Wall clock time and date at job start Mon Mar 30 2020 04:49:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48500 * 109.46999 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.46979 * 299.99812 * 3 2 1 6 6 H 1.48496 * 109.47443 * 59.99520 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46901 * 109.46921 * 179.97438 * 13 11 10 15 15 C 1.46906 * 110.99793 * 179.97438 * 14 13 11 16 16 C 1.52995 * 109.46978 * 180.02562 * 15 14 13 17 17 H 1.08999 * 109.38873 * 304.80019 * 16 15 14 18 18 C 1.52581 * 109.39031 * 185.00425 * 16 15 14 19 19 C 1.52584 * 110.73144 * 169.17531 * 18 16 15 20 20 C 1.53105 * 109.95462 * 70.66930 * 19 18 16 21 21 S 1.81743 * 108.84021 * 296.97922 * 20 19 18 22 22 C 1.53096 * 109.39396 * 64.50488 * 16 15 14 23 23 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 24 24 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 25 25 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 26 26 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 27 27 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 28 28 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 29 29 H 1.00898 * 110.99877 * 56.04636 * 14 13 11 30 30 H 1.08995 * 109.47087 * 299.99901 * 15 14 13 31 31 H 1.09002 * 109.46903 * 59.99922 * 15 14 13 32 32 H 1.09009 * 109.22398 * 289.49071 * 18 16 15 33 33 H 1.09000 * 109.23037 * 48.84662 * 18 16 15 34 34 H 1.08989 * 109.39321 * 190.82060 * 19 18 16 35 35 H 1.08998 * 109.38317 * 310.62425 * 19 18 16 36 36 H 1.09002 * 109.57219 * 56.78802 * 20 19 18 37 37 H 1.09002 * 109.57054 * 177.04142 * 20 19 18 38 38 H 1.08999 * 109.57656 * 302.98355 * 22 16 15 39 39 H 1.08996 * 109.57265 * 63.36546 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8903 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 1.9987 -7.3009 0.0032 15 6 2.9232 -8.4426 0.0044 16 6 2.1232 -9.7467 0.0036 17 1 1.4328 -9.7482 0.8471 18 6 3.0803 -10.9282 0.1303 19 6 2.3124 -12.2188 0.4004 20 6 1.5422 -12.6407 -0.8538 21 16 0.3128 -11.3609 -1.2458 22 6 1.3290 -9.8551 -1.3008 23 1 -0.4850 0.8400 -0.0004 24 1 0.6248 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 3.1568 -3.4354 0.0021 27 1 3.3612 -5.9713 -0.8858 28 1 3.3585 -5.9707 0.8942 29 1 1.3632 -7.3515 -0.7789 30 1 3.5519 -8.4019 -0.8851 31 1 3.5505 -8.4012 0.8949 32 1 3.6449 -11.0338 -0.7962 33 1 3.7719 -10.7434 0.9522 34 1 3.0136 -13.0061 0.6764 35 1 1.6095 -12.0572 1.2177 36 1 2.2349 -12.7497 -1.6883 37 1 1.0385 -13.5899 -0.6708 38 1 0.6842 -8.9830 -1.4093 39 1 2.0175 -9.9097 -2.1440 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000384105500.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:49:33 Heat of formation + Delta-G solvation = -82.124234 kcal Electronic energy + Delta-G solvation = -18270.223354 eV Core-core repulsion = 15336.829408 eV Total energy + Delta-G solvation = -2933.393945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 272.130 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.54720 -38.90965 -36.31906 -35.85423 -34.34381 -32.75531 -29.90609 -28.41575 -27.85952 -25.53267 -24.17070 -22.46216 -21.51399 -21.10301 -19.05607 -18.07348 -17.39998 -17.13453 -16.89257 -16.39904 -16.10166 -15.85382 -15.38227 -15.04033 -14.70169 -14.41933 -14.35144 -14.12725 -13.96706 -13.82933 -13.46638 -12.99464 -12.87912 -12.73732 -12.62458 -12.30847 -12.22219 -12.16293 -11.72472 -11.46084 -11.37420 -10.82083 -10.71209 -10.56968 -9.82723 -9.38241 -8.70675 -8.29594 -6.46350 0.82171 1.43044 1.44342 1.57789 1.61392 1.79446 2.29260 2.50192 3.05392 3.26582 3.65196 3.77594 3.91605 3.97911 4.01702 4.18468 4.30946 4.38912 4.47426 4.51614 4.57273 4.68303 4.75567 4.78975 4.90906 5.07722 5.10998 5.14287 5.20142 5.23909 5.40407 5.49046 5.68772 5.84744 5.97510 6.29353 6.65583 6.94655 7.23481 7.52920 8.82959 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.053362 B = 0.002638 C = 0.002551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 524.592963 B =10610.604015 C =10973.890591 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.001 3.999 3 Si 0.986 3.014 4 H -0.251 1.251 5 H -0.279 1.279 6 H -0.280 1.280 7 C -0.554 4.554 8 H 0.085 0.915 9 C 0.266 3.734 10 N -0.708 5.708 11 C 0.490 3.510 12 O -0.594 6.594 13 C 0.057 3.943 14 N -0.694 5.694 15 C 0.071 3.929 16 C -0.081 4.081 17 H 0.072 0.928 18 C -0.118 4.118 19 C -0.119 4.119 20 C -0.070 4.070 21 S -0.328 6.328 22 C -0.068 4.068 23 H 0.268 0.732 24 H -0.014 1.014 25 H -0.016 1.016 26 H 0.409 0.591 27 H 0.086 0.914 28 H 0.124 0.876 29 H 0.341 0.659 30 H 0.049 0.951 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.065 0.935 36 H 0.093 0.907 37 H 0.111 0.889 38 H 0.089 0.911 39 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.028 -24.133 -1.253 27.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.198 4.198 3 Si 0.809 3.191 4 H -0.175 1.175 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.592 4.592 8 H 0.103 0.897 9 C 0.143 3.857 10 N -0.359 5.359 11 C 0.277 3.723 12 O -0.475 6.475 13 C -0.075 4.075 14 N -0.328 5.328 15 C -0.059 4.059 16 C -0.101 4.101 17 H 0.091 0.909 18 C -0.156 4.156 19 C -0.158 4.158 20 C -0.218 4.218 21 S -0.101 6.101 22 C -0.216 4.216 23 H 0.077 0.923 24 H 0.004 0.996 25 H 0.002 0.998 26 H 0.245 0.755 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.161 0.839 30 H 0.067 0.933 31 H 0.109 0.891 32 H 0.093 0.907 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.084 0.916 36 H 0.112 0.888 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 10.830 -24.311 -0.766 26.625 hybrid contribution 1.302 1.365 -0.795 2.047 sum 12.132 -22.947 -1.561 26.003 Atomic orbital electron populations 1.70150 1.08353 1.28509 1.50108 1.26104 0.95782 1.04040 0.93905 0.85091 0.79129 0.77224 0.77639 1.17468 1.20491 1.20523 1.21659 0.94350 0.90514 1.52656 0.89654 1.18518 0.88757 0.84507 0.93910 1.46172 1.11173 1.05512 1.73070 1.21536 0.90029 0.85054 0.75709 1.90648 1.19516 1.85425 1.51944 1.21766 0.93903 0.86825 1.04978 1.60163 1.20129 1.00902 1.51567 1.22097 0.93585 0.87964 1.02248 1.21318 0.97439 0.95019 0.96363 0.90921 1.21521 0.97635 0.92738 1.03697 1.21710 0.99570 0.98188 0.96305 1.23540 0.98559 0.98010 1.01649 1.87271 1.21975 1.07000 1.93883 1.23513 1.00566 0.96184 1.01330 0.92270 0.99623 0.99756 0.75508 0.89581 0.85860 0.83899 0.93319 0.89101 0.90738 0.89421 0.88459 0.91601 0.88822 0.87040 0.89265 0.88876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.80 13.29 21.45 0.28 -56.52 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.99 42.31 29.54 68.60 2.03 44.34 16 4 H -0.25 -9.87 7.11 99.48 0.71 -9.16 16 5 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 6 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 7 C -0.55 -30.15 9.28 25.60 0.24 -29.91 16 8 H 0.09 4.16 7.60 -2.91 -0.02 4.14 16 9 C 0.27 14.74 5.43 85.63 0.46 15.21 16 10 N -0.71 -29.60 5.55 -466.78 -2.59 -32.19 16 11 C 0.49 19.38 7.87 87.66 0.69 20.07 16 12 O -0.59 -29.94 16.20 -3.03 -0.05 -29.99 16 13 C 0.06 1.43 6.17 85.56 0.53 1.96 16 14 N -0.69 -17.46 6.12 -517.92 -3.17 -20.63 16 15 C 0.07 1.16 5.12 86.30 0.44 1.60 16 16 C -0.08 -1.31 2.24 -10.90 -0.02 -1.33 16 17 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 18 C -0.12 -1.25 4.92 30.32 0.15 -1.10 16 19 C -0.12 -1.24 5.75 30.49 0.18 -1.06 16 20 C -0.07 -0.87 6.46 72.02 0.46 -0.40 16 21 S -0.33 -6.81 22.33 -56.49 -1.26 -8.07 16 22 C -0.07 -1.26 5.56 72.01 0.40 -0.86 16 23 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 24 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 25 H -0.02 -0.98 8.14 -2.39 -0.02 -1.00 16 26 H 0.41 13.74 8.32 -92.71 -0.77 12.97 16 27 H 0.09 1.66 8.14 -2.39 -0.02 1.64 16 28 H 0.12 2.50 8.14 -2.39 -0.02 2.49 16 29 H 0.34 9.48 6.60 -89.70 -0.59 8.89 16 30 H 0.05 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.09 1.28 8.09 -2.39 -0.02 1.26 16 32 H 0.07 0.66 8.08 -2.38 -0.02 0.65 16 33 H 0.09 0.74 8.05 -2.39 -0.02 0.72 16 34 H 0.10 0.62 8.14 -2.39 -0.02 0.60 16 35 H 0.07 0.87 8.05 -2.39 -0.02 0.86 16 36 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 38 H 0.09 2.02 6.53 -2.39 -0.02 2.00 16 39 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -74.22 329.56 -1.09 -75.31 By element: Atomic # 1 Polarization: 23.39 SS G_CDS: -0.32 Total: 23.06 kcal Atomic # 6 Polarization: 0.70 SS G_CDS: 3.99 Total: 4.69 kcal Atomic # 7 Polarization: -103.86 SS G_CDS: -5.48 Total: -109.33 kcal Atomic # 8 Polarization: -29.94 SS G_CDS: -0.05 Total: -29.99 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Atomic # 16 Polarization: -6.81 SS G_CDS: -1.26 Total: -8.07 kcal Total: -74.22 -1.09 -75.31 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000384105500.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.815 kcal (2) G-P(sol) polarization free energy of solvation -74.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.309 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds