Wall clock time and date at job start Mon Mar 30 2020 05:51:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 N 1.40448 * 126.82267 * 2 1 4 4 C 1.30711 * 106.79195 * 180.25871 * 3 2 1 5 5 N 1.33240 * 108.94677 * 359.75072 * 4 3 2 6 6 C 1.30832 * 109.83001 * 359.97438 * 5 4 3 7 7 C 1.50701 * 125.96281 * 179.97438 * 6 5 4 8 8 N 1.46906 * 109.46583 * 90.02856 * 7 6 5 9 9 C 1.46906 * 110.99842 * 180.02562 * 8 7 6 10 10 H 1.08999 * 109.46833 * 34.99665 * 9 8 7 11 11 C 1.50696 * 109.46990 * 274.99861 * 9 8 7 12 12 H 1.08005 * 120.00497 * 326.95621 * 11 9 8 13 13 C 1.37880 * 119.99936 * 146.94825 * 11 9 8 14 14 N 1.31516 * 119.99896 * 0.45695 * 13 11 9 15 15 Si 1.86798 * 120.00034 * 180.73758 * 13 11 9 16 16 H 1.48502 * 109.47286 * 179.72584 * 15 13 11 17 17 H 1.48499 * 109.47184 * 299.72279 * 15 13 11 18 18 H 1.48492 * 109.47458 * 59.72254 * 15 13 11 19 19 C 1.50698 * 109.46798 * 155.00078 * 9 8 7 20 20 C 1.38235 * 120.00019 * 46.35270 * 19 9 8 21 21 C 1.38242 * 119.99500 * 179.78458 * 20 19 9 22 22 C 1.38234 * 120.00148 * 0.43785 * 21 20 19 23 23 C 1.38233 * 120.00100 * 359.81559 * 22 21 20 24 24 C 1.38239 * 119.99600 * 226.61888 * 19 9 8 25 25 H 1.09001 * 109.47363 * 270.17474 * 1 2 3 26 26 H 1.09003 * 109.47143 * 30.17298 * 1 2 3 27 27 H 1.08998 * 109.47146 * 150.17729 * 1 2 3 28 28 H 1.08002 * 125.52837 * 179.71100 * 4 3 2 29 29 H 1.09002 * 109.46993 * 330.03463 * 7 6 5 30 30 H 1.08999 * 109.47472 * 210.02654 * 7 6 5 31 31 H 1.00894 * 111.00102 * 56.04776 * 8 7 6 32 32 H 0.96995 * 119.99719 * 1.47405 * 14 13 11 33 33 H 1.07993 * 120.00500 * 359.97438 * 20 19 9 34 34 H 1.07994 * 119.99618 * 180.27070 * 21 20 19 35 35 H 1.07995 * 120.00210 * 179.83090 * 22 21 20 36 36 H 1.07998 * 120.00218 * 180.02562 * 23 22 21 37 37 H 1.07999 * 120.00093 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.3067 1.1243 0.0000 4 6 3.5347 0.6766 -0.0057 5 7 3.5096 -0.6556 -0.0037 6 6 2.2707 -1.0761 0.0038 7 6 1.8246 -2.5155 0.0077 8 7 1.6870 -2.9816 1.3940 9 6 1.2531 -4.3845 1.4371 10 1 1.6980 -4.9281 0.6036 11 6 -0.2490 -4.4491 1.3345 12 1 -0.8539 -3.6634 1.7625 13 6 -0.8512 -5.5113 0.6940 14 7 -0.1150 -6.4726 0.1806 15 14 -2.7122 -5.5811 0.5488 16 1 -3.1058 -6.8115 -0.1836 17 1 -3.3143 -5.5990 1.9061 18 1 -3.1960 -4.3882 -0.1915 19 6 1.6951 -5.0072 2.7363 20 6 1.4971 -4.3348 3.9277 21 6 1.8985 -4.9081 5.1199 22 6 2.5062 -6.1497 5.1197 23 6 2.7089 -6.8198 3.9277 24 6 2.3036 -6.2485 2.7360 25 1 -0.3634 0.0031 1.0276 26 1 -0.3633 0.8884 -0.5165 27 1 -0.3633 -0.8916 -0.5111 28 1 4.4254 1.2874 -0.0117 29 1 2.5646 -3.1266 -0.5093 30 1 0.8643 -2.5998 -0.5010 31 1 1.0545 -2.3911 1.9129 32 1 0.8503 -6.4452 0.2711 33 1 1.0260 -3.3630 3.9275 34 1 1.7399 -4.3847 6.0511 35 1 2.8223 -6.5964 6.0507 36 1 3.1833 -7.7901 3.9276 37 1 2.4618 -6.7721 1.8047 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000389297968.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 05:51:21 Heat of formation + Delta-G solvation = 97.426978 kcal Electronic energy + Delta-G solvation = -20421.607140 eV Core-core repulsion = 17392.847919 eV Total energy + Delta-G solvation = -3028.759221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 272.133 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.10365 -40.11771 -37.55606 -35.17742 -34.60402 -32.85895 -31.62427 -31.37347 -28.69324 -27.83592 -26.19501 -24.57269 -23.16450 -22.97892 -21.80608 -21.41350 -19.13031 -18.08217 -17.56642 -17.19055 -16.53535 -16.06731 -15.76152 -15.63773 -15.56224 -14.87928 -14.73481 -14.41323 -14.19275 -14.05981 -14.01570 -13.73405 -13.38579 -13.22659 -12.71931 -12.58185 -12.39213 -11.98864 -11.82250 -11.69691 -11.12064 -11.05729 -10.78067 -10.64257 -10.54200 -9.64530 -9.47442 -9.16327 -8.53149 -6.36753 0.50582 0.68252 0.76084 1.34297 1.54706 1.60394 1.78252 1.91110 2.55268 3.00426 3.11926 3.25932 3.53274 3.62558 3.92853 4.14476 4.19795 4.26563 4.28116 4.37113 4.49228 4.52523 4.57320 4.69318 4.74055 4.91358 4.93678 5.27278 5.30196 5.37759 5.47124 5.67554 5.73828 5.76114 5.77620 5.90677 6.01975 6.33484 6.37000 6.50903 6.61828 7.09432 7.44330 8.77009 Molecular weight = 272.13amu Principal moments of inertia in cm(-1) A = 0.013225 B = 0.006772 C = 0.005030 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.757769 B = 4133.406129 C = 5565.093001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.086 3.914 2 N -0.377 5.377 3 N -0.344 5.344 4 C 0.192 3.808 5 N -0.563 5.563 6 C 0.286 3.714 7 C 0.153 3.847 8 N -0.667 5.667 9 C 0.234 3.766 10 H 0.026 0.974 11 C -0.617 4.617 12 H 0.055 0.945 13 C -0.014 4.014 14 N -0.926 5.926 15 Si 1.104 2.896 16 H -0.291 1.291 17 H -0.279 1.279 18 H -0.264 1.264 19 C -0.044 4.044 20 C -0.122 4.122 21 C -0.127 4.127 22 C -0.146 4.146 23 C -0.126 4.126 24 C -0.149 4.149 25 H 0.090 0.910 26 H 0.110 0.890 27 H 0.100 0.900 28 H 0.250 0.750 29 H 0.086 0.914 30 H 0.060 0.940 31 H 0.332 0.668 32 H 0.263 0.737 33 H 0.110 0.890 34 H 0.140 0.860 35 H 0.146 0.854 36 H 0.134 0.866 37 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.189 8.256 3.425 9.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.167 5.167 3 N -0.173 5.173 4 C -0.110 4.110 5 N -0.291 5.291 6 C 0.009 3.991 7 C 0.021 3.979 8 N -0.298 5.298 9 C 0.125 3.875 10 H 0.044 0.956 11 C -0.656 4.656 12 H 0.074 0.926 13 C -0.215 4.215 14 N -0.562 5.562 15 Si 0.927 3.073 16 H -0.217 1.217 17 H -0.205 1.205 18 H -0.189 1.189 19 C -0.046 4.046 20 C -0.140 4.140 21 C -0.145 4.145 22 C -0.163 4.163 23 C -0.144 4.144 24 C -0.168 4.168 25 H 0.109 0.891 26 H 0.129 0.871 27 H 0.118 0.882 28 H 0.266 0.734 29 H 0.104 0.896 30 H 0.078 0.922 31 H 0.149 0.851 32 H 0.074 0.926 33 H 0.128 0.872 34 H 0.158 0.842 35 H 0.163 0.837 36 H 0.152 0.848 37 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 0.615 7.782 2.849 8.310 hybrid contribution 0.248 0.589 0.104 0.647 sum 0.863 8.371 2.953 8.918 Atomic orbital electron populations 1.22282 0.71922 1.06140 1.05181 1.50486 1.09072 1.03455 1.53720 1.77917 1.02621 1.08846 1.27879 1.26652 0.96666 0.90201 0.97476 1.70486 1.20459 1.12455 1.25749 1.24286 0.86406 0.92568 0.95832 1.20095 1.00335 0.84850 0.92635 1.60810 1.54373 1.04216 1.10356 1.18160 0.93368 0.85107 0.90860 0.95579 1.22623 0.91975 1.10569 1.40422 0.92634 1.26968 1.10080 0.92081 0.92417 1.70924 1.07582 1.33916 1.43791 0.83077 0.70403 0.76758 0.77035 1.21716 1.20465 1.18862 1.20410 0.92942 0.94328 0.96886 1.20882 1.00995 0.99816 0.92332 1.21379 0.98936 0.96233 0.97906 1.21279 1.01173 0.95642 0.98247 1.21284 1.00378 1.00298 0.92420 1.21045 1.01093 0.96377 0.98258 0.89111 0.87129 0.88161 0.73385 0.89602 0.92192 0.85085 0.92593 0.87158 0.84177 0.83651 0.84803 0.88614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.90 11.33 127.77 1.45 3.35 16 2 N -0.38 -11.38 4.04 -359.88 -1.45 -12.83 16 3 N -0.34 -10.55 12.70 -61.25 -0.78 -11.33 16 4 C 0.19 5.61 13.03 180.77 2.36 7.97 16 5 N -0.56 -19.86 11.19 -191.78 -2.15 -22.01 16 6 C 0.29 9.83 7.50 138.23 1.04 10.87 16 7 C 0.15 5.59 5.80 85.56 0.50 6.09 16 8 N -0.67 -26.51 5.83 -503.36 -2.94 -29.45 16 9 C 0.23 10.68 2.05 43.42 0.09 10.77 16 10 H 0.03 1.34 5.85 -2.39 -0.01 1.33 16 11 C -0.62 -30.03 8.07 25.60 0.21 -29.83 16 12 H 0.06 2.63 7.74 -2.91 -0.02 2.61 16 13 C -0.01 -0.70 5.46 84.66 0.46 -0.24 16 14 N -0.93 -51.65 13.62 21.45 0.29 -51.36 16 15 Si 1.10 45.78 29.90 68.60 2.05 47.83 16 16 H -0.29 -12.53 7.11 99.48 0.71 -11.82 16 17 H -0.28 -11.13 7.11 99.48 0.71 -10.42 16 18 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 19 C -0.04 -1.97 4.93 -19.87 -0.10 -2.07 16 20 C -0.12 -4.81 9.27 22.27 0.21 -4.61 16 21 C -0.13 -4.22 10.05 22.27 0.22 -4.00 16 22 C -0.15 -4.61 10.05 22.27 0.22 -4.39 16 23 C -0.13 -4.48 10.05 22.27 0.22 -4.25 16 24 C -0.15 -6.39 9.58 22.27 0.21 -6.18 16 25 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 26 H 0.11 1.96 8.14 -2.39 -0.02 1.94 16 27 H 0.10 2.16 7.10 -2.39 -0.02 2.14 16 28 H 0.25 4.85 8.06 -2.91 -0.02 4.82 16 29 H 0.09 3.32 8.05 -2.39 -0.02 3.30 16 30 H 0.06 2.17 6.97 -2.39 -0.02 2.15 16 31 H 0.33 12.69 7.87 -89.70 -0.71 11.98 16 32 H 0.26 14.78 5.89 -92.71 -0.55 14.23 16 33 H 0.11 4.18 7.47 -2.91 -0.02 4.16 16 34 H 0.14 3.69 8.06 -2.91 -0.02 3.66 16 35 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 36 H 0.13 3.97 8.06 -2.91 -0.02 3.94 16 37 H 0.10 4.30 7.43 -2.91 -0.02 4.28 16 Total: -1.00 -63.91 318.67 2.72 -61.19 By element: Atomic # 1 Polarization: 33.87 SS G_CDS: 0.60 Total: 34.48 kcal Atomic # 6 Polarization: -23.61 SS G_CDS: 7.09 Total: -16.52 kcal Atomic # 7 Polarization: -119.96 SS G_CDS: -7.02 Total: -126.98 kcal Atomic # 14 Polarization: 45.78 SS G_CDS: 2.05 Total: 47.83 kcal Total: -63.91 2.72 -61.19 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000389297968.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.617 kcal (2) G-P(sol) polarization free energy of solvation -63.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 94.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.190 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds