Wall clock time and date at job start Mon Mar 30 2020 04:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31625 * 1 3 3 Si 1.86807 * 120.00067 * 2 1 4 4 H 1.48489 * 109.47219 * 270.00032 * 3 2 1 5 5 H 1.48508 * 109.46755 * 30.00121 * 3 2 1 6 6 H 1.48498 * 109.47175 * 149.99659 * 3 2 1 7 7 C 1.38795 * 120.00117 * 180.02562 * 2 1 3 8 8 H 1.07998 * 119.99804 * 359.97438 * 7 2 1 9 9 S 1.76202 * 120.00069 * 180.02562 * 7 2 1 10 10 C 1.80997 * 99.99901 * 179.97438 * 9 7 2 11 11 C 1.53003 * 109.47149 * 179.97438 * 10 9 7 12 12 C 1.53002 * 109.47329 * 179.97438 * 11 10 9 13 13 N 1.46890 * 109.47398 * 180.02562 * 12 11 10 14 14 C 1.46903 * 111.00264 * 179.97438 * 13 12 11 15 15 H 1.08993 * 110.01487 * 33.61155 * 14 13 12 16 16 C 1.54268 * 110.07359 * 272.19054 * 14 13 12 17 17 C 1.54884 * 104.19414 * 217.08200 * 16 14 13 18 18 C 1.54887 * 102.75234 * 37.94165 * 17 16 14 19 19 C 1.53881 * 110.03217 * 154.99843 * 14 13 12 20 20 H 1.08996 * 110.02844 * 238.66680 * 19 14 13 21 21 C 1.50696 * 110.03167 * 0.05076 * 19 14 13 22 22 N 1.34775 * 120.00091 * 266.17515 * 21 19 14 23 23 O 1.21283 * 120.00323 * 86.18126 * 21 19 14 24 24 H 0.97008 * 120.00111 * 0.02562 * 1 2 3 25 25 H 1.09006 * 109.47371 * 59.99624 * 10 9 7 26 26 H 1.08998 * 109.47230 * 299.99748 * 10 9 7 27 27 H 1.08994 * 109.47076 * 60.00005 * 11 10 9 28 28 H 1.08998 * 109.46974 * 300.00058 * 11 10 9 29 29 H 1.09006 * 109.47205 * 59.99768 * 12 11 10 30 30 H 1.09001 * 109.46809 * 300.00295 * 12 11 10 31 31 H 1.00902 * 111.00416 * 56.04298 * 13 12 11 32 32 H 1.09000 * 110.48239 * 335.75948 * 16 14 13 33 33 H 1.08996 * 110.48374 * 98.27095 * 16 14 13 34 34 H 1.09001 * 110.75365 * 156.25830 * 17 16 14 35 35 H 1.08998 * 110.75632 * 279.44143 * 17 16 14 36 36 H 1.08992 * 110.49091 * 203.37533 * 18 17 16 37 37 H 1.09007 * 110.48679 * 80.73160 * 18 17 16 38 38 H 0.97000 * 120.00345 * 179.97438 * 22 21 19 39 39 H 0.97005 * 119.99973 * 359.73222 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6178 0.0000 4 1 2.4978 2.0465 -1.4000 5 1 1.4477 2.6527 0.7001 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 -0.0005 8 1 1.4702 -2.1373 -0.0005 9 16 3.7723 -1.2020 0.0001 10 6 4.0866 -2.9844 -0.0001 11 6 5.5957 -3.2362 -0.0002 12 6 5.8614 -4.7430 0.0002 13 7 7.3103 -4.9848 0.0007 14 6 7.6039 -6.4241 0.0017 15 1 6.8430 -6.9605 -0.5650 16 6 7.6552 -6.9531 1.4500 17 6 8.7946 -8.0020 1.4311 18 6 9.8401 -7.3541 0.4898 19 6 8.9933 -6.6791 -0.6088 20 1 8.9063 -7.3386 -1.4723 21 6 9.6247 -5.3735 -1.0183 22 7 9.4881 -4.9261 -2.2823 23 8 10.2559 -4.7254 -0.2106 24 1 -0.4851 0.8401 -0.0004 25 1 3.6439 -3.4314 -0.8904 26 1 3.6433 -3.4317 0.8896 27 1 6.0387 -2.7894 0.8897 28 1 6.0386 -2.7891 -0.8902 29 1 5.4184 -5.1904 -0.8897 30 1 5.4186 -5.1898 0.8903 31 1 7.7534 -4.5251 0.7820 32 1 7.8915 -6.1455 2.1428 33 1 6.7080 -7.4205 1.7190 34 1 9.2080 -8.1412 2.4301 35 1 8.4405 -8.9498 1.0257 36 1 10.4883 -8.1163 0.0574 37 1 10.4293 -6.6113 1.0276 38 1 9.8942 -4.0855 -2.5458 39 1 8.9866 -5.4463 -2.9294 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381845190.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:15 Heat of formation + Delta-G solvation = -93.890153 kcal Electronic energy + Delta-G solvation = -18607.044982 eV Core-core repulsion = 15673.140828 eV Total energy + Delta-G solvation = -2933.904154 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.06377 -38.56742 -36.47811 -34.69943 -34.38306 -33.17213 -30.08095 -28.50651 -27.90167 -25.46344 -23.08513 -22.48234 -21.73362 -20.20514 -19.60161 -18.05220 -17.79629 -17.14056 -17.06915 -16.49297 -16.11939 -15.90855 -15.24447 -15.12457 -14.91839 -14.62297 -14.41753 -14.01389 -13.73074 -13.34753 -13.17920 -13.00490 -12.59751 -12.46903 -12.34128 -11.99729 -11.93550 -11.85139 -11.70346 -11.56247 -11.46927 -11.17590 -10.72563 -10.56869 -10.38394 -9.37027 -9.00585 -8.53363 -6.24595 1.11654 1.30716 1.46941 1.73672 1.93310 2.23687 2.67724 2.84411 2.84794 3.14072 3.61305 3.72105 3.96773 4.04296 4.21626 4.28643 4.40539 4.43814 4.51040 4.53920 4.58373 4.63891 4.71946 4.76665 4.82435 5.00096 5.09382 5.15340 5.20600 5.23410 5.28665 5.47177 5.68513 6.06489 6.08574 6.12448 6.31856 6.72193 6.91067 7.60595 8.59743 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.033078 B = 0.003304 C = 0.003127 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.274533 B = 8472.302836 C = 8952.700634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.922 5.922 2 C 0.038 3.962 3 Si 0.925 3.075 4 H -0.261 1.261 5 H -0.262 1.262 6 H -0.232 1.232 7 C -0.521 4.521 8 H 0.051 0.949 9 S -0.226 6.226 10 C -0.067 4.067 11 C -0.086 4.086 12 C 0.077 3.923 13 N -0.688 5.688 14 C 0.096 3.904 15 H 0.104 0.896 16 C -0.154 4.154 17 C -0.113 4.113 18 C -0.115 4.115 19 C -0.105 4.105 20 H 0.121 0.879 21 C 0.546 3.454 22 N -0.838 5.838 23 O -0.601 6.601 24 H 0.277 0.723 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.070 0.930 29 H 0.082 0.918 30 H 0.035 0.965 31 H 0.340 0.660 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.069 0.931 35 H 0.087 0.913 36 H 0.084 0.916 37 H 0.057 0.943 38 H 0.399 0.601 39 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.878 -17.931 -2.923 26.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.166 4.166 3 Si 0.746 3.254 4 H -0.185 1.185 5 H -0.187 1.187 6 H -0.155 1.155 7 C -0.669 4.669 8 H 0.070 0.930 9 S 0.002 5.998 10 C -0.216 4.216 11 C -0.125 4.125 12 C -0.053 4.053 13 N -0.318 5.318 14 C -0.015 4.015 15 H 0.122 0.878 16 C -0.193 4.193 17 C -0.151 4.151 18 C -0.153 4.153 19 C -0.127 4.127 20 H 0.139 0.861 21 C 0.332 3.668 22 N -0.399 5.399 23 O -0.482 6.482 24 H 0.086 0.914 25 H 0.087 0.913 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.088 0.912 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.159 0.841 32 H 0.072 0.928 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.103 0.897 37 H 0.076 0.924 38 H 0.229 0.771 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 20.812 -16.610 -2.997 26.796 hybrid contribution -1.664 -0.151 0.543 1.757 sum 19.148 -16.761 -2.453 25.566 Atomic orbital electron populations 1.70034 1.07602 1.29118 1.49276 1.25762 0.95406 1.02705 0.92755 0.85719 0.80677 0.78735 0.80252 1.18520 1.18680 1.15524 1.22336 0.90011 0.96265 1.58273 0.93038 1.83942 1.07614 1.10682 1.97571 1.23057 1.00133 0.94800 1.03575 1.21167 0.91611 0.96979 1.02733 1.21829 0.88084 0.94207 1.01221 1.60575 1.10133 1.10640 1.50436 1.22256 0.95507 0.87992 0.95735 0.87790 1.23103 1.00033 0.99451 0.96706 1.22394 0.94725 0.98193 0.99815 1.22367 0.97681 0.99450 0.95845 1.22106 0.95376 0.94246 1.00942 0.86122 1.20440 0.77339 0.87307 0.81748 1.43702 1.57170 1.27007 1.11983 1.90672 1.44674 1.60392 1.52507 0.91370 0.91252 0.91721 0.92247 0.91176 0.89936 0.94665 0.84118 0.92796 0.90643 0.91236 0.89416 0.89708 0.92384 0.77098 0.75780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -57.14 13.97 21.65 0.30 -56.84 16 2 C 0.04 2.28 5.50 84.86 0.47 2.75 16 3 Si 0.93 44.75 27.74 68.60 1.90 46.65 16 4 H -0.26 -12.20 7.11 99.48 0.71 -11.49 16 5 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 6 H -0.23 -10.91 6.74 99.48 0.67 -10.24 16 7 C -0.52 -31.05 10.04 67.95 0.68 -30.37 16 8 H 0.05 3.32 8.03 -2.91 -0.02 3.29 16 9 S -0.23 -11.06 19.41 -56.49 -1.10 -12.16 16 10 C -0.07 -2.53 5.67 71.98 0.41 -2.12 16 11 C -0.09 -2.54 5.48 30.60 0.17 -2.37 16 12 C 0.08 1.73 5.51 86.31 0.48 2.20 16 13 N -0.69 -14.05 4.68 -487.83 -2.28 -16.33 16 14 C 0.10 1.46 3.21 45.64 0.15 1.60 16 15 H 0.10 1.29 7.81 -2.39 -0.02 1.27 16 16 C -0.15 -2.31 6.46 31.67 0.20 -2.11 16 17 C -0.11 -1.37 6.91 31.88 0.22 -1.15 16 18 C -0.12 -1.66 6.31 31.67 0.20 -1.46 16 19 C -0.10 -1.47 3.29 -10.82 -0.04 -1.51 16 20 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 21 C 0.55 11.00 5.71 87.66 0.50 11.50 16 22 N -0.84 -11.92 8.87 -173.54 -1.54 -13.46 16 23 O -0.60 -17.86 16.50 -3.04 -0.05 -17.91 16 24 H 0.28 15.79 8.31 -92.70 -0.77 15.02 16 25 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 26 H 0.06 2.47 8.14 -2.40 -0.02 2.46 16 27 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 28 H 0.07 2.15 8.14 -2.39 -0.02 2.13 16 29 H 0.08 1.71 8.07 -2.38 -0.02 1.69 16 30 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 31 H 0.34 8.19 8.01 -89.69 -0.72 7.47 16 32 H 0.05 1.00 7.56 -2.39 -0.02 0.98 16 33 H 0.07 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 37 H 0.06 1.20 6.89 -2.38 -0.02 1.18 16 38 H 0.40 5.72 8.93 -92.71 -0.83 4.89 16 39 H 0.41 3.40 8.83 -92.70 -0.82 2.58 16 Total: -1.00 -72.90 330.06 -0.67 -73.57 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -1.34 Total: 19.52 kcal Atomic # 6 Polarization: -26.47 SS G_CDS: 3.44 Total: -23.03 kcal Atomic # 7 Polarization: -83.12 SS G_CDS: -3.52 Total: -86.64 kcal Atomic # 8 Polarization: -17.86 SS G_CDS: -0.05 Total: -17.91 kcal Atomic # 14 Polarization: 44.75 SS G_CDS: 1.90 Total: 46.65 kcal Atomic # 16 Polarization: -11.06 SS G_CDS: -1.10 Total: -12.16 kcal Total: -72.90 -0.67 -73.57 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381845190.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.317 kcal (2) G-P(sol) polarization free energy of solvation -72.903 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -93.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds