Wall clock time and date at job start Mon Mar 30 2020 04:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 120.00067 * 2 1 4 4 H 1.48489 * 109.47219 * 270.00032 * 3 2 1 5 5 H 1.48508 * 109.46755 * 30.00121 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99659 * 3 2 1 7 7 C 1.38795 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99804 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00069 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99901 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47329 * 179.97438 * 11 10 9 13 13 N 1.46890 * 109.47398 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00264 * 179.97438 * 13 12 11 15 15 H 1.08993 * 110.01487 * 33.61155 * 14 13 12 16 16 C 1.54268 * 110.07359 * 272.19054 * 14 13 12 17 17 C 1.54884 * 104.19414 * 217.08200 * 16 14 13 18 18 C 1.54887 * 102.75234 * 37.94165 * 17 16 14 19 19 C 1.53881 * 110.03217 * 154.99843 * 14 13 12 20 20 H 1.08996 * 110.02844 * 238.66680 * 19 14 13 21 21 C 1.50696 * 110.03167 * 0.05076 * 19 14 13 22 22 N 1.34775 * 120.00091 * 266.17515 * 21 19 14 23 23 O 1.21283 * 120.00323 * 86.18126 * 21 19 14 24 24 H 0.97008 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47371 * 59.99624 * 10 9 7 26 26 H 1.08998 * 109.47230 * 299.99748 * 10 9 7 27 27 H 1.08994 * 109.47076 * 60.00005 * 11 10 9 28 28 H 1.08998 * 109.46974 * 300.00058 * 11 10 9 29 29 H 1.09006 * 109.47205 * 59.99768 * 12 11 10 30 30 H 1.09001 * 109.46809 * 300.00295 * 12 11 10 31 31 H 1.00902 * 111.00416 * 56.04298 * 13 12 11 32 32 H 1.09000 * 110.48239 * 335.75948 * 16 14 13 33 33 H 1.08996 * 110.48374 * 98.27095 * 16 14 13 34 34 H 1.09001 * 110.75365 * 156.25830 * 17 16 14 35 35 H 1.08998 * 110.75632 * 279.44143 * 17 16 14 36 36 H 1.08992 * 110.49091 * 203.37533 * 18 17 16 37 37 H 1.09007 * 110.48679 * 80.73160 * 18 17 16 38 38 H 0.97000 * 120.00345 * 179.97438 * 22 21 19 39 39 H 0.97005 * 119.99973 * 359.73222 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9844 -0.0001 11 6 5.5957 -3.2362 -0.0002 12 6 5.8614 -4.7430 0.0002 13 7 7.3103 -4.9848 0.0007 14 6 7.6039 -6.4241 0.0017 15 1 6.8430 -6.9605 -0.5650 16 6 7.6552 -6.9531 1.4500 17 6 8.7946 -8.0020 1.4311 18 6 9.8401 -7.3541 0.4898 19 6 8.9933 -6.6791 -0.6088 20 1 8.9063 -7.3386 -1.4723 21 6 9.6247 -5.3735 -1.0183 22 7 9.4881 -4.9261 -2.2823 23 8 10.2559 -4.7254 -0.2106 24 1 -0.4851 0.8401 -0.0004 25 1 3.6439 -3.4314 -0.8904 26 1 3.6433 -3.4317 0.8896 27 1 6.0387 -2.7894 0.8897 28 1 6.0386 -2.7891 -0.8902 29 1 5.4184 -5.1904 -0.8897 30 1 5.4186 -5.1898 0.8903 31 1 7.7534 -4.5251 0.7820 32 1 7.8915 -6.1455 2.1428 33 1 6.7080 -7.4205 1.7190 34 1 9.2080 -8.1412 2.4301 35 1 8.4405 -8.9498 1.0257 36 1 10.4883 -8.1163 0.0574 37 1 10.4293 -6.6113 1.0276 38 1 9.8942 -4.0855 -2.5458 39 1 8.9866 -5.4463 -2.9294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000381845190.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:16 Heat of formation + Delta-G solvation = -69.143865 kcal Electronic energy + Delta-G solvation = -18605.971902 eV Core-core repulsion = 15673.140828 eV Total energy + Delta-G solvation = -2932.831074 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.30387 -37.73888 -35.48695 -33.59471 -32.43812 -32.04957 -29.43559 -27.56113 -25.71422 -24.32549 -22.34561 -21.28042 -21.06703 -19.44456 -17.52170 -17.26000 -17.03983 -16.21332 -15.47265 -15.12032 -14.97737 -14.66015 -14.26656 -14.04425 -13.69461 -13.61292 -12.91191 -12.71322 -12.56155 -12.04723 -11.72130 -11.51103 -11.44260 -11.35155 -11.10919 -11.05129 -11.03403 -10.93173 -10.50864 -10.11456 -9.86936 -9.76138 -9.61435 -9.00104 -8.55077 -8.50918 -6.93422 -6.28124 -4.00194 2.72966 3.01427 3.30859 3.46799 3.52263 3.58160 3.99922 4.26730 4.32512 4.36526 4.67976 4.82380 5.01624 5.08251 5.09926 5.10899 5.14184 5.23505 5.32125 5.34759 5.44988 5.58700 5.60662 5.71236 5.73807 5.84744 5.86821 5.99113 6.07829 6.22614 6.48987 6.63373 6.79664 6.94911 7.26991 7.37488 7.95672 8.33227 8.44189 9.17997 10.81382 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.003304 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.274533 B = 8472.302836 C = 8952.700634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.883 5.883 2 C 0.091 3.909 3 Si 0.862 3.138 4 H -0.268 1.268 5 H -0.276 1.276 6 H -0.238 1.238 7 C -0.502 4.502 8 H 0.087 0.913 9 S -0.215 6.215 10 C -0.081 4.081 11 C -0.098 4.098 12 C 0.065 3.935 13 N -0.685 5.685 14 C 0.096 3.904 15 H 0.087 0.913 16 C -0.153 4.153 17 C -0.120 4.120 18 C -0.116 4.116 19 C -0.109 4.109 20 H 0.089 0.911 21 C 0.553 3.447 22 N -0.849 5.849 23 O -0.553 6.553 24 H 0.270 0.730 25 H 0.067 0.933 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.031 0.969 31 H 0.349 0.651 32 H 0.071 0.929 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.068 0.932 36 H 0.067 0.933 37 H 0.086 0.914 38 H 0.398 0.602 39 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.621 -16.857 -2.190 25.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.117 4.117 3 Si 0.687 3.313 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.162 1.162 7 C -0.650 4.650 8 H 0.105 0.895 9 S 0.013 5.987 10 C -0.230 4.230 11 C -0.137 4.137 12 C -0.065 4.065 13 N -0.317 5.317 14 C -0.015 4.015 15 H 0.106 0.894 16 C -0.192 4.192 17 C -0.158 4.158 18 C -0.154 4.154 19 C -0.131 4.131 20 H 0.107 0.893 21 C 0.338 3.662 22 N -0.411 5.411 23 O -0.430 6.430 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.084 0.916 27 H 0.082 0.918 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.050 0.950 31 H 0.169 0.831 32 H 0.090 0.910 33 H 0.087 0.913 34 H 0.087 0.913 35 H 0.086 0.914 36 H 0.086 0.914 37 H 0.105 0.895 38 H 0.228 0.772 39 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 19.572 -15.507 -2.225 25.069 hybrid contribution -1.280 -0.364 0.345 1.374 sum 18.292 -15.872 -1.880 24.291 Atomic orbital electron populations 1.69940 1.05934 1.27703 1.48383 1.24797 0.94509 0.99026 0.93337 0.86666 0.81759 0.83180 0.79721 1.19361 1.20109 1.16161 1.22131 0.87161 0.97381 1.58309 0.89469 1.84194 1.11560 1.05459 1.97518 1.23000 0.97311 0.99150 1.03537 1.21288 0.94895 0.94357 1.03173 1.22014 0.87057 0.96971 1.00497 1.60589 1.11287 1.08988 1.50793 1.22128 0.94739 0.89430 0.95165 0.89433 1.23123 0.99200 0.99535 0.97358 1.22404 0.95657 0.97937 0.99793 1.22394 0.97442 0.99723 0.95809 1.22043 0.96169 0.95052 0.99833 0.89256 1.19963 0.77885 0.86759 0.81619 1.43748 1.57898 1.27012 1.12394 1.90690 1.42455 1.58852 1.51025 0.91985 0.91470 0.91610 0.91771 0.90783 0.91031 0.95048 0.83140 0.91036 0.91266 0.91277 0.91367 0.91432 0.89527 0.77183 0.77478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -26.97 13.97 55.49 0.78 -26.20 16 2 C 0.09 2.70 5.50 -17.43 -0.10 2.60 16 3 Si 0.86 21.80 27.74 -169.99 -4.72 17.08 16 4 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 5 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 6 H -0.24 -5.92 6.74 56.52 0.38 -5.53 16 7 C -0.50 -14.71 10.04 30.94 0.31 -14.40 16 8 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 9 S -0.22 -5.32 19.41 -107.50 -2.09 -7.41 16 10 C -0.08 -1.57 5.67 37.16 0.21 -1.36 16 11 C -0.10 -1.53 5.48 -26.73 -0.15 -1.67 16 12 C 0.06 0.80 5.51 -3.83 -0.02 0.78 16 13 N -0.69 -7.61 4.68 -105.54 -0.49 -8.10 16 14 C 0.10 0.86 3.21 -66.59 -0.21 0.64 16 15 H 0.09 0.71 7.81 -51.93 -0.41 0.31 16 16 C -0.15 -1.29 6.46 -25.07 -0.16 -1.45 16 17 C -0.12 -0.86 6.91 -24.74 -0.17 -1.03 16 18 C -0.12 -0.94 6.31 -25.07 -0.16 -1.09 16 19 C -0.11 -0.90 3.29 -90.65 -0.30 -1.20 16 20 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 21 C 0.55 5.94 5.71 -10.99 -0.06 5.88 16 22 N -0.85 -6.82 8.87 31.22 0.28 -6.54 16 23 O -0.55 -8.20 16.50 5.55 0.09 -8.11 16 24 H 0.27 7.65 8.31 -40.82 -0.34 7.31 16 25 H 0.07 1.30 8.14 -51.91 -0.42 0.87 16 26 H 0.07 1.28 8.14 -51.92 -0.42 0.86 16 27 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 28 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.07 0.85 8.07 -51.93 -0.42 0.43 16 30 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.35 4.33 8.01 -39.29 -0.31 4.02 16 32 H 0.07 0.69 7.56 -51.93 -0.39 0.29 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.09 0.90 6.89 -51.92 -0.36 0.54 16 38 H 0.40 3.11 8.93 -40.82 -0.36 2.75 16 39 H 0.40 2.17 8.83 -40.82 -0.36 1.81 16 LS Contribution 330.06 15.07 4.97 4.97 Total: -1.00 -33.24 330.06 -8.40 -41.65 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -6.42 Total: 4.96 kcal Atomic # 6 Polarization: -11.50 SS G_CDS: -0.81 Total: -12.31 kcal Atomic # 7 Polarization: -41.40 SS G_CDS: 0.56 Total: -40.84 kcal Atomic # 8 Polarization: -8.20 SS G_CDS: 0.09 Total: -8.11 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.72 Total: 17.08 kcal Atomic # 16 Polarization: -5.32 SS G_CDS: -2.09 Total: -7.41 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -33.24 -8.40 -41.65 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381845190.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.495 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.649 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.144 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds