Wall clock time and date at job start Mon Mar 30 2020 04:49:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86793 * 120.00183 * 2 1 4 4 H 1.48504 * 109.47244 * 269.99762 * 3 2 1 5 5 H 1.48498 * 109.47205 * 29.99491 * 3 2 1 6 6 H 1.48496 * 109.47344 * 149.99974 * 3 2 1 7 7 C 1.38795 * 119.99575 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00171 * 359.97438 * 7 2 1 9 9 S 1.76198 * 119.99810 * 180.02562 * 7 2 1 10 10 C 1.81002 * 100.00092 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47326 * 179.97438 * 10 9 7 12 12 C 1.52992 * 109.47482 * 179.97438 * 11 10 9 13 13 N 1.46901 * 109.47859 * 179.97438 * 12 11 10 14 14 C 1.46890 * 111.00688 * 180.02562 * 13 12 11 15 15 H 1.09005 * 110.43324 * 36.08922 * 14 13 12 16 16 C 1.54270 * 110.48800 * 273.54785 * 14 13 12 17 17 C 1.53869 * 106.59998 * 217.71066 * 16 14 13 18 18 C 1.54269 * 106.59803 * 359.97438 * 17 16 14 19 19 C 1.54885 * 110.48951 * 158.77078 * 14 13 12 20 20 H 1.09003 * 110.75978 * 38.30691 * 19 14 13 21 21 C 1.50705 * 110.75762 * 274.93679 * 19 14 13 22 22 N 1.34772 * 120.00015 * 179.97438 * 21 19 14 23 23 O 1.21275 * 119.99725 * 359.97438 * 21 19 14 24 24 H 0.97007 * 119.99682 * 0.02562 * 1 2 3 25 25 H 1.09002 * 109.47154 * 300.00093 * 10 9 7 26 26 H 1.09001 * 109.47171 * 60.00111 * 10 9 7 27 27 H 1.09002 * 109.47153 * 300.00184 * 11 10 9 28 28 H 1.08998 * 109.47533 * 59.99813 * 11 10 9 29 29 H 1.09002 * 109.47103 * 300.00247 * 12 11 10 30 30 H 1.09001 * 109.47066 * 60.00169 * 12 11 10 31 31 H 1.00905 * 110.99920 * 56.03919 * 13 12 11 32 32 H 1.09000 * 110.02728 * 336.99593 * 16 14 13 33 33 H 1.09000 * 110.03505 * 98.37529 * 16 14 13 34 34 H 1.08997 * 110.03686 * 119.28213 * 17 16 14 35 35 H 1.09007 * 110.03468 * 240.71676 * 17 16 14 36 36 H 1.09003 * 110.48392 * 142.29277 * 18 17 16 37 37 H 1.09002 * 110.48861 * 264.79687 * 18 17 16 38 38 H 0.97005 * 120.00359 * 0.02562 * 22 21 19 39 39 H 0.96999 * 120.00372 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2504 1.6176 0.0000 4 1 2.4980 2.0463 -1.4001 5 1 1.4478 2.6526 0.6999 6 1 3.5479 1.4401 0.7000 7 6 2.0102 -1.2020 0.0005 8 1 1.4702 -2.1374 0.0014 9 16 3.7722 -1.2021 0.0012 10 6 4.0865 -2.9847 0.0025 11 6 5.5956 -3.2365 0.0026 12 6 5.8612 -4.7432 0.0044 13 7 7.3102 -4.9851 0.0039 14 6 7.6038 -6.4244 0.0049 15 1 6.8707 -6.9627 -0.5959 16 6 7.6248 -6.9701 1.4477 17 6 8.7558 -8.0116 1.5073 18 6 9.3822 -8.0630 0.0985 19 6 9.0370 -6.6857 -0.5209 20 1 9.7249 -5.9185 -0.1654 21 6 9.0485 -6.7593 -2.0261 22 7 10.2054 -6.9808 -2.6811 23 8 8.0168 -6.6193 -2.6479 24 1 -0.4850 0.8401 -0.0004 25 1 3.6432 -3.4311 0.8927 26 1 3.6439 -3.4323 -0.8873 27 1 6.0385 -2.7901 -0.8877 28 1 6.0386 -2.7888 0.8922 29 1 5.4184 -5.1892 0.8950 30 1 5.4182 -5.1913 -0.8850 31 1 7.7540 -4.5246 0.7844 32 1 7.8249 -6.1609 2.1500 33 1 6.6701 -7.4406 1.6829 34 1 9.5049 -7.7080 2.2385 35 1 8.3503 -8.9885 1.7711 36 1 10.4627 -8.1906 0.1659 37 1 8.9397 -8.8691 -0.4867 38 1 11.0306 -7.0931 -2.1837 39 1 10.2128 -7.0285 -3.6499 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381845173.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:10 Heat of formation + Delta-G solvation = -97.558007 kcal Electronic energy + Delta-G solvation = -18364.082588 eV Core-core repulsion = 15430.019384 eV Total energy + Delta-G solvation = -2934.063204 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -41.00116 -38.76663 -36.56446 -34.70308 -34.56540 -33.15351 -30.10620 -28.50958 -27.90837 -25.54275 -23.17272 -22.57713 -21.24797 -20.65424 -19.61651 -18.48561 -17.63243 -17.12620 -16.81574 -16.66091 -16.29793 -15.76045 -15.49391 -15.21311 -14.91262 -14.54469 -14.31986 -14.08712 -13.69655 -13.34326 -13.14879 -13.02249 -12.92939 -12.53455 -12.43198 -12.13042 -11.97965 -11.80740 -11.74951 -11.47039 -11.35576 -11.17578 -10.79612 -10.59043 -10.55890 -9.29358 -9.00778 -8.53357 -6.25019 1.11026 1.31900 1.47226 1.72502 1.77472 2.24299 2.66410 2.70038 2.84521 3.14985 3.53514 3.73190 3.94608 4.00277 4.23355 4.26288 4.36749 4.42702 4.46363 4.51030 4.53818 4.62932 4.71930 4.74433 4.80965 5.01230 5.10176 5.18647 5.19678 5.23963 5.29284 5.41785 5.68243 5.98801 6.07651 6.08244 6.56501 6.58118 6.90346 7.48198 8.60079 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033828 B = 0.003062 C = 0.002946 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 827.517586 B = 9142.384582 C = 9501.084120 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.036 3.964 3 Si 0.928 3.072 4 H -0.262 1.262 5 H -0.260 1.260 6 H -0.227 1.227 7 C -0.525 4.525 8 H 0.048 0.952 9 S -0.216 6.216 10 C -0.070 4.070 11 C -0.083 4.083 12 C 0.079 3.921 13 N -0.683 5.683 14 C 0.098 3.902 15 H 0.063 0.937 16 C -0.153 4.153 17 C -0.115 4.115 18 C -0.106 4.106 19 C -0.100 4.100 20 H 0.125 0.875 21 C 0.521 3.479 22 N -0.840 5.840 23 O -0.592 6.592 24 H 0.277 0.723 25 H 0.067 0.933 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.077 0.923 29 H 0.037 0.963 30 H 0.054 0.946 31 H 0.349 0.651 32 H 0.075 0.925 33 H 0.057 0.943 34 H 0.085 0.915 35 H 0.070 0.930 36 H 0.105 0.895 37 H 0.061 0.939 38 H 0.417 0.583 39 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.316 -17.141 2.735 32.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.168 4.168 3 Si 0.749 3.251 4 H -0.187 1.187 5 H -0.185 1.185 6 H -0.151 1.151 7 C -0.672 4.672 8 H 0.066 0.934 9 S 0.012 5.988 10 C -0.220 4.220 11 C -0.122 4.122 12 C -0.052 4.052 13 N -0.314 5.314 14 C -0.013 4.013 15 H 0.082 0.918 16 C -0.193 4.193 17 C -0.153 4.153 18 C -0.144 4.144 19 C -0.122 4.122 20 H 0.142 0.858 21 C 0.307 3.693 22 N -0.404 5.404 23 O -0.471 6.471 24 H 0.087 0.913 25 H 0.086 0.914 26 H 0.076 0.924 27 H 0.085 0.915 28 H 0.096 0.904 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.076 0.924 34 H 0.104 0.896 35 H 0.089 0.911 36 H 0.123 0.877 37 H 0.080 0.920 38 H 0.248 0.752 39 H 0.233 0.767 Dipole moment (debyes) X Y Z Total from point charges 27.179 -15.983 1.833 31.584 hybrid contribution -1.590 -0.657 0.372 1.760 sum 25.589 -16.640 2.204 30.603 Atomic orbital electron populations 1.70049 1.07707 1.29179 1.49218 1.25825 0.95469 1.02893 0.92638 0.85674 0.80781 0.78388 0.80244 1.18687 1.18476 1.15072 1.22355 0.90168 0.96250 1.58453 0.93383 1.83776 1.07439 1.10021 1.97554 1.23075 1.00422 0.95206 1.03250 1.21161 0.91553 0.96266 1.03245 1.21715 0.88715 0.94668 1.00068 1.60318 1.09843 1.10773 1.50457 1.22249 0.95956 0.87780 0.95326 0.91825 1.22889 0.99935 1.00121 0.96342 1.22037 0.97301 0.98908 0.97048 1.22343 1.02856 0.93498 0.95719 1.22294 0.98802 1.01159 0.89954 0.85758 1.20876 0.83218 0.74011 0.91224 1.43743 1.10190 1.74915 1.11555 1.90754 1.34652 1.51225 1.70499 0.91337 0.91436 0.92363 0.91519 0.90434 0.94452 0.92768 0.83128 0.90609 0.92363 0.89597 0.91130 0.87653 0.92003 0.75159 0.76654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -58.38 13.97 21.65 0.30 -58.08 16 2 C 0.04 2.20 5.50 84.86 0.47 2.66 16 3 Si 0.93 45.30 27.74 68.60 1.90 47.20 16 4 H -0.26 -12.46 7.11 99.48 0.71 -11.76 16 5 H -0.26 -11.92 7.11 99.48 0.71 -11.21 16 6 H -0.23 -10.64 6.74 99.48 0.67 -9.97 16 7 C -0.52 -32.19 10.04 67.95 0.68 -31.50 16 8 H 0.05 3.21 8.03 -2.91 -0.02 3.19 16 9 S -0.22 -10.87 19.41 -56.49 -1.10 -11.97 16 10 C -0.07 -2.90 5.67 71.98 0.41 -2.49 16 11 C -0.08 -2.67 5.48 30.59 0.17 -2.50 16 12 C 0.08 2.21 5.53 86.30 0.48 2.69 16 13 N -0.68 -15.75 6.34 -486.06 -3.08 -18.83 16 14 C 0.10 1.95 2.23 45.99 0.10 2.05 16 15 H 0.06 1.69 7.17 -2.38 -0.02 1.68 16 16 C -0.15 -2.22 6.43 31.32 0.20 -2.02 16 17 C -0.11 -1.06 6.80 31.32 0.21 -0.84 16 18 C -0.11 -0.92 6.26 31.68 0.20 -0.72 16 19 C -0.10 -1.43 2.96 -10.24 -0.03 -1.46 16 20 H 0.12 1.33 8.14 -2.39 -0.02 1.31 16 21 C 0.52 10.35 7.41 87.66 0.65 11.00 16 22 N -0.84 -8.81 8.87 -173.54 -1.54 -10.35 16 23 O -0.59 -18.96 16.56 -3.02 -0.05 -19.01 16 24 H 0.28 16.08 8.31 -92.70 -0.77 15.31 16 25 H 0.07 2.75 8.14 -2.39 -0.02 2.73 16 26 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 27 H 0.07 2.27 8.14 -2.39 -0.02 2.25 16 28 H 0.08 2.29 8.14 -2.39 -0.02 2.27 16 29 H 0.04 0.97 8.12 -2.39 -0.02 0.95 16 30 H 0.05 1.74 8.08 -2.39 -0.02 1.72 16 31 H 0.35 6.57 8.15 -89.69 -0.73 5.84 16 32 H 0.08 1.00 7.58 -2.39 -0.02 0.98 16 33 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 35 H 0.07 0.63 8.14 -2.38 -0.02 0.61 16 36 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 37 H 0.06 0.68 8.05 -2.39 -0.02 0.66 16 38 H 0.42 1.16 8.83 -92.70 -0.82 0.34 16 39 H 0.40 4.03 8.93 -92.71 -0.83 3.20 16 Total: -1.00 -78.54 332.67 -1.38 -79.92 By element: Atomic # 1 Polarization: 15.62 SS G_CDS: -1.36 Total: 14.26 kcal Atomic # 6 Polarization: -26.67 SS G_CDS: 3.54 Total: -23.13 kcal Atomic # 7 Polarization: -82.95 SS G_CDS: -4.32 Total: -87.27 kcal Atomic # 8 Polarization: -18.96 SS G_CDS: -0.05 Total: -19.01 kcal Atomic # 14 Polarization: 45.30 SS G_CDS: 1.90 Total: 47.20 kcal Atomic # 16 Polarization: -10.87 SS G_CDS: -1.10 Total: -11.97 kcal Total: -78.54 -1.38 -79.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381845173.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.639 kcal (2) G-P(sol) polarization free energy of solvation -78.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.177 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds