Wall clock time and date at job start Mon Mar 30 2020 04:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86797 * 119.99678 * 2 1 4 4 H 1.48506 * 109.47006 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47059 * 299.99930 * 3 2 1 6 6 H 1.48497 * 109.47471 * 60.00398 * 3 2 1 7 7 C 1.37871 * 120.00085 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.50705 * 120.00276 * 359.97438 * 7 2 1 10 10 O 1.42898 * 109.47190 * 180.02562 * 9 7 2 11 11 C 1.42905 * 113.99765 * 179.97438 * 10 9 7 12 12 C 1.52999 * 109.46937 * 180.02562 * 11 10 9 13 13 O 1.42903 * 109.47172 * 64.99884 * 12 11 10 14 14 C 1.42900 * 113.99726 * 179.97438 * 13 12 11 15 15 C 1.53002 * 109.46910 * 150.00525 * 14 13 12 16 16 C 1.52997 * 109.47493 * 180.02562 * 15 14 13 17 17 C 1.52996 * 109.46880 * 300.00006 * 16 15 14 18 18 C 1.50706 * 109.47215 * 179.97438 * 17 16 15 19 19 O 1.20825 * 119.99859 * 359.97438 * 18 17 16 20 20 O 1.34224 * 120.00295 * 180.02562 * 18 17 16 21 21 C 1.52998 * 109.47228 * 60.00058 * 17 16 15 22 22 C 1.52996 * 109.47332 * 270.00451 * 14 13 12 23 23 H 0.96996 * 120.00199 * 359.97438 * 1 2 3 24 24 H 1.09002 * 109.46733 * 60.00002 * 9 7 2 25 25 H 1.09003 * 109.46626 * 300.00659 * 9 7 2 26 26 H 1.08998 * 109.46578 * 60.00416 * 11 10 9 27 27 H 1.09002 * 109.47141 * 299.99985 * 11 10 9 28 28 H 1.09009 * 109.47230 * 305.00232 * 12 11 10 29 29 H 1.08998 * 109.47060 * 185.00187 * 12 11 10 30 30 H 1.09000 * 109.47292 * 30.01096 * 14 13 12 31 31 H 1.09003 * 109.47318 * 59.99856 * 15 14 13 32 32 H 1.09008 * 109.46908 * 300.00299 * 15 14 13 33 33 H 1.08997 * 109.47186 * 180.02562 * 16 15 14 34 34 H 1.09003 * 109.47116 * 59.99536 * 16 15 14 35 35 H 1.09000 * 109.47459 * 300.00106 * 17 16 15 36 36 H 0.96700 * 117.00196 * 179.97438 * 20 18 17 37 37 H 1.09000 * 109.47766 * 59.99578 * 21 17 16 38 38 H 1.09005 * 109.47327 * 180.02562 * 21 17 16 39 39 H 1.09000 * 109.47091 * 299.99659 * 22 14 13 40 40 H 1.08997 * 109.47192 * 60.00463 * 22 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3464 -0.0006 5 1 1.8902 2.3965 -1.2126 6 1 1.8904 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2511 -2.4992 -0.0005 10 8 2.1797 -3.5853 -0.0005 11 6 1.5652 -4.8754 0.0000 12 6 2.6482 -5.9562 0.0006 13 8 3.3875 -5.8890 1.2217 14 6 4.4291 -6.8618 1.3247 15 6 5.5648 -6.3038 2.1848 16 6 6.6804 -7.3451 2.2946 17 6 6.1287 -8.6173 2.9412 18 6 7.2274 -9.6432 3.0488 19 8 8.3376 -9.3836 2.6489 20 8 6.9724 -10.8456 3.5879 21 6 4.9931 -9.1753 2.0810 22 6 3.8771 -8.1337 1.9715 23 1 -0.4850 0.8400 0.0004 24 1 0.6241 -2.5567 -0.8903 25 1 0.6247 -2.5570 0.8897 26 1 0.9448 -4.9827 -0.8897 27 1 0.9453 -4.9822 0.8903 28 1 3.3219 -5.7960 -0.8412 29 1 2.1822 -6.9375 -0.0885 30 1 4.8080 -7.0952 0.3297 31 1 5.1860 -6.0704 3.1799 32 1 5.9581 -5.3977 1.7239 33 1 7.4893 -6.9477 2.9077 34 1 7.0591 -7.5782 1.2994 35 1 5.7500 -8.3843 3.9363 36 1 7.7088 -11.4707 3.6351 37 1 5.3717 -9.4083 1.0858 38 1 4.5998 -10.0814 2.5419 39 1 3.4983 -7.9002 2.9666 40 1 3.0680 -8.5312 1.3588 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000385408888.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 04:47:00 Heat of formation + Delta-G solvation = -236.422923 kcal Electronic energy + Delta-G solvation = -20766.793337 eV Core-core repulsion = 17351.662876 eV Total energy + Delta-G solvation = -3415.130461 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 272.150 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58071 -39.96640 -38.61626 -37.34119 -36.94233 -34.92808 -32.10671 -31.74732 -30.44734 -28.81011 -25.13210 -24.54443 -23.81519 -23.25800 -22.08749 -20.77979 -18.99782 -18.65773 -18.03884 -17.67213 -17.52519 -16.98609 -16.53518 -16.27818 -15.91607 -15.74819 -15.09192 -14.93064 -14.58363 -14.25476 -14.01422 -13.65318 -13.47539 -13.21562 -13.07310 -12.85583 -12.75784 -12.60328 -12.55180 -12.27789 -12.14819 -12.07616 -11.78178 -11.55027 -11.40217 -11.28199 -11.25863 -10.88583 -10.31394 -10.23818 -8.32786 -6.45027 1.18864 1.39723 1.41409 1.56307 2.10249 2.34922 2.71795 3.00776 3.19797 3.55966 3.65424 3.95652 4.03908 4.10948 4.23688 4.28925 4.30278 4.35857 4.47307 4.50036 4.54503 4.59886 4.73575 4.80023 4.86672 4.90560 4.96911 5.07346 5.14635 5.17359 5.17620 5.32579 5.37561 5.54629 5.62125 5.95725 6.39068 6.54571 6.82479 6.99769 7.27010 8.79899 Molecular weight = 272.15amu Principal moments of inertia in cm(-1) A = 0.033860 B = 0.002887 C = 0.002711 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.734088 B = 9696.491153 C =10324.926472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.006 3.994 3 Si 0.984 3.016 4 H -0.266 1.266 5 H -0.269 1.269 6 H -0.270 1.270 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.208 3.792 10 O -0.408 6.408 11 C 0.050 3.950 12 C 0.075 3.925 13 O -0.399 6.399 14 C 0.078 3.922 15 C -0.114 4.114 16 C -0.093 4.093 17 C -0.081 4.081 18 C 0.491 3.509 19 O -0.552 6.552 20 O -0.509 6.509 21 C -0.098 4.098 22 C -0.133 4.133 23 H 0.271 0.729 24 H -0.010 1.010 25 H -0.016 1.016 26 H 0.068 0.932 27 H 0.043 0.957 28 H 0.054 0.946 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.072 0.928 32 H 0.061 0.939 33 H 0.075 0.925 34 H 0.068 0.932 35 H 0.127 0.873 36 H 0.427 0.573 37 H 0.071 0.929 38 H 0.097 0.903 39 H 0.074 0.926 40 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.619 -23.123 5.580 26.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.193 4.193 3 Si 0.807 3.193 4 H -0.190 1.190 5 H -0.194 1.194 6 H -0.196 1.196 7 C -0.586 4.586 8 H 0.077 0.923 9 C 0.133 3.867 10 O -0.328 6.328 11 C -0.027 4.027 12 C -0.002 4.002 13 O -0.319 6.319 14 C 0.021 3.979 15 C -0.152 4.152 16 C -0.131 4.131 17 C -0.100 4.100 18 C 0.335 3.665 19 O -0.443 6.443 20 O -0.323 6.323 21 C -0.136 4.136 22 C -0.171 4.171 23 H 0.080 0.920 24 H 0.008 0.992 25 H 0.002 0.998 26 H 0.086 0.914 27 H 0.062 0.938 28 H 0.072 0.928 29 H 0.113 0.887 30 H 0.084 0.916 31 H 0.091 0.909 32 H 0.080 0.920 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.145 0.855 36 H 0.288 0.712 37 H 0.090 0.910 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 10.599 -22.530 5.596 25.520 hybrid contribution 0.331 0.355 -0.202 0.525 sum 10.930 -22.175 5.394 25.304 Atomic orbital electron populations 1.70070 1.07713 1.28634 1.50549 1.25974 0.96013 1.03406 0.93879 0.85124 0.78593 0.77224 0.78383 1.18965 1.19424 1.19561 1.21416 0.94029 0.90965 1.52205 0.92277 1.19840 0.88628 0.84736 0.93510 1.87866 1.35365 1.14326 1.95214 1.22671 0.95587 0.83938 1.00477 1.22588 0.93365 0.97304 0.86903 1.88021 1.48357 1.56927 1.38628 1.22333 0.87685 0.88613 0.99262 1.21547 0.94395 0.98338 1.00924 1.21318 0.97133 0.92849 1.01765 1.21179 0.93074 0.91663 1.04076 1.23646 0.88766 0.82112 0.72007 1.90726 1.26545 1.79863 1.47129 1.84504 1.47628 1.25483 1.74675 1.21454 0.93352 0.98826 0.99934 1.22000 0.98415 0.94136 1.02561 0.91978 0.99232 0.99806 0.91424 0.93848 0.92775 0.88730 0.91648 0.90887 0.92039 0.90651 0.91330 0.85549 0.71165 0.91011 0.88492 0.90695 0.90168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.74 13.29 21.45 0.28 -56.45 16 2 C 0.01 0.33 5.46 84.65 0.46 0.80 16 3 Si 0.98 45.25 29.54 68.60 2.03 47.27 16 4 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 5 H -0.27 -11.74 7.11 99.48 0.71 -11.04 16 6 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 7 C -0.55 -33.76 9.43 25.60 0.24 -33.51 16 8 H 0.06 3.63 7.81 -2.91 -0.02 3.61 16 9 C 0.21 12.09 5.69 71.24 0.41 12.50 16 10 O -0.41 -20.96 10.29 -144.34 -1.49 -22.44 16 11 C 0.05 1.90 6.32 71.98 0.45 2.36 16 12 C 0.07 2.19 6.13 71.98 0.44 2.63 16 13 O -0.40 -12.78 9.95 -144.34 -1.44 -14.22 16 14 C 0.08 1.77 2.61 30.59 0.08 1.85 16 15 C -0.11 -2.53 5.57 30.59 0.17 -2.36 16 16 C -0.09 -1.68 4.49 30.59 0.14 -1.54 16 17 C -0.08 -1.15 2.63 -11.54 -0.03 -1.18 16 18 C 0.49 7.80 7.63 71.24 0.54 8.34 16 19 O -0.55 -12.74 16.74 21.97 0.37 -12.37 16 20 O -0.51 -5.22 13.32 -51.35 -0.68 -5.91 16 21 C -0.10 -1.22 5.14 30.61 0.16 -1.06 16 22 C -0.13 -2.16 5.54 30.61 0.17 -1.99 16 23 H 0.27 15.22 8.31 -92.71 -0.77 14.45 16 24 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 25 H -0.02 -0.96 8.14 -2.39 -0.02 -0.98 16 26 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 27 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 28 H 0.05 1.57 8.09 -2.38 -0.02 1.55 16 29 H 0.09 1.98 7.87 -2.39 -0.02 1.96 16 30 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 31 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 32 H 0.06 1.58 8.14 -2.38 -0.02 1.56 16 33 H 0.07 1.40 8.10 -2.39 -0.02 1.38 16 34 H 0.07 1.31 8.10 -2.39 -0.02 1.29 16 35 H 0.13 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.43 1.02 9.10 -74.06 -0.67 0.34 16 37 H 0.07 0.88 8.14 -2.39 -0.02 0.86 16 38 H 0.10 0.93 8.11 -2.38 -0.02 0.91 16 39 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.08 1.17 7.87 -2.39 -0.02 1.15 16 Total: -1.00 -76.31 335.52 2.65 -73.66 By element: Atomic # 1 Polarization: 3.28 SS G_CDS: 0.35 Total: 3.63 kcal Atomic # 6 Polarization: -16.40 SS G_CDS: 3.23 Total: -13.17 kcal Atomic # 7 Polarization: -56.74 SS G_CDS: 0.28 Total: -56.45 kcal Atomic # 8 Polarization: -51.70 SS G_CDS: -3.24 Total: -54.93 kcal Atomic # 14 Polarization: 45.25 SS G_CDS: 2.03 Total: 47.27 kcal Total: -76.31 2.65 -73.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000385408888.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -162.765 kcal (2) G-P(sol) polarization free energy of solvation -76.308 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -239.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.658 kcal (6) G-S(sol) free energy of system = (1) + (5) -236.423 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds