Wall clock time and date at job start Mon Mar 30 2020 04:47:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47059 * 299.99930 * 3 2 1 6 6 H 1.48497 * 109.47471 * 60.00398 * 3 2 1 7 7 C 1.37871 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00276 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46937 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47172 * 64.99884 * 12 11 10 14 14 C 1.42900 * 113.99726 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46910 * 150.00525 * 14 13 12 16 16 C 1.52997 * 109.47493 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.46880 * 300.00006 * 16 15 14 18 18 C 1.50706 * 109.47215 * 179.97438 * 17 16 15 19 19 O 1.20825 * 119.99859 * 359.97438 * 18 17 16 20 20 O 1.34224 * 120.00295 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47228 * 60.00058 * 17 16 15 22 22 C 1.52996 * 109.47332 * 270.00451 * 14 13 12 23 23 H 0.96996 * 120.00199 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46733 * 60.00002 * 9 7 2 25 25 H 1.09003 * 109.46626 * 300.00659 * 9 7 2 26 26 H 1.08998 * 109.46578 * 60.00416 * 11 10 9 27 27 H 1.09002 * 109.47141 * 299.99985 * 11 10 9 28 28 H 1.09009 * 109.47230 * 305.00232 * 12 11 10 29 29 H 1.08998 * 109.47060 * 185.00187 * 12 11 10 30 30 H 1.09000 * 109.47292 * 30.01096 * 14 13 12 31 31 H 1.09003 * 109.47318 * 59.99856 * 15 14 13 32 32 H 1.09008 * 109.46908 * 300.00299 * 15 14 13 33 33 H 1.08997 * 109.47186 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47116 * 59.99536 * 16 15 14 35 35 H 1.09000 * 109.47459 * 300.00106 * 17 16 15 36 36 H 0.96700 * 117.00196 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.47766 * 59.99578 * 21 17 16 38 38 H 1.09005 * 109.47327 * 180.02562 * 21 17 16 39 39 H 1.09000 * 109.47091 * 299.99659 * 22 14 13 40 40 H 1.08997 * 109.47192 * 60.00463 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3875 -5.8890 1.2217 14 6 4.4291 -6.8618 1.3247 15 6 5.5648 -6.3038 2.1848 16 6 6.6804 -7.3451 2.2946 17 6 6.1287 -8.6173 2.9412 18 6 7.2274 -9.6432 3.0488 19 8 8.3376 -9.3836 2.6489 20 8 6.9724 -10.8456 3.5879 21 6 4.9931 -9.1753 2.0810 22 6 3.8771 -8.1337 1.9715 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 0.9448 -4.9827 -0.8897 27 1 0.9453 -4.9822 0.8903 28 1 3.3219 -5.7960 -0.8412 29 1 2.1822 -6.9375 -0.0885 30 1 4.8080 -7.0952 0.3297 31 1 5.1860 -6.0704 3.1799 32 1 5.9581 -5.3977 1.7239 33 1 7.4893 -6.9477 2.9077 34 1 7.0591 -7.5782 1.2994 35 1 5.7500 -8.3843 3.9363 36 1 7.7088 -11.4707 3.6351 37 1 5.3717 -9.4083 1.0858 38 1 4.5998 -10.0814 2.5419 39 1 3.4983 -7.9002 2.9666 40 1 3.0680 -8.5312 1.3588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000385408888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:01 Heat of formation + Delta-G solvation = -211.988521 kcal Electronic energy + Delta-G solvation = -20765.733782 eV Core-core repulsion = 17351.662876 eV Total energy + Delta-G solvation = -3414.070905 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.88529 -39.01493 -37.09845 -36.46855 -35.85624 -32.71710 -31.17080 -30.85986 -29.05526 -26.77138 -24.33983 -23.04376 -22.36093 -21.88598 -21.32594 -20.03270 -18.34621 -17.14236 -16.72038 -16.45625 -16.23617 -15.79343 -15.18980 -14.86366 -14.48470 -14.21756 -14.01244 -13.84860 -13.67509 -13.16835 -12.71041 -12.54787 -12.36225 -12.06534 -11.90525 -11.61684 -11.39233 -11.36779 -11.23648 -10.86649 -10.81574 -10.72920 -10.68103 -10.44153 -10.38783 -9.96699 -9.30467 -9.04788 -8.80584 -8.14112 -6.08189 -4.09311 1.85820 2.67660 3.31458 3.37709 3.44776 3.75295 4.26165 4.34445 4.37614 4.63693 4.81832 4.91197 4.93341 5.05214 5.05722 5.19523 5.22645 5.28386 5.41558 5.49714 5.51722 5.61537 5.64163 5.77998 5.90180 5.92925 6.02115 6.07990 6.12616 6.16019 6.19408 6.27582 7.12527 7.44997 7.47928 7.54102 7.83276 8.18581 8.61433 9.04748 9.55434 11.03565 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.002887 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.734088 B = 9696.491153 C =10324.926472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.908 3.092 4 H -0.270 1.270 5 H -0.283 1.283 6 H -0.282 1.282 7 C -0.512 4.512 8 H 0.067 0.933 9 C 0.194 3.806 10 O -0.388 6.388 11 C 0.063 3.937 12 C 0.068 3.932 13 O -0.365 6.365 14 C 0.085 3.915 15 C -0.116 4.116 16 C -0.101 4.101 17 C -0.081 4.081 18 C 0.482 3.518 19 O -0.515 6.515 20 O -0.517 6.517 21 C -0.106 4.106 22 C -0.141 4.141 23 H 0.263 0.737 24 H 0.004 0.996 25 H 0.006 0.994 26 H 0.051 0.949 27 H 0.045 0.955 28 H 0.054 0.946 29 H 0.052 0.948 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.408 0.592 37 H 0.068 0.932 38 H 0.079 0.921 39 H 0.076 0.924 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.145 -22.152 5.336 24.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.735 3.265 4 H -0.194 1.194 5 H -0.209 1.209 6 H -0.208 1.208 7 C -0.550 4.550 8 H 0.085 0.915 9 C 0.119 3.881 10 O -0.308 6.308 11 C -0.014 4.014 12 C -0.008 4.008 13 O -0.284 6.284 14 C 0.027 3.973 15 C -0.154 4.154 16 C -0.138 4.138 17 C -0.100 4.100 18 C 0.325 3.675 19 O -0.402 6.402 20 O -0.329 6.329 21 C -0.144 4.144 22 C -0.179 4.179 23 H 0.073 0.927 24 H 0.022 0.978 25 H 0.023 0.977 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.072 0.928 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.094 0.906 32 H 0.100 0.900 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.131 0.869 36 H 0.267 0.733 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.095 0.905 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 10.131 -21.505 5.343 24.365 hybrid contribution 0.508 0.169 -0.156 0.558 sum 10.639 -21.336 5.187 24.399 Atomic orbital electron populations 1.69974 1.06102 1.27003 1.50852 1.24955 0.94985 0.99449 0.95223 0.86283 0.80065 0.82583 0.77581 1.19449 1.20882 1.20841 1.21105 0.94132 0.89340 1.50401 0.91475 1.20213 0.88810 0.83711 0.95324 1.87915 1.35132 1.12629 1.95151 1.22257 0.93735 0.85700 0.99751 1.22611 0.94142 0.97053 0.87035 1.88076 1.47096 1.54883 1.38345 1.22081 0.88457 0.88274 0.98463 1.21582 0.93961 0.98477 1.01374 1.21442 0.97972 0.92551 1.01876 1.21188 0.93080 0.92467 1.03307 1.23648 0.89429 0.81609 0.72847 1.90728 1.25107 1.79081 1.45330 1.84552 1.46692 1.26024 1.75591 1.21497 0.94304 0.98909 0.99699 1.22077 0.97713 0.95230 1.02840 0.92749 0.97799 0.97658 0.93091 0.93698 0.92792 0.92957 0.92282 0.90627 0.90010 0.90376 0.90805 0.86944 0.73315 0.91312 0.90253 0.90501 0.91122 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.27 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 3 Si 0.91 22.15 29.54 -169.99 -5.02 17.13 16 4 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 7 C -0.51 -15.40 9.43 -34.44 -0.32 -15.73 16 8 H 0.07 2.02 7.81 -52.49 -0.41 1.61 16 9 C 0.19 5.45 5.69 36.01 0.20 5.65 16 10 O -0.39 -9.73 10.29 -40.08 -0.41 -10.15 16 11 C 0.06 1.20 6.32 37.16 0.23 1.44 16 12 C 0.07 1.04 6.13 37.16 0.23 1.27 16 13 O -0.37 -5.91 9.95 -40.08 -0.40 -6.31 16 14 C 0.09 1.01 2.61 -26.73 -0.07 0.94 16 15 C -0.12 -1.28 5.57 -26.73 -0.15 -1.43 16 16 C -0.10 -0.94 4.49 -26.73 -0.12 -1.06 16 17 C -0.08 -0.65 2.63 -91.77 -0.24 -0.90 16 18 C 0.48 4.27 7.63 36.01 0.27 4.55 16 19 O -0.51 -6.18 16.74 -18.75 -0.31 -6.50 16 20 O -0.52 -3.33 13.32 -39.24 -0.52 -3.85 16 21 C -0.11 -0.80 5.14 -26.70 -0.14 -0.94 16 22 C -0.14 -1.30 5.54 -26.70 -0.15 -1.44 16 23 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 24 H 0.00 0.12 8.14 -51.93 -0.42 -0.30 16 25 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 26 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.84 8.14 -51.93 -0.42 0.42 16 28 H 0.05 0.81 8.09 -51.92 -0.42 0.39 16 29 H 0.05 0.62 7.87 -51.93 -0.41 0.21 16 30 H 0.06 0.66 7.79 -51.93 -0.40 0.25 16 31 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.08 1.00 8.14 -51.92 -0.42 0.58 16 33 H 0.08 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.07 0.72 8.10 -51.93 -0.42 0.30 16 35 H 0.11 0.78 8.14 -51.93 -0.42 0.36 16 36 H 0.41 1.00 9.10 45.56 0.41 1.41 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.08 0.52 8.11 -51.93 -0.42 0.10 16 39 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.07 0.62 7.87 -51.93 -0.41 0.21 16 LS Contribution 335.52 15.07 5.06 5.06 Total: -1.00 -35.09 335.52 -7.06 -42.15 By element: Atomic # 1 Polarization: 1.00 SS G_CDS: -5.84 Total: -4.84 kcal Atomic # 6 Polarization: -5.80 SS G_CDS: -0.35 Total: -6.15 kcal Atomic # 7 Polarization: -27.27 SS G_CDS: 0.74 Total: -26.53 kcal Atomic # 8 Polarization: -25.16 SS G_CDS: -1.65 Total: -26.81 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.09 -7.06 -42.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -169.837 kcal (2) G-P(sol) polarization free energy of solvation -35.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -204.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -211.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds