Wall clock time and date at job start Mon Mar 30 2020 04:47:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86800 * 119.99670 * 2 1 4 4 H 1.48494 * 109.47270 * 239.99791 * 3 2 1 5 5 H 1.48497 * 109.47240 * 0.02562 * 3 2 1 6 6 H 1.48504 * 109.47025 * 119.99558 * 3 2 1 7 7 C 1.37869 * 119.99938 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99829 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00480 * 0.02562 * 7 2 1 10 10 N 1.46494 * 109.47437 * 179.97438 * 9 7 2 11 11 C 1.46506 * 119.99999 * 90.00206 * 10 9 7 12 12 C 1.52999 * 109.46951 * 269.99962 * 11 10 9 13 13 N 1.46500 * 109.47084 * 179.97438 * 12 11 10 14 14 C 1.34429 * 126.81895 * 124.99739 * 13 12 11 15 15 N 1.30837 * 108.07952 * 180.02562 * 14 13 12 16 16 C 1.33246 * 109.82318 * 359.97438 * 15 14 13 17 17 N 1.30712 * 108.94935 * 0.27015 * 16 15 14 18 18 C 1.39674 * 120.00388 * 270.00028 * 10 9 7 19 19 C 1.38912 * 120.07683 * 179.72536 * 18 10 9 20 20 C 1.38105 * 119.92355 * 179.77434 * 19 18 10 21 21 C 1.38287 * 120.07620 * 0.49781 * 20 19 18 22 22 C 1.38289 * 120.14503 * 359.75437 * 21 20 19 23 23 C 1.38099 * 120.07772 * 359.97438 * 22 21 20 24 24 H 0.97001 * 120.00222 * 0.02562 * 1 2 3 25 25 H 1.09005 * 109.46983 * 59.99357 * 9 7 2 26 26 H 1.09005 * 109.47309 * 300.00110 * 9 7 2 27 27 H 1.09002 * 109.47315 * 149.99757 * 11 10 9 28 28 H 1.08996 * 109.46995 * 29.99608 * 11 10 9 29 29 H 1.09002 * 109.47279 * 59.99772 * 12 11 10 30 30 H 1.08995 * 109.47424 * 299.99951 * 12 11 10 31 31 H 1.08000 * 125.96340 * 359.97438 * 14 13 12 32 32 H 1.08002 * 125.52127 * 179.97438 * 16 15 14 33 33 H 1.08004 * 120.03605 * 359.97438 * 19 18 10 34 34 H 1.08002 * 119.96324 * 180.25113 * 20 19 18 35 35 H 1.07993 * 119.92575 * 179.72490 * 21 20 19 36 36 H 1.08005 * 119.95741 * 179.97438 * 22 21 20 37 37 H 1.07998 * 120.03422 * 179.97438 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2124 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2031 -3.6125 0.0005 11 6 2.6791 -4.1693 1.2693 12 6 3.9412 -3.4258 1.7110 13 7 4.4169 -3.9821 2.9800 14 6 5.6438 -4.4675 3.2374 15 7 5.6688 -4.8684 4.4826 16 6 4.4821 -4.6557 5.0498 17 7 3.6801 -4.1193 4.1678 18 6 2.6570 -4.1434 -1.2090 19 6 3.5641 -5.1955 -1.2108 20 6 4.0072 -5.7210 -2.4086 21 6 3.5569 -5.1944 -3.6053 22 6 2.6579 -4.1436 -3.6071 23 6 2.2064 -3.6170 -2.4130 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5570 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 2.9075 -5.2272 1.1390 28 1 1.9058 -4.0555 2.0289 29 1 3.7129 -2.3679 1.8413 30 1 4.7146 -3.5395 0.9514 31 1 6.4652 -4.5185 2.5381 32 1 4.2232 -4.8928 6.0711 33 1 3.9199 -5.6041 -0.2765 34 1 4.7094 -6.5417 -2.4107 35 1 3.9084 -5.6043 -4.5406 36 1 2.3085 -3.7343 -4.5435 37 1 1.5046 -2.7961 -2.4151 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381182318.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:18 Heat of formation + Delta-G solvation = 112.667440 kcal Electronic energy + Delta-G solvation = -20330.266251 eV Core-core repulsion = 17302.167906 eV Total energy + Delta-G solvation = -3028.098345 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.96669 -40.40902 -37.63384 -35.38078 -34.49495 -32.16863 -31.87325 -30.93643 -30.17994 -27.98594 -25.33574 -24.47749 -22.97081 -22.83932 -22.33620 -21.20956 -18.79562 -18.54328 -18.00930 -16.89433 -16.75616 -16.17776 -16.05083 -15.82116 -15.41710 -15.07450 -14.81421 -14.57945 -14.39540 -14.16913 -13.79504 -13.49088 -13.16982 -13.04479 -12.94599 -12.56315 -12.35250 -12.17628 -12.00509 -11.82617 -11.42167 -11.01386 -10.82032 -10.77753 -10.63242 -10.45669 -9.67004 -8.38461 -7.91796 -6.35967 0.69378 0.72806 0.89844 1.33907 1.37081 1.37492 1.45136 2.03435 2.31657 2.53608 3.07839 3.15970 3.53121 3.53337 3.86659 4.04672 4.12324 4.19097 4.28501 4.32890 4.49477 4.63422 4.72949 4.78442 4.87760 4.95297 5.10886 5.19555 5.28373 5.33210 5.51767 5.57793 5.68891 5.76608 5.89572 5.91124 6.05626 6.20438 6.44855 6.79069 6.87090 7.13945 7.35234 8.83765 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.010422 B = 0.007566 C = 0.004853 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2686.010495 B = 3699.981186 C = 5767.857476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.927 5.927 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.269 1.269 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.533 4.533 8 H 0.060 0.940 9 C 0.269 3.731 10 N -0.618 5.618 11 C 0.135 3.865 12 C 0.121 3.879 13 N -0.377 5.377 14 C 0.260 3.740 15 N -0.573 5.573 16 C 0.192 3.808 17 N -0.358 5.358 18 C 0.209 3.791 19 C -0.214 4.214 20 C -0.072 4.072 21 C -0.191 4.191 22 C -0.082 4.082 23 C -0.212 4.212 24 H 0.265 0.735 25 H 0.014 0.986 26 H 0.003 0.997 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.124 0.876 31 H 0.258 0.742 32 H 0.242 0.758 33 H 0.130 0.870 34 H 0.148 0.852 35 H 0.140 0.860 36 H 0.128 0.872 37 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.976 -10.809 -0.567 15.415 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.567 5.567 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.194 1.194 5 H -0.210 1.210 6 H -0.198 1.198 7 C -0.572 4.572 8 H 0.078 0.922 9 C 0.147 3.853 10 N -0.326 5.326 11 C 0.010 3.990 12 C -0.002 4.002 13 N -0.168 5.168 14 C -0.036 4.036 15 N -0.302 5.302 16 C -0.111 4.111 17 N -0.187 5.187 18 C 0.106 3.894 19 C -0.236 4.236 20 C -0.091 4.091 21 C -0.211 4.211 22 C -0.101 4.101 23 C -0.235 4.235 24 H 0.074 0.926 25 H 0.032 0.968 26 H 0.021 0.979 27 H 0.105 0.895 28 H 0.078 0.922 29 H 0.093 0.907 30 H 0.142 0.858 31 H 0.274 0.726 32 H 0.258 0.742 33 H 0.148 0.852 34 H 0.166 0.834 35 H 0.158 0.842 36 H 0.146 0.854 37 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 10.222 -10.515 -0.164 14.665 hybrid contribution -0.259 1.521 -0.017 1.543 sum 9.963 -8.994 -0.181 13.423 Atomic orbital electron populations 1.70032 1.07457 1.28027 1.51224 1.25730 0.95541 1.02530 0.94792 0.85657 0.78429 0.79039 0.78872 1.19374 1.20966 1.19770 1.21742 0.93438 0.91462 1.50576 0.92197 1.18791 0.87407 0.83424 0.95641 1.46790 1.47568 1.36171 1.02076 1.21280 0.94939 0.97118 0.85688 1.22388 0.99163 0.98710 0.79987 1.50576 1.10020 1.45976 1.10195 1.26915 0.89727 0.92009 0.94949 1.70578 1.24701 1.27591 1.07293 1.26603 0.86991 0.96048 1.01434 1.78080 1.21956 1.25462 0.93183 1.18175 0.92966 0.92460 0.85799 1.20810 1.03205 0.99922 0.99714 1.21162 0.98004 0.98611 0.91278 1.21126 1.01593 0.99410 0.98966 1.21095 0.96327 0.95950 0.96713 1.20851 1.06143 1.03937 0.92523 0.92565 0.96825 0.97896 0.89480 0.92193 0.90711 0.85800 0.72592 0.74160 0.85185 0.83400 0.84233 0.85442 0.88498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -53.62 13.29 21.45 0.28 -53.33 16 2 C 0.01 0.73 5.46 84.65 0.46 1.19 16 3 Si 0.95 42.94 29.54 68.60 2.03 44.96 16 4 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 5 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 6 H -0.27 -11.96 7.11 99.48 0.71 -11.26 16 7 C -0.53 -28.03 8.92 25.60 0.23 -27.80 16 8 H 0.06 3.07 7.42 -2.91 -0.02 3.05 16 9 C 0.27 13.37 4.96 85.63 0.42 13.80 16 10 N -0.62 -24.56 2.59 -701.63 -1.82 -26.38 16 11 C 0.13 4.51 5.40 86.38 0.47 4.98 16 12 C 0.12 3.63 6.87 86.38 0.59 4.22 16 13 N -0.38 -10.64 3.69 -352.06 -1.30 -11.94 16 14 C 0.26 5.85 12.63 180.36 2.28 8.13 16 15 N -0.57 -14.88 11.19 -203.99 -2.28 -17.16 16 16 C 0.19 5.01 13.03 180.76 2.36 7.37 16 17 N -0.36 -11.39 12.56 -61.24 -0.77 -12.16 16 18 C 0.21 7.65 6.55 38.21 0.25 7.90 16 19 C -0.21 -6.13 9.20 22.40 0.21 -5.92 16 20 C -0.07 -1.75 10.04 22.25 0.22 -1.53 16 21 C -0.19 -4.87 10.04 22.29 0.22 -4.64 16 22 C -0.08 -2.54 10.04 22.25 0.22 -2.32 16 23 C -0.21 -8.16 9.21 22.40 0.21 -7.95 16 24 H 0.27 14.61 8.31 -92.71 -0.77 13.84 16 25 H 0.01 0.75 6.20 -2.38 -0.01 0.73 16 26 H 0.00 0.16 7.89 -2.38 -0.02 0.15 16 27 H 0.09 2.52 6.21 -2.39 -0.01 2.50 16 28 H 0.06 2.28 7.89 -2.39 -0.02 2.26 16 29 H 0.07 2.77 7.26 -2.39 -0.02 2.75 16 30 H 0.12 3.04 8.09 -2.39 -0.02 3.02 16 31 H 0.26 3.09 8.06 -2.91 -0.02 3.07 16 32 H 0.24 4.34 8.06 -2.91 -0.02 4.32 16 33 H 0.13 3.17 6.15 -2.91 -0.02 3.15 16 34 H 0.15 2.51 8.06 -2.91 -0.02 2.49 16 35 H 0.14 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.13 3.42 8.06 -2.91 -0.02 3.40 16 37 H 0.10 4.36 6.14 -2.91 -0.02 4.35 16 Total: -1.00 -66.42 318.39 5.35 -61.06 By element: Atomic # 1 Polarization: 16.47 SS G_CDS: 1.07 Total: 17.54 kcal Atomic # 6 Polarization: -10.73 SS G_CDS: 8.14 Total: -2.59 kcal Atomic # 7 Polarization: -115.09 SS G_CDS: -5.89 Total: -120.97 kcal Atomic # 14 Polarization: 42.94 SS G_CDS: 2.03 Total: 44.96 kcal Total: -66.42 5.35 -61.06 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381182318.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 173.728 kcal (2) G-P(sol) polarization free energy of solvation -66.416 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 107.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.355 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds