Wall clock time and date at job start Mon Mar 30 2020 04:49:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00688 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.43324 * 36.08922 * 14 13 12 16 16 C 1.54270 * 110.48800 * 273.54785 * 14 13 12 17 17 C 1.53869 * 106.59998 * 217.71066 * 16 14 13 18 18 C 1.54269 * 106.59803 * 359.97438 * 17 16 14 19 19 C 1.54885 * 110.48951 * 158.77078 * 14 13 12 20 20 H 1.09003 * 110.75978 * 38.30691 * 19 14 13 21 21 C 1.50705 * 110.75762 * 274.93679 * 19 14 13 22 22 N 1.34772 * 120.00015 * 179.97438 * 21 19 14 23 23 O 1.21275 * 119.99725 * 359.97438 * 21 19 14 24 24 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00184 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99813 * 11 10 9 29 29 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 30 30 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 31 31 H 1.00905 * 110.99920 * 56.03919 * 13 12 11 32 32 H 1.09000 * 110.02728 * 336.99593 * 16 14 13 33 33 H 1.09000 * 110.03505 * 98.37529 * 16 14 13 34 34 H 1.08997 * 110.03686 * 119.28213 * 17 16 14 35 35 H 1.09007 * 110.03468 * 240.71676 * 17 16 14 36 36 H 1.09003 * 110.48392 * 142.29277 * 18 17 16 37 37 H 1.09002 * 110.48861 * 264.79687 * 18 17 16 38 38 H 0.97005 * 120.00359 * 0.02562 * 22 21 19 39 39 H 0.96999 * 120.00372 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5956 -3.2365 0.0026 12 6 5.8612 -4.7432 0.0044 13 7 7.3102 -4.9851 0.0039 14 6 7.6038 -6.4244 0.0049 15 1 6.8707 -6.9627 -0.5959 16 6 7.6248 -6.9701 1.4477 17 6 8.7558 -8.0116 1.5073 18 6 9.3822 -8.0630 0.0985 19 6 9.0370 -6.6857 -0.5209 20 1 9.7249 -5.9185 -0.1654 21 6 9.0485 -6.7593 -2.0261 22 7 10.2054 -6.9808 -2.6811 23 8 8.0168 -6.6193 -2.6479 24 1 -0.4850 0.8401 -0.0004 25 1 3.6432 -3.4311 0.8927 26 1 3.6439 -3.4323 -0.8873 27 1 6.0385 -2.7901 -0.8877 28 1 6.0386 -2.7888 0.8922 29 1 5.4184 -5.1892 0.8950 30 1 5.4182 -5.1913 -0.8850 31 1 7.7540 -4.5246 0.7844 32 1 7.8249 -6.1609 2.1500 33 1 6.6701 -7.4406 1.6829 34 1 9.5049 -7.7080 2.2385 35 1 8.3503 -8.9885 1.7711 36 1 10.4627 -8.1906 0.1659 37 1 8.9397 -8.8691 -0.4867 38 1 11.0306 -7.0931 -2.1837 39 1 10.2128 -7.0285 -3.6499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381845173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:12 Heat of formation + Delta-G solvation = -70.101432 kcal Electronic energy + Delta-G solvation = -18362.891982 eV Core-core repulsion = 15430.019384 eV Total energy + Delta-G solvation = -2932.872597 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24166 -37.93429 -35.51879 -33.80457 -32.39294 -31.98814 -29.49674 -27.54448 -25.67162 -24.33122 -22.45173 -21.24127 -20.64908 -19.88179 -17.80405 -17.41577 -16.90290 -15.96152 -15.64173 -14.97341 -14.96182 -14.77356 -14.59889 -13.88712 -13.57847 -13.54441 -12.86046 -12.79606 -12.49553 -12.29825 -11.76904 -11.61263 -11.48933 -11.44017 -11.06828 -11.00649 -10.97570 -10.81366 -10.41132 -10.05249 -9.95943 -9.86056 -9.71320 -8.95774 -8.50193 -8.35732 -6.88221 -6.23785 -3.95299 2.54490 3.05831 3.32301 3.34386 3.49436 3.61703 4.02209 4.16535 4.34815 4.36547 4.59455 4.87820 4.91598 5.03197 5.10319 5.13101 5.14992 5.21238 5.27893 5.38671 5.44495 5.57233 5.65665 5.70401 5.73935 5.86962 5.89961 5.99300 6.13210 6.30962 6.58311 6.59410 6.72186 7.06246 7.14269 7.42071 8.00216 8.14315 8.49353 9.22325 10.85839 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003062 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.517586 B = 9142.384582 C = 9501.084120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.090 3.910 3 Si 0.863 3.137 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.501 4.501 8 H 0.087 0.913 9 S -0.217 6.217 10 C -0.081 4.081 11 C -0.098 4.098 12 C 0.067 3.933 13 N -0.678 5.678 14 C 0.103 3.897 15 H 0.096 0.904 16 C -0.157 4.157 17 C -0.119 4.119 18 C -0.114 4.114 19 C -0.106 4.106 20 H 0.105 0.895 21 C 0.528 3.472 22 N -0.862 5.862 23 O -0.528 6.528 24 H 0.270 0.730 25 H 0.065 0.935 26 H 0.068 0.932 27 H 0.074 0.926 28 H 0.062 0.938 29 H 0.029 0.971 30 H 0.074 0.926 31 H 0.337 0.663 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.067 0.933 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.070 0.930 38 H 0.398 0.602 39 H 0.399 0.601 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.877 -17.167 1.649 29.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.688 3.312 4 H -0.194 1.194 5 H -0.202 1.202 6 H -0.162 1.162 7 C -0.648 4.648 8 H 0.106 0.894 9 S 0.011 5.989 10 C -0.230 4.230 11 C -0.137 4.137 12 C -0.064 4.064 13 N -0.307 5.307 14 C -0.008 4.008 15 H 0.114 0.886 16 C -0.197 4.197 17 C -0.157 4.157 18 C -0.152 4.152 19 C -0.128 4.128 20 H 0.123 0.877 21 C 0.312 3.688 22 N -0.425 5.425 23 O -0.403 6.403 24 H 0.080 0.920 25 H 0.084 0.916 26 H 0.086 0.914 27 H 0.093 0.907 28 H 0.081 0.919 29 H 0.047 0.953 30 H 0.093 0.907 31 H 0.156 0.844 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.226 0.774 39 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges 23.674 -15.980 0.732 28.572 hybrid contribution -0.531 -0.503 0.744 1.043 sum 23.144 -16.483 1.477 28.452 Atomic orbital electron populations 1.69948 1.05932 1.27645 1.48522 1.24804 0.94515 0.99024 0.93401 0.86653 0.81713 0.83165 0.79715 1.19366 1.20174 1.16176 1.22141 0.87173 0.97395 1.58113 0.89449 1.84130 1.11575 1.05678 1.97520 1.23004 0.97424 0.98940 1.03625 1.21292 0.94899 0.94491 1.03010 1.21986 0.86984 0.96772 1.00612 1.60384 1.11486 1.09224 1.49634 1.22243 0.95207 0.89225 0.94111 0.88633 1.22950 0.99322 0.99347 0.98060 1.22034 0.97742 0.99446 0.96500 1.22331 1.00913 0.95547 0.96439 1.22286 1.00015 0.99080 0.91451 0.87689 1.20414 0.83267 0.74874 0.90207 1.43909 1.10444 1.77023 1.11161 1.90774 1.32316 1.47994 1.69216 0.92030 0.91613 0.91362 0.90706 0.91885 0.95293 0.90715 0.84412 0.91343 0.91341 0.91463 0.91511 0.90888 0.91076 0.77417 0.77084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -27.42 13.97 55.49 0.78 -26.64 16 2 C 0.09 2.72 5.50 -17.43 -0.10 2.62 16 3 Si 0.86 22.09 27.74 -169.99 -4.71 17.38 16 4 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.24 -5.96 6.74 56.52 0.38 -5.58 16 7 C -0.50 -14.98 10.04 30.94 0.31 -14.66 16 8 H 0.09 2.78 8.03 -52.48 -0.42 2.36 16 9 S -0.22 -5.49 19.41 -107.50 -2.09 -7.58 16 10 C -0.08 -1.65 5.67 37.16 0.21 -1.44 16 11 C -0.10 -1.61 5.48 -26.74 -0.15 -1.76 16 12 C 0.07 0.94 5.53 -3.83 -0.02 0.92 16 13 N -0.68 -8.15 6.34 -104.98 -0.67 -8.82 16 14 C 0.10 1.07 2.23 -66.06 -0.15 0.92 16 15 H 0.10 1.22 7.17 -51.93 -0.37 0.84 16 16 C -0.16 -1.28 6.43 -25.61 -0.16 -1.44 16 17 C -0.12 -0.73 6.80 -25.61 -0.17 -0.90 16 18 C -0.11 -0.66 6.26 -25.06 -0.16 -0.82 16 19 C -0.11 -0.87 2.96 -89.77 -0.27 -1.13 16 20 H 0.11 0.74 8.14 -51.93 -0.42 0.32 16 21 C 0.53 5.49 7.41 -10.99 -0.08 5.41 16 22 N -0.86 -5.36 8.87 31.22 0.28 -5.08 16 23 O -0.53 -8.24 16.56 5.56 0.09 -8.15 16 24 H 0.27 7.75 8.31 -40.82 -0.34 7.41 16 25 H 0.07 1.33 8.14 -51.92 -0.42 0.91 16 26 H 0.07 1.42 8.14 -51.92 -0.42 1.00 16 27 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 29 H 0.03 0.39 8.12 -51.93 -0.42 -0.04 16 30 H 0.07 1.15 8.08 -51.93 -0.42 0.73 16 31 H 0.34 3.54 8.15 -39.29 -0.32 3.22 16 32 H 0.07 0.54 7.58 -51.93 -0.39 0.15 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 37 H 0.07 0.46 8.05 -51.93 -0.42 0.04 16 38 H 0.40 1.18 8.83 -40.82 -0.36 0.82 16 39 H 0.40 2.29 8.93 -40.82 -0.36 1.92 16 LS Contribution 332.67 15.07 5.01 5.01 Total: -1.00 -35.05 332.67 -8.49 -43.54 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -6.45 Total: 2.64 kcal Atomic # 6 Polarization: -11.57 SS G_CDS: -0.73 Total: -12.30 kcal Atomic # 7 Polarization: -40.93 SS G_CDS: 0.39 Total: -40.54 kcal Atomic # 8 Polarization: -8.24 SS G_CDS: 0.09 Total: -8.15 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.71 Total: 17.38 kcal Atomic # 16 Polarization: -5.49 SS G_CDS: -2.09 Total: -7.58 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -35.05 -8.49 -43.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381845173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.562 kcal (2) G-P(sol) polarization free energy of solvation -35.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds