Wall clock time and date at job start Mon Mar 30 2020 05:51:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40448 * 126.82267 * 2 1 4 4 C 1.30711 * 106.79195 * 180.25871 * 3 2 1 5 5 N 1.33240 * 108.94677 * 359.75072 * 4 3 2 6 6 C 1.30832 * 109.83001 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.96281 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46583 * 90.02856 * 7 6 5 9 9 C 1.46906 * 110.99842 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46833 * 34.99665 * 9 8 7 11 11 C 1.50696 * 109.46990 * 274.99861 * 9 8 7 12 12 H 1.08005 * 120.00497 * 326.95621 * 11 9 8 13 13 C 1.37880 * 119.99936 * 146.94825 * 11 9 8 14 14 N 1.31516 * 119.99896 * 0.45695 * 13 11 9 15 15 Si 1.86798 * 120.00034 * 180.73758 * 13 11 9 16 16 H 1.48502 * 109.47286 * 179.72584 * 15 13 11 17 17 H 1.48499 * 109.47184 * 299.72279 * 15 13 11 18 18 H 1.48492 * 109.47458 * 59.72254 * 15 13 11 19 19 C 1.50698 * 109.46798 * 155.00078 * 9 8 7 20 20 C 1.38235 * 120.00019 * 46.35270 * 19 9 8 21 21 C 1.38242 * 119.99500 * 179.78458 * 20 19 9 22 22 C 1.38234 * 120.00148 * 0.43785 * 21 20 19 23 23 C 1.38233 * 120.00100 * 359.81559 * 22 21 20 24 24 C 1.38239 * 119.99600 * 226.61888 * 19 9 8 25 25 H 1.09001 * 109.47363 * 270.17474 * 1 2 3 26 26 H 1.09003 * 109.47143 * 30.17298 * 1 2 3 27 27 H 1.08998 * 109.47146 * 150.17729 * 1 2 3 28 28 H 1.08002 * 125.52837 * 179.71100 * 4 3 2 29 29 H 1.09002 * 109.46993 * 330.03463 * 7 6 5 30 30 H 1.08999 * 109.47472 * 210.02654 * 7 6 5 31 31 H 1.00894 * 111.00102 * 56.04776 * 8 7 6 32 32 H 0.96995 * 119.99719 * 1.47405 * 14 13 11 33 33 H 1.07993 * 120.00500 * 359.97438 * 20 19 9 34 34 H 1.07994 * 119.99618 * 180.27070 * 21 20 19 35 35 H 1.07995 * 120.00210 * 179.83090 * 22 21 20 36 36 H 1.07998 * 120.00218 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00093 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5347 0.6766 -0.0057 5 7 3.5096 -0.6556 -0.0037 6 6 2.2707 -1.0761 0.0038 7 6 1.8246 -2.5155 0.0077 8 7 1.6870 -2.9816 1.3940 9 6 1.2531 -4.3845 1.4371 10 1 1.6980 -4.9281 0.6036 11 6 -0.2490 -4.4491 1.3345 12 1 -0.8539 -3.6634 1.7625 13 6 -0.8512 -5.5113 0.6940 14 7 -0.1150 -6.4726 0.1806 15 14 -2.7122 -5.5811 0.5488 16 1 -3.1058 -6.8115 -0.1836 17 1 -3.3143 -5.5990 1.9061 18 1 -3.1960 -4.3882 -0.1915 19 6 1.6951 -5.0072 2.7363 20 6 1.4971 -4.3348 3.9277 21 6 1.8985 -4.9081 5.1199 22 6 2.5062 -6.1497 5.1197 23 6 2.7089 -6.8198 3.9277 24 6 2.3036 -6.2485 2.7360 25 1 -0.3634 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 4.4254 1.2874 -0.0117 29 1 2.5646 -3.1266 -0.5093 30 1 0.8643 -2.5998 -0.5010 31 1 1.0545 -2.3911 1.9129 32 1 0.8503 -6.4452 0.2711 33 1 1.0260 -3.3630 3.9275 34 1 1.7399 -4.3847 6.0511 35 1 2.8223 -6.5964 6.0507 36 1 3.1833 -7.7901 3.9276 37 1 2.4618 -6.7721 1.8047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000389297968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:22 Heat of formation + Delta-G solvation = 113.851796 kcal Electronic energy + Delta-G solvation = -20420.894906 eV Core-core repulsion = 17392.847919 eV Total energy + Delta-G solvation = -3028.046987 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.84689 -38.57922 -35.97352 -33.89515 -32.98738 -31.33172 -30.13408 -29.94576 -27.41448 -26.38763 -24.51492 -22.93686 -21.77759 -21.66492 -20.21636 -20.07965 -17.32152 -16.80756 -16.15631 -15.89132 -15.01939 -14.65796 -14.46019 -14.08692 -13.92349 -13.39748 -13.24759 -13.09866 -12.95021 -12.63292 -12.47466 -12.40925 -11.88284 -11.75044 -11.28668 -11.00459 -10.71762 -10.33512 -10.29127 -10.11847 -9.76613 -9.52757 -9.39039 -9.31509 -8.67952 -8.14085 -7.92924 -7.49464 -6.59537 -4.40254 1.79075 2.19503 2.25476 2.49459 3.17458 3.25800 3.30429 3.47219 4.29969 4.34995 4.63731 4.65783 5.00106 5.12400 5.17090 5.24375 5.40842 5.47377 5.59134 5.62831 5.76318 5.92580 6.05955 6.12374 6.30661 6.42847 6.47074 6.54952 6.64180 6.81894 6.88652 6.97549 7.21593 7.28019 7.42184 7.64743 7.69910 7.84865 8.14710 8.20982 8.35218 8.54784 9.33485 10.73856 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.006772 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.757769 B = 4133.406129 C = 5565.093001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.380 5.380 3 N -0.334 5.334 4 C 0.193 3.807 5 N -0.535 5.535 6 C 0.298 3.702 7 C 0.144 3.856 8 N -0.672 5.672 9 C 0.225 3.775 10 H 0.056 0.944 11 C -0.623 4.623 12 H 0.054 0.946 13 C 0.033 3.967 14 N -0.893 5.893 15 Si 1.064 2.936 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.287 1.287 19 C -0.016 4.016 20 C -0.106 4.106 21 C -0.129 4.129 22 C -0.152 4.152 23 C -0.123 4.123 24 C -0.123 4.123 25 H 0.080 0.920 26 H 0.088 0.912 27 H 0.097 0.903 28 H 0.213 0.787 29 H 0.098 0.902 30 H 0.060 0.940 31 H 0.329 0.671 32 H 0.273 0.727 33 H 0.108 0.892 34 H 0.107 0.893 35 H 0.106 0.894 36 H 0.108 0.892 37 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.588 7.140 1.705 7.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.170 5.170 3 N -0.163 5.163 4 C -0.110 4.110 5 N -0.263 5.263 6 C 0.021 3.979 7 C 0.012 3.988 8 N -0.302 5.302 9 C 0.117 3.883 10 H 0.074 0.926 11 C -0.661 4.661 12 H 0.072 0.928 13 C -0.175 4.175 14 N -0.528 5.528 15 Si 0.892 3.108 16 H -0.205 1.205 17 H -0.213 1.213 18 H -0.214 1.214 19 C -0.017 4.017 20 C -0.125 4.125 21 C -0.147 4.147 22 C -0.170 4.170 23 C -0.141 4.141 24 C -0.142 4.142 25 H 0.098 0.902 26 H 0.107 0.893 27 H 0.115 0.885 28 H 0.230 0.770 29 H 0.116 0.884 30 H 0.078 0.922 31 H 0.145 0.855 32 H 0.085 0.915 33 H 0.126 0.874 34 H 0.125 0.875 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 1.021 6.631 1.124 6.803 hybrid contribution 0.047 0.890 0.577 1.062 sum 1.068 7.521 1.701 7.785 Atomic orbital electron populations 1.21984 0.73872 1.04874 1.04095 1.50272 1.07931 1.04079 1.54768 1.77943 1.02216 1.08602 1.27537 1.25906 0.95617 0.90830 0.98654 1.70519 1.19895 1.10911 1.24987 1.24621 0.85897 0.92755 0.94643 1.20285 1.00715 0.84194 0.93650 1.60880 1.54657 1.05337 1.09327 1.18395 0.94464 0.84182 0.91238 0.92638 1.22407 0.90882 1.11195 1.41634 0.92780 1.25821 1.06977 0.92179 0.92549 1.70841 1.07959 1.32479 1.41485 0.83597 0.74166 0.76413 0.76656 1.20540 1.21261 1.21373 1.20374 0.91138 0.93591 0.96628 1.20740 1.00263 0.99498 0.91971 1.20972 1.00285 0.95935 0.97496 1.20815 1.02800 0.96141 0.97258 1.20949 1.01024 0.99231 0.92927 1.20969 0.99548 0.96098 0.97576 0.90151 0.89298 0.88466 0.77036 0.88352 0.92204 0.85460 0.91506 0.87390 0.87517 0.87544 0.87342 0.86942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.11 11.33 59.84 0.68 1.79 16 2 N -0.38 -5.94 4.04 -65.10 -0.26 -6.20 16 3 N -0.33 -5.39 12.70 29.29 0.37 -5.02 16 4 C 0.19 2.96 13.03 -91.82 -1.20 1.76 16 5 N -0.54 -9.57 11.19 -11.97 -0.13 -9.70 16 6 C 0.30 5.14 7.50 -155.70 -1.17 3.97 16 7 C 0.14 2.56 5.80 -4.97 -0.03 2.53 16 8 N -0.67 -13.09 5.83 -110.45 -0.64 -13.73 16 9 C 0.22 4.98 2.05 -70.02 -0.14 4.83 16 10 H 0.06 1.34 5.85 -51.93 -0.30 1.03 16 11 C -0.62 -14.95 8.07 -34.44 -0.28 -15.22 16 12 H 0.05 1.29 7.74 -52.48 -0.41 0.88 16 13 C 0.03 0.82 5.46 -17.82 -0.10 0.73 16 14 N -0.89 -24.07 13.62 55.43 0.76 -23.31 16 15 Si 1.06 22.76 29.90 -169.99 -5.08 17.67 16 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 17 H -0.29 -6.03 7.11 56.52 0.40 -5.62 16 18 H -0.29 -5.76 7.11 56.52 0.40 -5.36 16 19 C -0.02 -0.35 4.93 -104.62 -0.52 -0.86 16 20 C -0.11 -2.14 9.27 -39.58 -0.37 -2.51 16 21 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 22 C -0.15 -2.65 10.05 -39.58 -0.40 -3.05 16 23 C -0.12 -2.28 10.05 -39.58 -0.40 -2.68 16 24 C -0.12 -2.59 9.58 -39.58 -0.38 -2.97 16 25 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 27 H 0.10 1.10 7.10 -51.93 -0.37 0.73 16 28 H 0.21 2.32 8.06 -52.49 -0.42 1.90 16 29 H 0.10 1.80 8.05 -51.93 -0.42 1.38 16 30 H 0.06 1.06 6.97 -51.93 -0.36 0.69 16 31 H 0.33 6.26 7.87 -39.29 -0.31 5.96 16 32 H 0.27 7.25 5.89 -40.82 -0.24 7.01 16 33 H 0.11 2.09 7.47 -52.49 -0.39 1.70 16 34 H 0.11 1.63 8.06 -52.49 -0.42 1.21 16 35 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 36 H 0.11 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.11 2.36 7.43 -52.49 -0.39 1.97 16 LS Contribution 318.67 15.07 4.80 4.80 Total: -1.00 -29.42 318.67 -9.41 -38.83 By element: Atomic # 1 Polarization: 15.59 SS G_CDS: -4.52 Total: 11.07 kcal Atomic # 6 Polarization: -9.71 SS G_CDS: -4.69 Total: -14.40 kcal Atomic # 7 Polarization: -58.06 SS G_CDS: 0.09 Total: -57.97 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.08 Total: 17.67 kcal Total LS contribution 4.80 Total: 4.80 kcal Total: -29.42 -9.41 -38.83 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389297968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.678 kcal (2) G-P(sol) polarization free energy of solvation -29.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 123.259 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 113.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds