H 0.11 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 37 H 0.13 2.76 6.14 -52.49 -0.32 2.44 16 LS Contribution 318.39 15.07 4.80 4.80 Total: -1.00 -29.25 318.39 -9.81 -39.06 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: -4.54 Total: 4.73 kcal Atomic # 6 Polarization: -4.46 SS G_CDS: -5.29 Total: -9.75 kcal Atomic # 7 Polarization: -54.59 SS G_CDS: 0.25 Total: -54.34 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.25 -9.81 -39.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381182318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.478 kcal (2) G-P(sol) polarization free energy of solvation -29.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.807 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.417 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds