Wall clock time and date at job start Mon Mar 30 2020 04:49:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31635 * 1 3 3 Si 1.86797 * 119.99815 * 2 1 4 4 H 1.48498 * 109.46978 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.47450 * 300.00357 * 3 2 1 6 6 H 1.48499 * 109.47275 * 60.00466 * 3 2 1 7 7 C 1.38798 * 119.99977 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99786 * 179.97438 * 7 2 1 9 9 S 1.76197 * 119.99982 * 359.97438 * 7 2 1 10 10 C 1.81002 * 99.99905 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47143 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.47060 * 180.02562 * 11 10 9 13 13 N 1.46901 * 109.47186 * 180.02562 * 12 11 10 14 14 C 1.46899 * 111.00129 * 179.97438 * 13 12 11 15 15 H 1.08999 * 110.01870 * 317.36409 * 14 13 12 16 16 C 1.54266 * 110.02977 * 78.80688 * 14 13 12 17 17 C 1.54891 * 104.19535 * 142.89874 * 16 14 13 18 18 C 1.54894 * 102.74643 * 322.05492 * 17 16 14 19 19 C 1.53874 * 110.03142 * 195.97197 * 14 13 12 20 20 H 1.09003 * 110.03165 * 121.38380 * 19 14 13 21 21 C 1.50693 * 110.03337 * 0.02562 * 19 14 13 22 22 N 1.34777 * 120.00464 * 95.49221 * 21 19 14 23 23 O 1.21285 * 119.99714 * 275.49145 * 21 19 14 24 24 H 0.96994 * 120.00108 * 359.97438 * 1 2 3 25 25 H 1.08997 * 109.47103 * 299.99993 * 10 9 7 26 26 H 1.09003 * 109.47228 * 59.99941 * 10 9 7 27 27 H 1.09004 * 109.47068 * 299.99779 * 11 10 9 28 28 H 1.08994 * 109.47081 * 59.99690 * 11 10 9 29 29 H 1.09004 * 109.46793 * 299.99694 * 12 11 10 30 30 H 1.09003 * 109.47475 * 60.00011 * 12 11 10 31 31 H 1.00899 * 110.99908 * 56.04370 * 13 12 11 32 32 H 1.09008 * 110.48753 * 261.56847 * 16 14 13 33 33 H 1.08995 * 110.48780 * 24.21753 * 16 14 13 34 34 H 1.09002 * 110.75570 * 203.74625 * 17 16 14 35 35 H 1.08992 * 110.76274 * 80.36669 * 17 16 14 36 36 H 1.09005 * 110.48757 * 279.26605 * 18 17 16 37 37 H 1.08999 * 110.48785 * 156.62698 * 18 17 16 38 38 H 0.96993 * 119.99577 * 359.97438 * 22 21 19 39 39 H 0.96996 * 119.99910 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3464 -0.0006 5 1 1.8915 2.3965 -1.2124 6 1 1.8916 2.3964 1.2125 7 6 2.0103 -1.2020 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1293 -2.7279 -0.0005 10 6 2.5159 -3.8914 -0.0005 11 6 1.9794 -5.3243 0.0001 12 6 3.1514 -6.3077 0.0008 13 7 2.6363 -7.6834 0.0008 14 6 3.7361 -8.6573 0.0008 15 1 4.5149 -8.3407 -0.6929 16 6 4.3182 -8.7970 1.4225 17 6 4.6619 -10.3022 1.5460 18 6 3.4896 -10.9831 0.7968 19 6 3.2092 -10.0473 -0.3970 20 1 3.7324 -10.4052 -1.2838 21 6 1.7277 -9.9806 -0.6645 22 7 1.2769 -9.8209 -1.9246 23 8 0.9410 -10.0708 0.2541 24 1 -0.4850 0.8400 0.0004 25 1 3.1245 -3.7313 -0.8905 26 1 3.1246 -3.7313 0.8895 27 1 1.3710 -5.4840 0.8904 28 1 1.3705 -5.4846 -0.8896 29 1 3.7601 -6.1480 -0.8893 30 1 3.7600 -6.1472 0.8907 31 1 2.0171 -7.8377 -0.7808 32 1 5.2178 -8.1905 1.5278 33 1 3.5758 -8.5128 2.1683 34 1 4.6823 -10.6093 2.5917 35 1 5.6117 -10.5229 1.0589 36 1 2.6134 -11.0519 1.4416 37 1 3.7844 -11.9719 0.4455 38 1 1.9060 -9.7485 -2.6592 39 1 0.3233 -9.7776 -2.0966 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000381845192.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:18 Heat of formation + Delta-G solvation = -90.252302 kcal Electronic energy + Delta-G solvation = -18570.410791 eV Core-core repulsion = 15636.664386 eV Total energy + Delta-G solvation = -2933.746405 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.27774 -38.53205 -36.54968 -34.62765 -34.59935 -33.18992 -30.16473 -28.50804 -27.74000 -25.52717 -23.27127 -22.53474 -21.45310 -20.26220 -19.55564 -18.15593 -17.90531 -17.11140 -16.90811 -16.72691 -16.19852 -15.96297 -15.69200 -15.09951 -14.88922 -14.58225 -14.48371 -13.82336 -13.56931 -13.23401 -12.95121 -12.85172 -12.61474 -12.51639 -12.15994 -12.04858 -12.00435 -11.93004 -11.70338 -11.47721 -11.32055 -11.16361 -10.88983 -10.59169 -10.32718 -9.39243 -8.68621 -8.38187 -6.15197 1.30959 1.38222 1.49379 1.69133 1.73440 2.27419 2.64628 2.96026 3.08111 3.33392 3.54109 3.64224 3.96993 4.01707 4.20204 4.30309 4.35875 4.44028 4.47393 4.49562 4.52833 4.65199 4.71704 4.78063 4.84337 5.05714 5.10400 5.15563 5.21534 5.25684 5.29037 5.38920 5.52679 5.95399 6.05748 6.17488 6.34380 6.53185 7.03790 7.43646 8.71645 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.034616 B = 0.003129 C = 0.002964 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 808.668879 B = 8945.165547 C = 9444.774481 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.909 5.909 2 C 0.013 3.987 3 Si 0.997 3.003 4 H -0.261 1.261 5 H -0.271 1.271 6 H -0.272 1.272 7 C -0.537 4.537 8 H 0.074 0.926 9 S -0.203 6.203 10 C -0.085 4.085 11 C -0.085 4.085 12 C 0.077 3.923 13 N -0.697 5.697 14 C 0.093 3.907 15 H 0.072 0.928 16 C -0.119 4.119 17 C -0.114 4.114 18 C -0.111 4.111 19 C -0.111 4.111 20 H 0.128 0.872 21 C 0.521 3.479 22 N -0.847 5.847 23 O -0.578 6.578 24 H 0.271 0.729 25 H 0.066 0.934 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.074 0.926 31 H 0.338 0.662 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.071 0.929 35 H 0.090 0.910 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.416 0.584 39 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.973 -22.513 -4.809 25.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.192 4.192 3 Si 0.819 3.181 4 H -0.185 1.185 5 H -0.196 1.196 6 H -0.197 1.197 7 C -0.685 4.685 8 H 0.092 0.908 9 S 0.025 5.975 10 C -0.234 4.234 11 C -0.124 4.124 12 C -0.054 4.054 13 N -0.332 5.332 14 C -0.017 4.017 15 H 0.090 0.910 16 C -0.158 4.158 17 C -0.152 4.152 18 C -0.149 4.149 19 C -0.133 4.133 20 H 0.146 0.854 21 C 0.307 3.693 22 N -0.411 5.411 23 O -0.456 6.456 24 H 0.080 0.920 25 H 0.085 0.915 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.158 0.842 32 H 0.092 0.908 33 H 0.072 0.928 34 H 0.090 0.910 35 H 0.109 0.891 36 H 0.074 0.926 37 H 0.107 0.893 38 H 0.247 0.753 39 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges 10.251 -22.696 -3.451 25.142 hybrid contribution 1.273 1.592 -1.200 2.366 sum 11.524 -21.104 -4.651 24.491 Atomic orbital electron populations 1.70173 1.07770 1.28509 1.48064 1.26115 0.96056 1.03245 0.93735 0.84927 0.78447 0.76452 0.78291 1.18497 1.19581 1.19744 1.23074 0.94749 0.91861 1.58783 0.90792 1.84730 1.14303 1.01402 1.97040 1.23127 1.00053 0.97179 1.03070 1.21122 0.98135 0.90949 1.02150 1.21847 0.95459 0.86824 1.01234 1.60638 1.19225 1.02699 1.50594 1.22241 0.91935 0.89336 0.98140 0.90975 1.22466 1.00023 0.97623 0.95647 1.22447 0.98293 0.93483 1.00954 1.22327 0.99014 0.98224 0.95341 1.22231 0.91525 0.97171 1.02351 0.85384 1.20723 0.91757 0.74155 0.82702 1.43943 1.12695 1.76048 1.08445 1.90731 1.59027 1.50733 1.45128 0.91964 0.91501 0.91932 0.92527 0.92139 0.93723 0.90752 0.84169 0.90771 0.92823 0.91029 0.89128 0.92616 0.89254 0.75333 0.76474 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -55.76 13.22 21.65 0.29 -55.47 16 2 C 0.01 0.76 5.49 84.86 0.47 1.23 16 3 Si 1.00 44.31 29.55 68.60 2.03 46.34 16 4 H -0.26 -11.03 7.11 99.48 0.71 -10.32 16 5 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 6 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 7 C -0.54 -31.51 9.50 67.95 0.65 -30.87 16 8 H 0.07 4.16 7.80 -2.91 -0.02 4.14 16 9 S -0.20 -11.15 21.44 -56.49 -1.21 -12.36 16 10 C -0.08 -3.48 5.67 71.98 0.41 -3.08 16 11 C -0.08 -2.88 5.48 30.59 0.17 -2.71 16 12 C 0.08 2.00 5.51 86.30 0.48 2.47 16 13 N -0.70 -16.86 5.63 -487.83 -2.75 -19.61 16 14 C 0.09 1.65 3.21 45.64 0.15 1.80 16 15 H 0.07 1.01 7.96 -2.39 -0.02 0.99 16 16 C -0.12 -2.20 6.04 31.67 0.19 -2.01 16 17 C -0.11 -1.56 6.91 31.89 0.22 -1.34 16 18 C -0.11 -1.75 6.32 31.67 0.20 -1.55 16 19 C -0.11 -1.65 3.29 -10.82 -0.04 -1.69 16 20 H 0.13 0.92 8.13 -2.39 -0.02 0.90 16 21 C 0.52 10.65 4.92 87.65 0.43 11.08 16 22 N -0.85 -10.58 8.43 -173.53 -1.46 -12.04 16 23 O -0.58 -18.20 16.60 -3.05 -0.05 -18.25 16 24 H 0.27 15.38 8.31 -92.71 -0.77 14.60 16 25 H 0.07 2.62 8.14 -2.40 -0.02 2.61 16 26 H 0.06 2.54 8.14 -2.39 -0.02 2.52 16 27 H 0.06 2.14 8.14 -2.38 -0.02 2.12 16 28 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.04 1.02 8.09 -2.38 -0.02 1.00 16 30 H 0.07 1.94 7.80 -2.39 -0.02 1.92 16 31 H 0.34 7.90 6.39 -89.69 -0.57 7.33 16 32 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.05 1.32 8.05 -2.39 -0.02 1.30 16 34 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 36 H 0.06 1.27 6.92 -2.38 -0.02 1.25 16 37 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 38 H 0.42 2.26 8.82 -92.71 -0.82 1.44 16 39 H 0.40 5.03 8.93 -92.71 -0.83 4.20 16 Total: -1.00 -76.89 330.87 -1.00 -77.88 By element: Atomic # 1 Polarization: 21.31 SS G_CDS: -1.16 Total: 20.15 kcal Atomic # 6 Polarization: -29.97 SS G_CDS: 3.32 Total: -26.66 kcal Atomic # 7 Polarization: -83.19 SS G_CDS: -3.92 Total: -87.11 kcal Atomic # 8 Polarization: -18.20 SS G_CDS: -0.05 Total: -18.25 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Atomic # 16 Polarization: -11.15 SS G_CDS: -1.21 Total: -12.36 kcal Total: -76.89 -1.00 -77.88 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000381845192.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.369 kcal (2) G-P(sol) polarization free energy of solvation -76.886 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.883 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.252 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds